Strain Fitness in Variovorax sp. SCN45 around GFF7084

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7083 and GFF7084 are separated by 58 nucleotidesGFF7084 and GFF7085 are separated by 238 nucleotides GFF7083 - Mobile element protein, at 5,430 to 7,004 GFF7083 GFF7084 - Mobile element protein, at 7,063 to 7,266 GFF7084 GFF7085 - BUG/TctC family periplasmic protein, at 7,505 to 8,515 GFF7085 Position (kb) 7 8Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 6.095 kb on + strand, within GFF7083at 6.095 kb on + strand, within GFF7083at 6.095 kb on + strand, within GFF7083at 6.095 kb on + strand, within GFF7083at 6.095 kb on + strand, within GFF7083at 6.095 kb on + strand, within GFF7083at 6.095 kb on + strand, within GFF7083at 6.095 kb on + strand, within GFF7083at 6.095 kb on + strand, within GFF7083at 6.095 kb on + strand, within GFF7083at 6.095 kb on + strand, within GFF7083at 6.095 kb on + strand, within GFF7083at 6.095 kb on + strand, within GFF7083at 6.096 kb on - strand, within GFF7083at 6.096 kb on - strand, within GFF7083at 6.096 kb on - strand, within GFF7083at 6.186 kb on + strand, within GFF7083at 6.187 kb on - strand, within GFF7083at 6.187 kb on - strand, within GFF7083at 6.200 kb on + strand, within GFF7083at 6.200 kb on + strand, within GFF7083at 6.200 kb on + strand, within GFF7083at 6.200 kb on + strand, within GFF7083at 6.200 kb on + strand, within GFF7083at 6.200 kb on + strand, within GFF7083at 6.200 kb on + strand, within GFF7083at 6.200 kb on + strand, within GFF7083at 6.200 kb on + strand, within GFF7083at 6.201 kb on - strand, within GFF7083at 6.201 kb on - strand, within GFF7083at 6.201 kb on - strand, within GFF7083at 6.201 kb on - strand, within GFF7083at 6.201 kb on - strand, within GFF7083at 6.201 kb on - strand, within GFF7083at 6.249 kb on + strand, within GFF7083at 6.249 kb on + strand, within GFF7083at 6.249 kb on + strand, within GFF7083at 6.249 kb on + strand, within GFF7083at 6.249 kb on + strand, within GFF7083at 6.249 kb on + strand, within GFF7083at 6.249 kb on + strand, within GFF7083at 6.249 kb on + strand, within GFF7083at 6.249 kb on + strand, within GFF7083at 6.249 kb on + strand, within GFF7083at 6.249 kb on + strand, within GFF7083at 6.249 kb on + strand, within GFF7083at 6.249 kb on + strand, within GFF7083at 6.249 kb on + strand, within GFF7083at 6.249 kb on + strand, within GFF7083at 6.249 kb on + strand, within GFF7083at 6.249 kb on + strand, within GFF7083at 6.250 kb on - strand, within GFF7083at 6.250 kb on - strand, within GFF7083at 6.250 kb on - strand, within GFF7083at 6.250 kb on - strand, within GFF7083at 6.250 kb on - strand, within GFF7083at 6.250 kb on - strand, within GFF7083at 6.250 kb on - strand, within GFF7083at 6.250 kb on - strand, within GFF7083at 6.250 kb on - strand, within GFF7083at 6.250 kb on - strand, within GFF7083at 6.250 