Strain Fitness in Variovorax sp. SCN45 around GFF6936

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
10,319	+				+1.6
10,319	+				-0.9
10,319	+				+0.5
10,319	+				+1.0
10,319	+				+1.5
10,320	-				+2.1
10,320	-				+0.2
10,320	-				+2.0
10,320	-				-1.0
10,320	-				-2.4
10,320	-				-0.0
10,451	+		GFF6934	0.31	-1.4
10,451	+		GFF6934	0.31	-4.1
10,452	-		GFF6934	0.31	+0.2
10,452	-		GFF6934	0.31	-1.0
10,452	-		GFF6934	0.31	-2.3
10,836	+				-1.9
10,836	+				+0.3
10,837	-				+0.7
10,837	-				-0.3
10,837	-				-1.1
11,107	+				-3.4
11,108	-				-0.0
11,353	+		GFF6936	0.43	-2.1
11,353	+		GFF6936	0.43	+0.5
11,353	+		GFF6936	0.43	-0.8
11,353	+		GFF6936	0.43	-1.9
11,353	+		GFF6936	0.43	+1.6
11,354	-		GFF6936	0.43	+2.6
11,354	-		GFF6936	0.43	-1.2
11,354	-		GFF6936	0.43	-4.9
11,354	-		GFF6936	0.43	+1.8
11,452	+		GFF6936	0.56	+2.0
11,452	+		GFF6936	0.56	+2.2
11,452	+		GFF6936	0.56	-0.4
11,453	-		GFF6936	0.57	+0.9
11,823	+				-0.7
11,823	+				+0.1
11,824	-				-0.1
11,862	+				+1.3
11,863	-				-0.0
11,884	-		GFF6937	0.11	+1.1
11,899	-		GFF6937	0.13	+1.9
11,953	-		GFF6937	0.18	-1.7
12,222	+		GFF6937	0.43	-2.9
12,322	-		GFF6937	0.52	-0.3
12,351	+		GFF6937	0.54	+0.0
12,351	+		GFF6937	0.54	-2.3
12,351	+		GFF6937	0.54	-2.9
12,378	+		GFF6937	0.57	-0.7
12,378	+		GFF6937	0.57	-0.4
12,379	-		GFF6937	0.57	-0.8
12,400	-		GFF6937	0.59	-1.0
12,429	+		GFF6937	0.62	-2.0
12,429	+		GFF6937	0.62	+0.2
12,489	+		GFF6937	0.67	+0.6
12,490	-		GFF6937	0.67	-0.8
12,490	-		GFF6937	0.67	-0.1
12,490	-		GFF6937	0.67	-1.0
12,519	+		GFF6937	0.70	+1.1
12,519	+		GFF6937	0.70	-0.6
12,585	+		GFF6937	0.76	-0.4
12,586	-		GFF6937	0.76	+1.3
12,586	-		GFF6937	0.76	-0.4
12,586	-		GFF6937	0.76	-2.7
12,586	-		GFF6937	0.76	-3.6
12,700	-		GFF6937	0.87	+0.3
12,700	-		GFF6937	0.87	-0.0
12,700	-		GFF6937	0.87	+0.1
12,700	-		GFF6937	0.87	-0.2