Strain Fitness in Variovorax sp. SCN45 around GFF7115

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
32,707	+		GFF7114	0.38	-1.4
32,707	+		GFF7114	0.38	+1.3
32,707	+		GFF7114	0.38	-0.9
32,707	+		GFF7114	0.38	+0.3
32,707	+		GFF7114	0.38	-3.0
32,707	+		GFF7114	0.38	+0.4
32,707	+		GFF7114	0.38	-0.4
32,707	+		GFF7114	0.38	-1.4
32,707	+		GFF7114	0.38	-0.8
32,708	-		GFF7114	0.38	+0.2
32,708	-		GFF7114	0.38	-1.5
32,708	-		GFF7114	0.38	+2.8
32,708	-		GFF7114	0.38	-1.1
32,708	-		GFF7114	0.38	-0.1
32,708	-		GFF7114	0.38	-0.5
32,708	-		GFF7114	0.38	-2.6
32,708	-		GFF7114	0.38	-1.4
32,708	-		GFF7114	0.38	-0.1
32,797	+		GFF7114	0.45	-1.1
32,798	-		GFF7114	0.45	-0.4
32,798	-		GFF7114	0.45	-3.1
32,807	+		GFF7114	0.45	-2.5
32,808	-		GFF7114	0.45	+3.4
32,808	-		GFF7114	0.45	-2.0
32,808	-		GFF7114	0.45	-0.8
32,855	-		GFF7114	0.49	-0.5
32,967	+		GFF7114	0.58	-1.7
32,967	+		GFF7114	0.58	-0.3
32,968	-		GFF7114	0.58	-3.3
32,968	-		GFF7114	0.58	+1.1
32,968	-		GFF7114	0.58	-0.7
32,968	-		GFF7114	0.58	-1.5
32,968	-		GFF7114	0.58	-0.2
33,160	+		GFF7114	0.73	-1.0
33,160	+		GFF7114	0.73	-2.4
33,161	-		GFF7114	0.73	+0.6
33,161	-		GFF7114	0.73	-1.6
33,161	-		GFF7114	0.73	-0.2
33,161	-		GFF7114	0.73	-1.9
33,161	-		GFF7114	0.73	-0.6
33,307	+		GFF7114	0.84	+1.4
33,307	+		GFF7114	0.84	+1.4
33,307	+		GFF7114	0.84	-0.5
33,307	+		GFF7114	0.84	+0.1
33,308	-		GFF7114	0.84	+0.2
33,308	-		GFF7114	0.84	-1.4
33,308	-		GFF7114	0.84	-0.5
33,308	-		GFF7114	0.84	-1.9
33,308	-		GFF7114	0.84	+1.7
33,308	-		GFF7114	0.84	+0.8
33,308	-		GFF7114	0.84	+1.8
33,361	+		GFF7114	0.88	+5.1
33,362	-		GFF7114	0.88	-0.9
33,404	+				-0.2
33,404	+				+0.4
33,404	+				-0.7
33,404	+				-2.1
33,404	+				-2.0
33,404	+				-0.0
33,404	+				-2.8
33,404	+				+0.4
33,404	+				-0.8
33,404	+				+0.7
33,404	+				-3.6
33,405	-				-0.3
33,405	-				+0.9
33,405	-				-1.6
33,405	-				+0.8
33,405	-				-0.4
33,405	-				-1.9
33,405	-				-0.2
33,405	-				-1.8
33,405	-				+1.6
33,405	-				-1.0
33,405	-				+0.7
33,405	-				-3.0
33,405	-				-1.1
33,405	-				-0.4
33,405	-				+2.0
33,406	+				-4.1
33,407	-				-2.5
33,407	-				-2.0
33,449	-				-1.1
33,449	-				+1.8
33,449	-				-1.5
33,469	+				+0.7
33,469	+				-0.7
33,470	-				-0.6
33,470	-				+0.4
33,470	-				+1.1
33,470	-				-4.4
33,470	-				-1.7
33,470	-				-1.9
33,470	-				+1.3
33,470	-				-0.9
33,470	-				-0.9
33,473	+				-1.6
33,473	+				-0.4
33,473	+				-2.7
33,474	-				+0.5
33,474	-				+1.2
33,474	-				+0.1
33,565	+				-0.4
33,565	+				-0.4
33,565	+				+2.2
33,565	+				-2.2
33,565	+				-0.3
33,565	+				+0.2
33,565	+				+0.4
33,565	+				+0.0
33,565	+				-1.2
33,565	+				-2.3
33,566	-				-0.2
33,566	-				+2.7