kb on - strand, within GFF7083at 6.250 kb on - strand, within GFF7083at 6.250 kb on - strand, within GFF7083at 6.250 kb on - strand, within GFF7083at 6.250 kb on - strand, within GFF7083at 6.250 kb on - strand, within GFF7083at 6.250 kb on - strand, within GFF7083at 6.250 kb on - strand, within GFF7083at 6.250 kb on - strand, within GFF7083at 6.250 kb on - strand, within GFF7083at 6.250 kb on - strand, within GFF7083at 6.339 kb on + strand, within GFF7083at 6.339 kb on + strand, within GFF7083at 6.339 kb on + strand, within GFF7083at 6.339 kb on + strand, within GFF7083at 6.340 kb on - strand, within GFF7083at 6.340 kb on - strand, within GFF7083at 6.340 kb on - strand, within GFF7083at 6.382 kb on - strand, within GFF7083at 6.382 kb on - strand, within GFF7083at 6.382 kb on - strand, within GFF7083at 6.390 kb on + strand, within GFF7083at 6.390 kb on + strand, within GFF7083at 6.390 kb on + strand, within GFF7083at 6.390 kb on + strand, within GFF7083at 6.390 kb on + strand, within GFF7083at 6.390 kb on + strand, within GFF7083at 6.391 kb on - strand, within GFF7083at 6.391 kb on - strand, within GFF7083at 6.391 kb on - strand, within GFF7083at 6.391 kb on - strand, within GFF7083at 6.391 kb on - strand, within GFF7083at 6.391 kb on - strand, within GFF7083at 6.391 kb on - strand, within GFF7083at 6.607 kb on - strand, within GFF7083at 6.607 kb on - strand, within GFF7083at 6.699 kb on + strand, within GFF7083at 6.699 kb on + strand, within GFF7083at 6.699 kb on + strand, within GFF7083at 6.699 kb on + strand, within GFF7083at 6.700 kb on - strand, within GFF7083at 6.700 kb on - strand, within GFF7083at 6.796 kb on + strand, within GFF7083at 6.796 kb on + strand, within GFF7083at 6.797 kb on - strand, within GFF7083at 6.797 kb on - strand, within GFF7083at 6.797 kb on - strand, within GFF7083at 6.797 kb on - strand, within GFF7083at 6.861 kb on + strandat 6.861 kb on + strandat 6.903 kb on + strandat 6.904 kb on - strandat 6.909 kb on + strandat 6.909 kb on + strandat 6.910 kb on - strandat 6.910 kb on - strandat 6.960 kb on + strandat 6.960 kb on + strandat 6.960 kb on + strandat 6.961 kb on - strandat 6.961 kb on - strandat 6.961 kb on - strandat 7.002 kb on + strandat 7.003 kb on - strandat 7.003 kb on - strandat 7.003 kb on - strandat 7.003 kb on - strandat 7.059 kb on + strandat 7.060 kb on - strandat 7.060 kb on - strandat 7.106 kb on - strand, within GFF7084at 7.180 kb on + strand, within GFF7084at 7.180 kb on + strand, within GFF7084at 7.180 kb on + strand, within GFF7084at 7.180 kb on + strand, within GFF7084at 7.180 kb on + strand, within GFF7084at 7.180 kb on + strand, within GFF7084at 7.181 kb on - strand, within GFF7084at 7.181 kb on - strand, within GFF7084at 7.181 kb on - strand, within GFF7084at 7.248 kb on - strandat 7.255 kb on + strandat 7.255 kb on + strandat 7.256 kb on - strandat 