Strain Fitness in Variovorax sp. SCN45 around GFF7085

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
6,607	-		GFF7083	0.75	-1.6
6,607	-		GFF7083	0.75	+1.1
6,699	+		GFF7083	0.81	+0.9
6,699	+		GFF7083	0.81	-0.3
6,699	+		GFF7083	0.81	-1.1
6,699	+		GFF7083	0.81	-0.2
6,700	-		GFF7083	0.81	-3.1
6,700	-		GFF7083	0.81	+0.9
6,796	+		GFF7083	0.87	+0.0
6,796	+		GFF7083	0.87	+0.5
6,797	-		GFF7083	0.87	-1.5
6,797	-		GFF7083	0.87	-2.3
6,797	-		GFF7083	0.87	-2.2
6,797	-		GFF7083	0.87	+0.9
6,861	+				-0.5
6,861	+				-1.9
6,903	+				+0.4
6,904	-				+1.5
6,909	+				+0.9
6,909	+				-0.2
6,910	-				-0.1
6,910	-				+1.4
6,960	+				+0.8
6,960	+				+0.8
6,960	+				+0.4
6,961	-				+1.0
6,961	-				-2.1
6,961	-				+1.5
7,002	+				-2.9
7,003	-				+0.4
7,003	-				+0.6
7,003	-				-1.3
7,003	-				-1.4
7,059	+				-0.4
7,060	-				-1.5
7,060	-				+1.9
7,106	-		GFF7084	0.21	-2.5
7,180	+		GFF7084	0.57	-2.8
7,180	+		GFF7084	0.57	+1.0
7,180	+		GFF7084	0.57	-1.5
7,180	+		GFF7084	0.57	-1.9
7,180	+		GFF7084	0.57	-1.9
7,180	+		GFF7084	0.57	-2.7
7,181	-		GFF7084	0.58	+1.3
7,181	-		GFF7084	0.58	-1.5
7,181	-		GFF7084	0.58	-2.3
7,248	-				-0.4
7,255	+				+1.3
7,255	+				-0.4
7,256	-				+0.6
7,301	+				+1.5
7,302	-				+0.7
7,302	-				-1.6
7,302	-				-2.4
7,361	+				-0.8
7,361	+				-1.6
7,361	+				-1.2
7,362	-				-1.6
7,362	-				-0.7
7,459	+				+0.1
7,459	+				-0.4
7,459	+				-2.5
7,460	-				+0.4
7,460	-				+1.1
7,460	-				+2.0
7,506	+				-1.4
7,699	+		GFF7085	0.19	+1.3
7,741	-		GFF7085	0.23	+0.2
7,798	+		GFF7085	0.29	+0.8
7,798	+		GFF7085	0.29	+0.4
7,798	+		GFF7085	0.29	-2.7
7,798	+		GFF7085	0.29	+0.2
7,799	-		GFF7085	0.29	-1.8
7,838	+		GFF7085	0.33	-3.2
7,839	-		GFF7085	0.33	+2.4
7,839	-		GFF7085	0.33	+1.6
7,868	+		GFF7085	0.36	+2.4
7,869	-		GFF7085	0.36	-2.1
7,926	+		GFF7085	0.42	+0.1
7,926	+		GFF7085	0.42	-0.3
7,926	+		GFF7085	0.42	+0.3
7,926	+		GFF7085	0.42	-0.3
7,926	+		GFF7085	0.42	+1.8
7,927	-		GFF7085	0.42	+1.5
7,927	-		GFF7085	0.42	-1.0
7,927	-		GFF7085	0.42	-0.8
7,927	-		GFF7085	0.42	-1.5
7,927	-		GFF7085	0.42	-2.6
7,927	-		GFF7085	0.42	-1.9
7,927	-		GFF7085	0.42	-1.5
7,927	-		GFF7085	0.42	-1.4
7,927	-		GFF7085	0.42	-0.6
7,927	-		GFF7085	0.42	-0.6
7,927	-		GFF7085	0.42	-2.1
7,927	-		GFF7085	0.42	-1.4
7,945	+		GFF7085	0.44	+1.0
7,946	-		GFF7085	0.44	-0.2
7,946	-		GFF7085	0.44	+1.4
7,979	+		GFF7085	0.47	+0.4
7,979	+		GFF7085	0.47	+1.4
7,980	-		GFF7085	0.47	+0.7
7,980	-		GFF7085	0.47	+1.8
8,045	+		GFF7085	0.53	-1.5
8,045	+		GFF7085	0.53	-1.4
8,045	+		GFF7085	0.53	-0.1
8,045	+		GFF7085	0.53	-0.4
8,046	-		GFF7085	0.54	-0.9
8,046	-		GFF7085	0.54	-1.4
8,046	-		GFF7085	0.54	-3.2
8,046	-		GFF7085	0.54	-1.0
8,046	-		GFF7085	0.54	-0.6
8,046	-		GFF7085	0.54	+0.2
