Strain Fitness in Variovorax sp. SCN45 around GFF6861

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6860 and GFF6861 overlap by 4 nucleotidesGFF6861 and GFF6862 are separated by 93 nucleotides GFF6860 - Epoxide hydrolase (EC 3.3.2.9), at 53,152 to 54,186 GFF6860 GFF6861 - no description, at 54,183 to 54,347 GFF6861 GFF6862 - Two-component system sensor histidine kinase, at 54,441 to 55,793 GFF6862 Position (kb) 54 55Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 53.220 kb on + strandat 53.220 kb on + strandat 53.220 kb on + strandat 53.220 kb on + strandat 53.220 kb on + strandat 53.221 kb on - strandat 53.221 kb on - strandat 53.221 kb on - strandat 53.221 kb on - strandat 53.221 kb on - strandat 53.221 kb on - strandat 53.221 kb on - strandat 53.373 kb on - strand, within GFF6860at 53.381 kb on + strand, within GFF6860at 53.381 kb on + strand, within GFF6860at 53.381 kb on + strand, within GFF6860at 53.381 kb on + strand, within GFF6860at 53.382 kb on - strand, within GFF6860at 53.382 kb on - strand, within GFF6860at 53.393 kb on - strand, within GFF6860at 53.420 kb on + strand, within GFF6860at 53.420 kb on + strand, within GFF6860at 53.445 kb on - strand, within GFF6860at 53.445 kb on - strand, within GFF6860at 53.445 kb on - strand, within GFF6860at 53.496 kb on - strand, within GFF6860at 53.496 kb on - strand, within GFF6860at 53.588 kb on + strand, within GFF6860at 53.589 kb on - strand, within GFF6860at 53.589 kb on - strand, within GFF6860at 53.589 kb on - strand, within GFF6860at 53.589 kb on - strand, within GFF6860at 53.589 kb on - strand, within GFF6860at 53.591 kb on + strand, within GFF6860at 53.591 kb on + strand, within GFF6860at 53.591 kb on + strand, within GFF6860at 53.591 kb on + strand, within GFF6860at 53.592 kb on - strand, within GFF6860at 53.592 kb on - strand, within GFF6860at 53.592 kb on - strand, within GFF6860at 53.597 kb on + strand, within GFF6860at 53.663 kb on + strand, within GFF6860at 53.663 kb on + strand, within GFF6860at 53.663 kb on + strand, within GFF6860at 53.664 kb on - strand, within GFF6860at 53.664 kb on - strand, within GFF6860at 53.664 kb on - strand, within GFF6860at 53.664 kb on - strand, within GFF6860at 53.664 kb on - strand, within GFF6860at 53.744 kb on + strand, within GFF6860at 53.745 kb on - strand, within GFF6860at 53.930 kb on + strand, within GFF6860at 53.930 kb on + strand, within GFF6860at 53.930 kb on + strand, within GFF6860at 53.930 kb on + strand, within GFF6860at 53.930 kb on + strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.951 kb on + strand, within GFF6860at 53.951 kb on + strand, within GFF6860at 53.999 kb on + strand, within GFF6860at 53.999 kb on + strand, within GFF6860at 53.999 kb on + strand, within GFF6860at 53.999 kb on + strand, within GFF6860at 54.002 kb on + strand, within GFF6860at 54.003 kb on - strand, within GFF6860at 54.243 kb on + strand, within GFF6861at 54.243 kb on + strand, within GFF6861at 54.243 kb on + strand, within GFF6861at 54.243 kb on + strand, within