7.301 kb on + strandat 7.302 kb on - strandat 7.302 kb on - strandat 7.302 kb on - strandat 7.361 kb on + strandat 7.361 kb on + strandat 7.361 kb on + strandat 7.362 kb on - strandat 7.362 kb on - strandat 7.459 kb on + strandat 7.459 kb on + strandat 7.459 kb on + strandat 7.460 kb on - strandat 7.460 kb on - strandat 7.460 kb on - strandat 7.506 kb on + strandat 7.699 kb on + strand, within GFF7085at 7.741 kb on - strand, within GFF7085at 7.798 kb on + strand, within GFF7085at 7.798 kb on + strand, within GFF7085at 7.798 kb on + strand, within GFF7085at 7.798 kb on + strand, within GFF7085at 7.799 kb on - strand, within GFF7085at 7.838 kb on + strand, within GFF7085at 7.839 kb on - strand, within GFF7085at 7.839 kb on - strand, within GFF7085at 7.868 kb on + strand, within GFF7085at 7.869 kb on - strand, within GFF7085at 7.926 kb on + strand, within GFF7085at 7.926 kb on + strand, within GFF7085at 7.926 kb on + strand, within GFF7085at 7.926 kb on + strand, within GFF7085at 7.926 kb on + strand, within GFF7085at 7.927 kb on - strand, within GFF7085at 7.927 kb on - strand, within GFF7085at 7.927 kb on - strand, within GFF7085at 7.927 kb on - strand, within GFF7085at 7.927 kb on - strand, within GFF7085at 7.927 kb on - strand, within GFF7085at 7.927 kb on - strand, within GFF7085at 7.927 kb on - strand, within GFF7085at 7.927 kb on - strand, within GFF7085at 7.927 kb on - strand, within GFF7085at 7.927 kb on - strand, within GFF7085at 7.927 kb on - strand, within GFF7085at 7.945 kb on + strand, within GFF7085at 7.946 kb on - strand, within GFF7085at 7.946 kb on - strand, within GFF7085at 7.979 kb on + strand, within GFF7085at 7.979 kb on + strand, within GFF7085at 7.980 kb on - strand, within GFF7085at 7.980 kb on - strand, within GFF7085at 8.045 kb on + strand, within GFF7085at 8.045 kb on + strand, within GFF7085at 8.045 kb on + strand, within GFF7085at 8.045 kb on + strand, within GFF7085at 8.046 kb on - strand, within GFF7085at 8.046 kb on - strand, within GFF7085at 8.046 kb on - strand, within GFF7085at 8.046 kb on - strand, within GFF7085at 8.046 kb on - strand, within GFF7085at 8.046 kb on - strand, within GFF7085at 8.046 kb on - strand, within GFF7085at 8.046 kb on - strand, within GFF7085at 8.085 kb on - strand, within GFF7085at 8.114 kb on + strand, within GFF7085at 8.114 kb on + strand, within GFF7085at 8.115 kb on - strand, within GFF7085at 8.115 kb on - strand, within GFF7085at 8.115 kb on - strand, within GFF7085at 8.148 kb on + strand, within GFF7085at 8.148 kb on + strand, within GFF7085at 8.148 kb on + strand, within GFF7085at 8.148 kb on + strand, within GFF7085at 8.149 kb on - strand, within GFF7085at 8.149 kb on - strand, within GFF7085at 8.149 kb on - strand, within GFF7085at 8.176 kb on + strand, within GFF7085at 8.214 kb on + strand, within GFF7085at 8.215 kb on - strand, within GFF7085at 8.215 kb on - strand, within GFF7085at 8.215 kb on - strand, within GFF7085at 8.215 kb on - strand, within GFF7085at 8.215 kb on - strand, within GFF7085