8,046	-		GFF7085	0.54	-3.1
8,046	-		GFF7085	0.54	-2.0
8,085	-		GFF7085	0.57	+0.5
8,114	+		GFF7085	0.60	-0.8
8,114	+		GFF7085	0.60	-3.0
8,115	-		GFF7085	0.60	+0.0
8,115	-		GFF7085	0.60	+0.3
8,115	-		GFF7085	0.60	-4.0
8,148	+		GFF7085	0.64	+0.7
8,148	+		GFF7085	0.64	-0.4
8,148	+		GFF7085	0.64	+2.7
8,148	+		GFF7085	0.64	-0.5
8,149	-		GFF7085	0.64	-0.2
8,149	-		GFF7085	0.64	+1.3
8,149	-		GFF7085	0.64	+0.4
8,176	+		GFF7085	0.66	-0.7
8,214	+		GFF7085	0.70	-2.6
8,215	-		GFF7085	0.70	-1.9
8,215	-		GFF7085	0.70	+1.8
8,215	-		GFF7085	0.70	+0.7
8,215	-		GFF7085	0.70	+0.1
8,215	-		GFF7085	0.70	+2.5
8,300	+		GFF7085	0.79	+0.7
8,300	+		GFF7085	0.79	+0.8
8,300	+		GFF7085	0.79	-0.6
8,301	-		GFF7085	0.79	-0.5
8,424	+				-1.3
8,424	+				+0.6
8,424	+				+1.9
8,424	+				+0.4
8,424	+				+0.8
8,425	-				-2.1
8,425	-				+1.6
8,425	-				-0.9
8,425	-				-1.2
8,425	-				-3.4
8,425	-				+2.1
8,425	-				-1.1
8,425	-				-1.4
8,425	-				+0.1
8,425	-				+1.9
8,425	-				-0.6
8,446	+				+1.9
8,446	+				+1.4
8,446	+				-2.1
8,447	-				+1.6
8,542	+				-1.9
8,542	+				-0.4
8,542	+				+1.2
8,542	+				-0.1
8,542	+				-2.8
8,543	-				+0.1
8,543	-				-2.1
8,543	-				+0.8
8,611	-				-0.9
8,651	-				-1.6
8,657	+				+1.4
8,658	-				-3.8
8,658	-				+2.0
8,680	+				-0.5
8,680	+				+0.1
8,680	+				-0.2
8,681	-				+1.4
8,681	-				+1.1
8,873	+		GFF7086	0.28	-2.3
8,874	-		GFF7086	0.28	-3.3
8,874	-		GFF7086	0.28	-1.5
8,942	+		GFF7086	0.37	+1.4
8,942	+		GFF7086	0.37	-1.2
8,942	+		GFF7086	0.37	+1.1
8,943	-		GFF7086	0.37	+0.0
8,943	-		GFF7086	0.37	-3.1
8,975	+		GFF7086	0.41	+2.6
8,976	-		GFF7086	0.41	-2.1
8,997	+		GFF7086	0.44	-0.6
8,997	+		GFF7086	0.44	+0.1
9,023	+		GFF7086	0.47	-0.9
9,023	+		GFF7086	0.47	-0.5
9,023	+		GFF7086	0.47	-1.6
9,024	-		GFF7086	0.48	-0.2
9,024	-		GFF7086	0.48	-1.7
9,024	-		GFF7086	0.48	+0.6
9,024	-		GFF7086	0.48	+0.1
9,024	-		GFF7086	0.48	+1.6
9,039	+		GFF7086	0.49	-0.4
9,072	+		GFF7086	0.54	-2.4
9,073	-		GFF7086	0.54	-0.9
9,278	+		GFF7086	0.80	-0.5
9,278	+		GFF7086	0.80	-2.3
9,278	+		GFF7086	0.80	-1.7
9,278	+		GFF7086	0.80	-1.0
9,278	+		GFF7086	0.80	-2.4
9,278	+		GFF7086	0.80	+0.1
9,278	+		GFF7086	0.80	-1.2
9,278	+		GFF7086	0.80	-0.1
9,278	+		GFF7086	0.80	-1.3
9,278	+		GFF7086	0.80	-1.3
9,278	+		GFF7086	0.80	-0.1
9,278	+		GFF7086	0.80	-0.6
9,278	+		GFF7086	0.80	-0.6
9,278	+		GFF7086	0.80	+0.1
9,278	+		GFF7086	0.80	+0.8
9,278	+		GFF7086	0.80	-0.7
9,278	+		GFF7086	0.80	+2.4
9,279	-		GFF7086	0.80	-2.1
9,279	-		GFF7086	0.80	-0.9
9,279	-		GFF7086	0.80	-1.5
9,279	-		GFF7086	0.80	+0.5
9,279	-		GFF7086	0.80	-3.9
9,279	-		GFF7086	0.80	-1.4
9,290	+		GFF7086	0.82	-0.1
9,452	+				+1.2
9,452	+				-1.3
9,453	-				-3.2
9,456	+				-3.3
9,456	+				-0.4
9,456	+				+0.1
9,457	-				+1.0