33,566	-				-1.4
33,566	-				+0.3
33,566	-				-1.7
33,567	+				-1.6
33,567	+				-1.8
33,568	-				+2.4
33,591	+				+1.8
33,591	+				-1.1
33,591	+				-1.6
33,591	+				-0.8
33,591	+				+0.7
33,591	+				+0.3
33,591	+				-2.1
33,591	+				+0.6
33,591	+				-1.5
33,591	+				-1.5
33,591	+				+0.3
33,592	-				-0.6
33,592	-				-2.0
33,592	-				-0.8
33,592	-				+0.6
33,592	-				-2.7
33,612	+				-1.8
33,657	+				+1.0
33,657	+				+0.2
33,657	+				+0.1
33,657	+				-1.8
33,657	+				+0.5
33,657	+				-1.6
33,657	+				+0.6
33,658	-				+0.0
33,658	-				-0.2
33,658	-				+0.5
33,658	-				+1.1
33,658	-				-2.3
33,686	+				+0.4
33,687	-				-0.9
33,687	-				+2.0
33,841	-		GFF7115	0.22	+0.8
33,897	+		GFF7115	0.29	+0.0
33,897	+		GFF7115	0.29	-1.0
33,897	+		GFF7115	0.29	-3.1
33,898	-		GFF7115	0.29	-0.4
33,898	-		GFF7115	0.29	-1.2
33,898	-		GFF7115	0.29	-1.3
33,918	+		GFF7115	0.31	-1.2
33,918	+		GFF7115	0.31	-1.5
33,919	-		GFF7115	0.31	+0.9
33,919	-		GFF7115	0.31	-1.9
34,101	-		GFF7115	0.53	-0.9
34,236	+		GFF7115	0.70	-0.8
34,236	+		GFF7115	0.70	-3.2
34,236	+		GFF7115	0.70	-0.6
34,236	+		GFF7115	0.70	-0.3
34,237	-		GFF7115	0.70	-3.0
34,237	-		GFF7115	0.70	-2.2
34,237	-		GFF7115	0.70	-2.1
34,237	-		GFF7115	0.70	-0.9
34,237	-		GFF7115	0.70	-3.9
34,237	-		GFF7115	0.70	+2.2
34,237	-		GFF7115	0.70	-1.3
34,237	-		GFF7115	0.70	-0.0
34,237	-		GFF7115	0.70	-0.9
34,237	-		GFF7115	0.70	-0.6
34,237	-		GFF7115	0.70	+1.5
34,245	+		GFF7115	0.71	-3.0
34,245	+		GFF7115	0.71	-2.8
34,246	-		GFF7115	0.71	+0.4
34,246	-		GFF7115	0.71	+0.2
34,246	-		GFF7115	0.71	-1.1
34,255	+		GFF7115	0.72	-0.5
34,255	+		GFF7115	0.72	+1.9
34,255	+		GFF7115	0.72	-2.1
34,256	-		GFF7115	0.72	+0.8
34,256	-		GFF7115	0.72	-3.5
34,256	-		GFF7115	0.72	-0.4
34,256	-		GFF7115	0.72	-0.4
34,256	-		GFF7115	0.72	+0.8
34,256	-		GFF7115	0.72	-2.1
34,256	-		GFF7115	0.72	+0.4
34,256	-		GFF7115	0.72	+0.4
34,256	-		GFF7115	0.72	-0.2
34,256	-		GFF7115	0.72	+1.2
34,256	-		GFF7115	0.72	-0.6
34,366	+		GFF7115	0.86	-1.9
34,366	+		GFF7115	0.86	-1.2
34,535	+				-1.1
34,535	+				-3.4
34,535	+				-1.2
34,535	+				-1.0
34,535	+				+1.7
34,535	+				-0.2
34,536	-				-2.2
34,536	-				-0.3
34,536	-				-1.6
34,536	-				-3.1
34,538	+				+2.5
34,538	+				+0.1
34,538	+				+1.9
34,538	+				-0.5
34,539	-				-1.8
34,550	+				-0.3
34,551	-				-1.3
34,551	-				-2.5
34,553	+				+3.1
34,553	+				-0.4
34,554	-				-2.0
34,554	-				-0.6
34,554	-				+2.7
34,554	-				+0.8
34,625	+		GFF7116	0.14	+1.0
34,625	+		GFF7116	0.14	-0.4
34,625	+		GFF7116	0.14	-1.1
34,626	-		GFF7116	0.14	-3.1
34,626	-		GFF7116	0.14	-0.1
34,626	-		GFF7116	0.14	-1.1
34,678	+		GFF7116	0.20	-0.9
34,678	+		GFF7116	0.20	+0.1
