Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6905 and GFF6906 are separated by 5 nucleotides GFF6906 and GFF6907 are separated by 44 nucleotides GFF6907 and GFF6908 overlap by 9 nucleotides
GFF6905 - Chloride channel protein, at 40,014 to 41,783
GFF6905
GFF6906 - Transcriptional regulator, MarR family, at 41,789 to 42,214
GFF6906
GFF6907 - Acetyltransferase, GNAT family, at 42,259 to 42,867
GFF6907
GFF6908 - putative membrane protein, at 42,859 to 43,572
GFF6908
Position (kb) 41
42
43 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 40.883 kb on - strand, within GFF6905 at 40.883 kb on - strand, within GFF6905 at 40.927 kb on - strand, within GFF6905 at 40.999 kb on + strand, within GFF6905 at 40.999 kb on + strand, within GFF6905 at 40.999 kb on + strand, within GFF6905 at 41.000 kb on - strand, within GFF6905 at 41.000 kb on - strand, within GFF6905 at 41.000 kb on - strand, within GFF6905 at 41.579 kb on + strand, within GFF6905 at 41.580 kb on - strand, within GFF6905 at 42.084 kb on + strand, within GFF6906 at 42.084 kb on + strand, within GFF6906 at 42.084 kb on + strand, within GFF6906 at 42.085 kb on - strand, within GFF6906 at 42.085 kb on - strand, within GFF6906 at 42.262 kb on + strand at 42.262 kb on + strand at 42.262 kb on + strand at 42.263 kb on - strand at 42.263 kb on - strand at 42.263 kb on - strand at 42.264 kb on + strand at 42.264 kb on + strand at 42.398 kb on - strand, within GFF6907 at 43.124 kb on + strand, within GFF6908 at 43.124 kb on + strand, within GFF6908 at 43.125 kb on - strand, within GFF6908
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 40,883 - GFF6905 0.49 +0.5 40,883 - GFF6905 0.49 -1.9 40,927 - GFF6905 0.52 +1.1 40,999 + GFF6905 0.56 -1.1 40,999 + GFF6905 0.56 -1.7 40,999 + GFF6905 0.56 -2.1 41,000 - GFF6905 0.56 +0.5 41,000 - GFF6905 0.56 +0.0 41,000 - GFF6905 0.56 -1.2 41,579 + GFF6905 0.88 +2.1 41,580 - GFF6905 0.88 -3.8 42,084 + GFF6906 0.69 +1.4 42,084 + GFF6906 0.69 +1.4 42,084 + GFF6906 0.69 +0.3 42,085 - GFF6906 0.69 -1.5 42,085 - GFF6906 0.69 +2.1 42,262 + -0.7 42,262 + -2.5 42,262 + -3.2 42,263 - +1.3 42,263 - +0.4 42,263 - -0.5 42,264 + +1.3 42,264 + -2.6 42,398 - GFF6907 0.23 +0.3 43,124 + GFF6908 0.37 -0.5 43,124 + GFF6908 0.37 +0.4 43,125 - GFF6908 0.37 -0.4
Or see this region's nucleotide sequence