Strain Fitness in Variovorax sp. SCN45 around GFF7253

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7251 and GFF7252 overlap by 7 nucleotidesGFF7252 and GFF7253 are separated by 1 nucleotides GFF7251 - Mobile element protein, at 29,485 to 29,748 GFF7251 GFF7252 - Mobile element protein, at 29,742 to 30,557 GFF7252 GFF7253 - Mobile element protein, at 30,559 to 30,807 GFF7253 Position (kb) 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 29.596 kb on + strand, within GFF7251at 29.596 kb on + strand, within GFF7251at 29.597 kb on - strand, within GFF7251at 30.493 kb on - strandat 30.603 kb on - strand, within GFF7253at 30.632 kb on + strand, within GFF7253at 30.749 kb on + strand, within GFF7253at 30.749 kb on + strand, within GFF7253at 30.750 kb on - strand, within GFF7253at 30.785 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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29,596 + GFF7251 0.42 +0.5
29,596 + GFF7251 0.42 -3.4
29,597 - GFF7251 0.42 +3.0
30,493 - +1.2
30,603 - GFF7253 0.18 +0.5
30,632 + GFF7253 0.29 -3.0
30,749 + GFF7253 0.76 +5.0
30,749 + GFF7253 0.76 -2.3
30,750 - GFF7253 0.77 -0.9
30,785 + -1.0

Or see this region's nucleotide sequence