GFF6861at 54.244 kb on - strand, within GFF6861at 54.244 kb on - strand, within GFF6861at 54.244 kb on - strand, within GFF6861at 54.244 kb on - strand, within GFF6861at 54.244 kb on - strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.277 kb on - strand, within GFF6861at 54.277 kb on - strand, within GFF6861at 54.277 kb on - strand, within GFF6861at 54.277 kb on - strand, within GFF6861at 54.286 kb on + strand, within GFF6861at 54.286 kb on + strand, within GFF6861at 54.287 kb on - strand, within GFF6861at 54.287 kb on - strand, within GFF6861at 54.305 kb on - strand, within GFF6861at 54.314 kb on + strand, within GFF6861at 54.314 kb on + strand, within GFF6861at 54.314 kb on + strand, within GFF6861at 54.314 kb on + strand, within GFF6861at 54.314 kb on + strand, within GFF6861at 54.315 kb on - strand, within GFF6861at 54.315 kb on - strand, within GFF6861at 54.315 kb on - strand, within GFF6861at 54.315 kb on - strand, within GFF6861at 54.315 kb on - strand, within GFF6861at 54.315 kb on - strand, within GFF6861at 54.315 kb on - strand, within GFF6861at 54.354 kb on + strandat 54.354 kb on + strandat 54.355 kb on - strandat 54.355 kb on - strandat 54.383 kb on - strandat 54.394 kb on + strandat 54.394 kb on + strandat 54.394 kb on + strandat 54.394 kb on + strandat 54.394 kb on + strandat 54.394 kb on + strandat 54.395 kb on - strandat 54.395 kb on - strandat 54.395 kb on - strandat 54.395 kb on - strandat 54.428 kb on + strandat 54.428 kb on + strandat 54.428 kb on + strandat 54.428 kb on + strandat 54.429 kb on - strandat 54.429 kb on - strandat 54.429 kb on - strandat 54.429 kb on - strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.579 kb on + strand, within GFF6862at 54.714 kb on + strand, within GFF6862at 54.714 kb on + strand, within GFF6862at 54.715 kb on - strand, within GFF6862at 54.955 kb on + strand, within GFF6862at 54.955 kb on + strand, within GFF6862at 54.956 kb on - strand, within GFF6862at 54.988 kb on - strand, within GFF6862at 55.147 kb on - strand, within GFF6862at 55.147 kb on - strand, within GFF6862at 55.311 kb on + strand, within GFF6862at 55.311 kb on + strand, within GFF6862at 55.312 kb on - strand, within GFF6862at 55.312 kb on - strand, within GFF6862at 55.312 kb on - strand, within GFF6862at 55.312 kb on - strand, within GFF6862

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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53,220 + +1.4
53,220 + -1.0
53,220 + -0.8
53,220 + -0.4
53,220 + -2.9
53,221 - -1.4
53,221 - -3.1
53,221 - +1.2
53,221 - -0.6
53,221 - +0.1
53,221 - -0.8
53,221 - +0.1
53,373 - GFF6860 0.21 -0.8
53,381 + GFF6860 0.22 -2.2
53,381 + GFF6860 0.22 -2.0
53,381 + GFF6860 0.22 +2.5
53,381 + GFF6860 0.22 -0.8
53,382 - GFF6860 0.22 -0.5
53,382 - GFF6860 0.22 +0.3
53,393 - GFF6860 0.23 -2.6
53,420 + GFF6860 0.26 -2.6
53,420 + GFF6860 0.26 +1.5
53,445 - GFF6860 0.28 +0.8
53,445 - GFF6860 0.28 +0.7
53,445 - GFF6860 0.28 -0.4
53,496 - GFF6860 0.33 -0.6
53,496 - GFF6860 0.33 -0.8
53,588 + GFF6860 0.42 +2.4