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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6,095 + GFF7083 0.42 +1.1
6,095 + GFF7083 0.42 +0.4
6,095 + GFF7083 0.42 +0.1
6,095 + GFF7083 0.42 +0.2
6,095 + GFF7083 0.42 -1.2
6,095 + GFF7083 0.42 +3.4
6,095 + GFF7083 0.42 +0.1
6,095 + GFF7083 0.42 +0.8
6,095 + GFF7083 0.42 +2.1
6,095 + GFF7083 0.42 +1.2
6,095 + GFF7083 0.42 -2.3
6,095 + GFF7083 0.42 -0.3
6,095 + GFF7083 0.42 +0.7
6,096 - GFF7083 0.42 +0.9
6,096 - GFF7083 0.42 -2.6
6,096 - GFF7083 0.42 -1.3
6,186 + GFF7083 0.48 +0.4
6,187 - GFF7083 0.48 -1.6
6,187 - GFF7083 0.48 +1.7
6,200 + GFF7083 0.49 -1.1
6,200 + GFF7083 0.49 -1.4
6,200 + GFF7083 0.49 +1.4
6,200 + GFF7083 0.49 -0.8
6,200 + GFF7083 0.49 -1.0
6,200 + GFF7083 0.49 +0.5
6,200 + GFF7083 0.49 -0.2
6,200 + GFF7083 0.49 -1.3
6,200 + GFF7083 0.49 +1.9
6,201 - GFF7083 0.49 -3.2
6,201 - GFF7083 0.49 +1.4
6,201 - GFF7083 0.49 +0.3
6,201 - GFF7083 0.49 -1.6
6,201 - GFF7083 0.49 +0.3
6,201 - GFF7083 0.49 -0.1
6,249 + GFF7083 0.52 +1.6
6,249 + GFF7083 0.52 +0.5
6,249 + GFF7083 0.52 +0.7
6,249 + GFF7083 0.52 -2.3
6,249 + GFF7083 0.52 -0.2
6,249 + GFF7083 0.52 -0.6
6,249 + GFF7083 0.52 -2.6
6,249 + GFF7083 0.52 +0.4
6,249 + GFF7083 0.52 -0.2
6,249 + GFF7083 0.52 +0.5
6,249 + GFF7083 0.52 +0.0
6,249 + GFF7083 0.52 +2.3
6,249 + GFF7083 0.52 +0.1
6,249 + GFF7083 0.52 -0.4
6,249 + GFF7083 0.52 +2.6
6,249 + GFF7083 0.52 +0.4
6,249 + GFF7083 0.52 -2.1
6,250 - GFF7083 0.52 -0.2
6,250 - GFF7083 0.52 +1.0
6,250 - GFF7083 0.52 -0.9
6,250 - GFF7083 0.52 +2.6
6,250 - GFF7083 0.52 +0.7
6,250 - GFF7083 0.52 +0.8
6,250 - GFF7083 0.52 +2.8
6,250 - GFF7083 0.52 +1.1
6,250 - GFF7083 0.52 -1.3
6,250 - GFF7083 0.52 -1.8
6,250 - GFF7083 0.52 +1.0
6,250 - GFF7083 0.52 -1.1
6,250 - GFF7083 0.52 -0.4
6,250 - GFF7083 0.52 -0.1
6,250 - GFF7083 0.52 +2.1
6,250 - GFF7083 0.52 -0.6
6,250 - GFF7083 0.52 -0.2
6,250 - GFF7083 0.52 -0.9
6,250 - GFF7083 0.52 +1.5
6,250 - GFF7083 0.52 -0.6
6,250 - GFF7083 0.52 +5.0
6,339 + GFF7083 0.58 -2.5
6,339 + GFF7083 0.58 -1.5
6,339 + GFF7083 0.58 +0.9
6,339 + GFF7083 0.58 -0.4
6,340 - GFF7083 0.58 -2.6
6,340 - GFF7083 0.58 +1.4
6,340 - GFF7083 0.58 +1.4
6,382 - GFF7083 0.60 +0.3
6,382 - GFF7083 0.60 -1.6
6,382 - GFF7083 0.60 -0.4
6,390 + GFF7083 0.61 -1.1
6,390 + GFF7083 0.61 +0.1
6,390 + GFF7083 0.61 -1.8
6,390 + GFF7083 0.61 -2.1
6,390 + GFF7083 0.61 +2.7
6,390 + GFF7083 0.61 +3.2
6,391 - GFF7083 0.61 +1.1
6,391 - GFF7083 0.61 +1.7
6,391 - GFF7083 0.61 -1.2
6,391 - GFF7083 0.61 -0.2
6,391 - GFF7083 0.61 +0.8
6,391 - GFF7083 0.61 +1.5
6,391 - GFF7083 0.61 -0.3
6,607 - GFF7083 0.75 -1.6
6,607 - GFF7083 0.75 +1.1
6,699 + GFF7083 0.81 +0.9
6,699 + GFF7083 0.81 -0.3
6,699 + GFF7083 0.81 -1.1
