Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6953 and GFF6954 are separated by 183 nucleotides GFF6954 and GFF6955 are separated by 7 nucleotides GFF6955 and GFF6956 are separated by 260 nucleotides GFF6956 and GFF6957 are separated by 2 nucleotides
GFF6953 - Universal stress protein UspA and related nucleotide-binding proteins, at 29,511 to 30,335
GFF6953
GFF6954 - no description, at 30,519 to 30,722
GFF6954
GFF6955 - no description, at 30,730 to 30,864
GFF6955
GFF6956 - Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein, at 31,125 to 31,820
GFF6956
GFF6957 - Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), at 31,823 to 33,229
GFF6957
Position (kb) 31
32 Strain fitness (log2 ratio) -2
-1
0
1
2 at 30.187 kb on + strand, within GFF6953 at 30.187 kb on + strand, within GFF6953 at 31.637 kb on - strand, within GFF6956 at 31.863 kb on + strand at 32.184 kb on + strand, within GFF6957 at 32.185 kb on - strand, within GFF6957 at 32.341 kb on - strand, within GFF6957 at 32.346 kb on + strand, within GFF6957 at 32.347 kb on - strand, within GFF6957 at 32.466 kb on + strand, within GFF6957 at 32.466 kb on + strand, within GFF6957 at 32.467 kb on - strand, within GFF6957 at 32.473 kb on - strand, within GFF6957 at 32.556 kb on + strand, within GFF6957 at 32.557 kb on - strand, within GFF6957
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 30,187 + GFF6953 0.82 +0.4 30,187 + GFF6953 0.82 +2.3 31,637 - GFF6956 0.74 -0.8 31,863 + -1.0 32,184 + GFF6957 0.26 -1.9 32,185 - GFF6957 0.26 +0.0 32,341 - GFF6957 0.37 -0.5 32,346 + GFF6957 0.37 +1.4 32,347 - GFF6957 0.37 -0.0 32,466 + GFF6957 0.46 +2.0 32,466 + GFF6957 0.46 -2.6 32,467 - GFF6957 0.46 -0.9 32,473 - GFF6957 0.46 -2.0 32,556 + GFF6957 0.52 -0.0 32,557 - GFF6957 0.52 -0.4
Or see this region's nucleotide sequence