53,589 - GFF6860 0.42 -2.6
53,589 - GFF6860 0.42 -2.5
53,589 - GFF6860 0.42 -0.2
53,589 - GFF6860 0.42 -0.4
53,589 - GFF6860 0.42 +1.5
53,591 + GFF6860 0.42 +0.1
53,591 + GFF6860 0.42 +0.1
53,591 + GFF6860 0.42 -3.7
53,591 + GFF6860 0.42 -0.7
53,592 - GFF6860 0.43 -0.8
53,592 - GFF6860 0.43 -1.0
53,592 - GFF6860 0.43 +2.8
53,597 + GFF6860 0.43 -1.8
53,663 + GFF6860 0.49 +1.0
53,663 + GFF6860 0.49 +1.6
53,663 + GFF6860 0.49 -0.2
53,664 - GFF6860 0.49 -2.9
53,664 - GFF6860 0.49 -0.8
53,664 - GFF6860 0.49 +0.6
53,664 - GFF6860 0.49 -0.9
53,664 - GFF6860 0.49 +0.4
53,744 + GFF6860 0.57 -3.0
53,745 - GFF6860 0.57 +1.9
53,930 + GFF6860 0.75 +0.6
53,930 + GFF6860 0.75 +0.2
53,930 + GFF6860 0.75 -2.7
53,930 + GFF6860 0.75 -0.7
53,930 + GFF6860 0.75 +0.5
53,931 - GFF6860 0.75 +1.9
53,931 - GFF6860 0.75 -0.6
53,931 - GFF6860 0.75 -2.4
53,931 - GFF6860 0.75 -2.1
53,931 - GFF6860 0.75 -2.3
53,931 - GFF6860 0.75 -4.0
53,951 + GFF6860 0.77 -1.7
53,951 + GFF6860 0.77 +1.7
53,999 + GFF6860 0.82 +1.6
53,999 + GFF6860 0.82 -1.4
53,999 + GFF6860 0.82 +0.5
53,999 + GFF6860 0.82 +1.3
54,002 + GFF6860 0.82 -2.4
54,003 - GFF6860 0.82 +0.4
54,243 + GFF6861 0.36 +1.3
54,243 + GFF6861 0.36 -1.3
54,243 + GFF6861 0.36 -1.0
54,243 + GFF6861 0.36 -1.2
54,244 - GFF6861 0.37 -1.4
54,244 - GFF6861 0.37 -0.4
54,244 - GFF6861 0.37 -0.2
54,244 - GFF6861 0.37 -0.4
54,244 - GFF6861 0.37 -1.5
54,276 + GFF6861 0.56 -0.0
54,276 + GFF6861 0.56 -0.2
54,276 + GFF6861 0.56 -2.1
54,276 + GFF6861 0.56 +1.4
54,276 + GFF6861 0.56 -2.2
54,276 + GFF6861 0.56 -2.5
54,276 + GFF6861 0.56 -0.5
54,276 + GFF6861 0.56 -0.7
54,276 + GFF6861 0.56 +0.7
54,277 - GFF6861 0.57 -2.4
54,277 - GFF6861 0.57 -0.4
54,277 - GFF6861 0.57 -0.0
54,277 - GFF6861 0.57 -2.3
54,286 + GFF6861 0.62 -2.2
54,286 + GFF6861 0.62 +1.6
54,287 - GFF6861 0.63 +1.1
54,287 - GFF6861 0.63 -0.9
54,305 - GFF6861 0.74 -0.1
54,314 + GFF6861 0.79 -2.0
54,314 + GFF6861 0.79 -0.0
54,314 + GFF6861 0.79 -0.4
54,314 + GFF6861 0.79 -1.2
54,314 + GFF6861 0.79 -1.0
54,315 - GFF6861 0.80 +0.6
54,315 - GFF6861 0.80 -1.9
54,315 - GFF6861 0.80 -0.4
54,315 - GFF6861 0.80 +1.4
54,315 - GFF6861 0.80 -2.0
54,315 - GFF6861 0.80 +0.4
54,315 - GFF6861 0.80 -2.3
54,354 + -4.1
54,354 + -1.5
54,355 - +1.0
54,355 - -2.4
54,383 - +0.7
54,394 + -0.4
54,394 + +0.6
54,394 + -1.7
54,394 + -1.2
54,394 + +1.9
54,394 + -3.1
54,395 - -3.3
54,395 - -1.9
54,395 - +0.0
54,395 - -2.1
54,428 + +1.3
54,428 + -2.0
54,428 + +0.2
54,428 + -4.5
54,429 - -0.6
54,429 - -1.4
54,429 - -0.0
54,429 - -1.6
54,431 - -0.5
54,431 - -2.1
54,431 - -1.0
54,431 - +0.6
54,579 + GFF6862 0.10 -3.4
54,714 + GFF6862 0.20 -2.6
54,714 + GFF6862 0.20 -3.0
54,715 - GFF6862 0.20 -1.9
54,955 + GFF6862 0.38 +0.4
54,955 + GFF6862 0.38 +0.6
54,956 - GFF6862 0.38 +0.6
54,988 - GFF6862 0.40 -0.4
55,147 - GFF6862 0.52 -0.4
55,147 - GFF6862 0.52 +1.2
55,311 + GFF6862 0.64 -0.2
55,311 + GFF6862 0.64 -3.6
55,312 - GFF6862 0.64 -3.0
55,312 - GFF6862 0.64 -0.0
55,312 - GFF6862 0.64 -0.8
55,312 - GFF6862 0.64 -2.5

Or see this region's nucleotide sequence