6,699 + GFF7083 0.81 -0.2
6,700 - GFF7083 0.81 -3.1
6,700 - GFF7083 0.81 +0.9
6,796 + GFF7083 0.87 +0.0
6,796 + GFF7083 0.87 +0.5
6,797 - GFF7083 0.87 -1.5
6,797 - GFF7083 0.87 -2.3
6,797 - GFF7083 0.87 -2.2
6,797 - GFF7083 0.87 +0.9
6,861 + -0.5
6,861 + -1.9
6,903 + +0.4
6,904 - +1.5
6,909 + +0.9
6,909 + -0.2
6,910 - -0.1
6,910 - +1.4
6,960 + +0.8
6,960 + +0.8
6,960 + +0.4
6,961 - +1.0
6,961 - -2.1
6,961 - +1.5
7,002 + -2.9
7,003 - +0.4
7,003 - +0.6
7,003 - -1.3
7,003 - -1.4
7,059 + -0.4
7,060 - -1.5
7,060 - +1.9
7,106 - GFF7084 0.21 -2.5
7,180 + GFF7084 0.57 -2.8
7,180 + GFF7084 0.57 +1.0
7,180 + GFF7084 0.57 -1.5
7,180 + GFF7084 0.57 -1.9
7,180 + GFF7084 0.57 -1.9
7,180 + GFF7084 0.57 -2.7
7,181 - GFF7084 0.58 +1.3
7,181 - GFF7084 0.58 -1.5
7,181 - GFF7084 0.58 -2.3
7,248 - -0.4
7,255 + +1.3
7,255 + -0.4
7,256 - +0.6
7,301 + +1.5
7,302 - +0.7
7,302 - -1.6
7,302 - -2.4
7,361 + -0.8
7,361 + -1.6
7,361 + -1.2
7,362 - -1.6
7,362 - -0.7
7,459 + +0.1
7,459 + -0.4
7,459 + -2.5
7,460 - +0.4
7,460 - +1.1
7,460 - +2.0
7,506 + -1.4
7,699 + GFF7085 0.19 +1.3
7,741 - GFF7085 0.23 +0.2
7,798 + GFF7085 0.29 +0.8
7,798 + GFF7085 0.29 +0.4
7,798 + GFF7085 0.29 -2.7
7,798 + GFF7085 0.29 +0.2
7,799 - GFF7085 0.29 -1.8
7,838 + GFF7085 0.33 -3.2
7,839 - GFF7085 0.33 +2.4
7,839 - GFF7085 0.33 +1.6
7,868 + GFF7085 0.36 +2.4
7,869 - GFF7085 0.36 -2.1
7,926 + GFF7085 0.42 +0.1
7,926 + GFF7085 0.42 -0.3
7,926 + GFF7085 0.42 +0.3
7,926 + GFF7085 0.42 -0.3
7,926 + GFF7085 0.42 +1.8
7,927 - GFF7085 0.42 +1.5
7,927 - GFF7085 0.42 -1.0
7,927 - GFF7085 0.42 -0.8
7,927 - GFF7085 0.42 -1.5
7,927 - GFF7085 0.42 -2.6
7,927 - GFF7085 0.42 -1.9
7,927 - GFF7085 0.42 -1.5
7,927 - GFF7085 0.42 -1.4
7,927 - GFF7085 0.42 -0.6
7,927 - GFF7085 0.42 -0.6
7,927 - GFF7085 0.42 -2.1
7,927 - GFF7085 0.42 -1.4
7,945 + GFF7085 0.44 +1.0
7,946 - GFF7085 0.44 -0.2
7,946 - GFF7085 0.44 +1.4
7,979 + GFF7085 0.47 +0.4
7,979 + GFF7085 0.47 +1.4
7,980 - GFF7085 0.47 +0.7
7,980 - GFF7085 0.47 +1.8
8,045 + GFF7085 0.53 -1.5
8,045 + GFF7085 0.53 -1.4
8,045 + GFF7085 0.53 -0.1
8,045 + GFF7085 0.53 -0.4
8,046 - GFF7085 0.54 -0.9
8,046 - GFF7085 0.54 -1.4
8,046 - GFF7085 0.54 -3.2
8,046 - GFF7085 0.54 -1.0
8,046 - GFF7085 0.54 -0.6
8,046 - GFF7085 0.54 +0.2
8,046 - GFF7085 0.54 -3.1
8,046 - GFF7085 0.54 -2.0
8,085 - GFF7085 0.57 +0.5
8,114 + GFF7085 0.60 -0.8
8,114 + GFF7085 0.60 -3.0
8,115 - GFF7085 0.60 +0.0
8,115 - GFF7085 0.60 +0.3
8,115 - GFF7085 0.60 -4.0
8,148 + GFF7085 0.64 +0.7
8,148 + GFF7085 0.64 -0.4
8,148 + GFF7085 0.64 +2.7
8,148 + GFF7085 0.64 -0.5
8,149 - GFF7085 0.64 -0.2
8,149 - GFF7085 0.64 +1.3
8,149 - GFF7085 0.64 +0.4
8,176 + GFF7085 0.66 -0.7
8,214 + GFF7085 0.70 -2.6
8,215 - GFF7085 0.70 -1.9
8,215 - GFF7085 0.70 +1.8
8,215 - GFF7085 0.70 +0.7
8,215 - GFF7085 0.70 +0.1
8,215 - GFF7085 0.70 +2.5

Or see this region's nucleotide sequence