34,678	+		GFF7116	0.20	-0.2
34,679	-		GFF7116	0.20	-0.2
34,679	-		GFF7116	0.20	+0.3
34,679	-		GFF7116	0.20	-0.0
34,679	-		GFF7116	0.20	+1.9
34,679	-		GFF7116	0.20	+0.4
34,679	-		GFF7116	0.20	+3.0
34,733	+		GFF7116	0.26	-3.8
34,733	+		GFF7116	0.26	-1.9
34,733	+		GFF7116	0.26	-1.8
34,734	-		GFF7116	0.26	+2.4
34,734	-		GFF7116	0.26	-0.6
34,734	-		GFF7116	0.26	-1.5
34,734	-		GFF7116	0.26	-1.7
34,789	+		GFF7116	0.32	+0.0
34,789	+		GFF7116	0.32	-0.6
34,789	+		GFF7116	0.32	-0.5
34,790	-		GFF7116	0.32	-1.9
34,790	-		GFF7116	0.32	-1.8
34,863	-		GFF7116	0.40	+0.4
34,895	+		GFF7116	0.43	+0.6
34,895	+		GFF7116	0.43	+1.0
34,895	+		GFF7116	0.43	-0.9
34,895	+		GFF7116	0.43	-0.4
34,896	-		GFF7116	0.43	+0.8
34,896	-		GFF7116	0.43	-4.0
34,896	-		GFF7116	0.43	+1.1
35,014	+		GFF7116	0.56	+1.5
35,015	-		GFF7116	0.57	+1.0
35,015	-		GFF7116	0.57	+0.1
35,015	-		GFF7116	0.57	-2.1
35,028	-		GFF7116	0.58	-0.5
35,028	-		GFF7116	0.58	-2.0
35,028	-		GFF7116	0.58	+1.0
35,028	-		GFF7116	0.58	+0.1
35,028	-		GFF7116	0.58	+1.4
35,028	-		GFF7116	0.58	+1.0
35,046	+		GFF7116	0.60	-2.2
35,047	-		GFF7116	0.60	-1.8
35,154	+		GFF7116	0.72	-1.4
35,154	+		GFF7116	0.72	-3.1
35,154	+		GFF7116	0.72	+1.1
35,154	+		GFF7116	0.72	-2.1
35,155	-		GFF7116	0.72	+1.4
35,155	-		GFF7116	0.72	-1.3
35,155	-		GFF7116	0.72	+0.9
35,155	-		GFF7116	0.72	+2.8
35,155	-		GFF7116	0.72	-3.2
35,155	-		GFF7116	0.72	+2.1
35,195	+		GFF7116	0.76	+2.5
35,195	+		GFF7116	0.76	-2.5
35,196	-		GFF7116	0.76	-2.2
35,200	+		GFF7116	0.77	-1.9
35,200	+		GFF7116	0.77	-1.2
35,200	+		GFF7116	0.77	-1.3
35,200	+		GFF7116	0.77	-3.5
35,200	+		GFF7116	0.77	-2.1
35,200	+		GFF7116	0.77	-0.6
35,200	+		GFF7116	0.77	+1.5
35,200	+		GFF7116	0.77	-1.5
35,200	+		GFF7116	0.77	-1.1
35,200	+		GFF7116	0.77	+1.8
35,200	+		GFF7116	0.77	-0.6
35,200	+		GFF7116	0.77	-2.2
35,200	+		GFF7116	0.77	-1.3
35,200	+		GFF7116	0.77	-0.5
35,201	-		GFF7116	0.77	-1.9
35,201	-		GFF7116	0.77	+0.9
35,201	-		GFF7116	0.77	-0.2
35,201	-		GFF7116	0.77	-2.2
35,201	-		GFF7116	0.77	+1.1
35,201	-		GFF7116	0.77	+0.2
35,201	-		GFF7116	0.77	-4.5
35,201	-		GFF7116	0.77	+0.0
35,201	-		GFF7116	0.77	-0.8
35,201	-		GFF7116	0.77	-1.3
35,201	-		GFF7116	0.77	-1.3
35,201	-		GFF7116	0.77	+2.7
35,201	-		GFF7116	0.77	+0.6
35,201	-		GFF7116	0.77	+2.7
35,201	-		GFF7116	0.77	-3.0
35,201	-		GFF7116	0.77	-0.4
35,201	-		GFF7116	0.77	+1.0
35,201	-		GFF7116	0.77	+1.9
35,201	-		GFF7116	0.77	-0.8
35,201	-		GFF7116	0.77	+0.8
35,315	+		GFF7116	0.89	-1.3
35,315	+		GFF7116	0.89	-2.3
35,316	-		GFF7116	0.89	-3.0
35,316	-		GFF7116	0.89	-3.1
35,316	-		GFF7116	0.89	-0.2
35,316	-		GFF7116	0.89	+0.6
35,357	+				+0.8
35,357	+				-1.4
35,358	-				+3.3