Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6770 and GFF6771 overlap by 4 nucleotides GFF6771 and GFF6772 are separated by 0 nucleotides GFF6772 and GFF6773 are separated by 150 nucleotides
GFF6770 - 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21), at 16,198 to 16,842
GFF6770
GFF6771 - 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58), at 16,839 to 17,750
GFF6771
GFF6772 - L-arabonate dehydratase (EC 4.2.1.25), at 17,751 to 19,487
GFF6772
GFF6773 - Transcriptional regulator, GntR family, at 19,638 to 20,381
GFF6773
Position (kb) 17
18
19
20 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 17.056 kb on + strand, within GFF6771 at 17.056 kb on + strand, within GFF6771 at 17.056 kb on + strand, within GFF6771 at 17.056 kb on + strand, within GFF6771 at 17.057 kb on - strand, within GFF6771 at 17.057 kb on - strand, within GFF6771 at 17.057 kb on - strand, within GFF6771 at 17.057 kb on - strand, within GFF6771 at 17.057 kb on - strand, within GFF6771 at 17.057 kb on - strand, within GFF6771 at 17.239 kb on + strand, within GFF6771 at 17.239 kb on + strand, within GFF6771 at 17.239 kb on + strand, within GFF6771 at 17.240 kb on - strand, within GFF6771 at 17.240 kb on - strand, within GFF6771 at 17.257 kb on + strand, within GFF6771 at 17.257 kb on + strand, within GFF6771 at 17.257 kb on + strand, within GFF6771 at 17.257 kb on + strand, within GFF6771 at 17.258 kb on - strand, within GFF6771 at 17.258 kb on - strand, within GFF6771 at 17.258 kb on - strand, within GFF6771 at 17.258 kb on - strand, within GFF6771 at 17.736 kb on + strand at 17.752 kb on + strand at 17.752 kb on + strand at 17.752 kb on + strand at 17.752 kb on + strand at 17.753 kb on - strand at 17.753 kb on - strand at 17.753 kb on - strand at 17.753 kb on - strand at 17.842 kb on + strand at 17.842 kb on + strand at 17.843 kb on - strand at 17.855 kb on - strand at 18.040 kb on + strand, within GFF6772 at 18.041 kb on - strand, within GFF6772 at 18.400 kb on + strand, within GFF6772 at 18.400 kb on + strand, within GFF6772 at 18.512 kb on - strand, within GFF6772 at 18.532 kb on + strand, within GFF6772 at 18.532 kb on + strand, within GFF6772 at 18.533 kb on - strand, within GFF6772 at 18.533 kb on - strand, within GFF6772 at 19.184 kb on - strand, within GFF6772 at 19.261 kb on + strand, within GFF6772 at 19.405 kb on + strand at 19.405 kb on + strand at 19.406 kb on - strand at 19.406 kb on - strand at 19.406 kb on - strand at 19.502 kb on + strand at 19.502 kb on + strand at 19.503 kb on - strand at 19.503 kb on - strand at 19.503 kb on - strand at 19.566 kb on + strand at 19.566 kb on + strand at 19.566 kb on + strand at 19.566 kb on + strand at 19.567 kb on - strand at 19.701 kb on + strand at 19.702 kb on - strand at 20.022 kb on + strand, within GFF6773 at 20.061 kb on + strand, within GFF6773 at 20.061 kb on + strand, within GFF6773 at 20.269 kb on + strand, within GFF6773 at 20.269 kb on + strand, within GFF6773 at 20.270 kb on - strand, within GFF6773 at 20.270 kb on - strand, within GFF6773 at 20.270 kb on - strand, within GFF6773 at 20.270 kb on - strand, within GFF6773 at 20.380 kb on - strand at 20.380 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 17,056 + GFF6771 0.24 -0.3 17,056 + GFF6771 0.24 -2.4 17,056 + GFF6771 0.24 +0.4 17,056 + GFF6771 0.24 +0.3 17,057 - GFF6771 0.24 -1.0 17,057 - GFF6771 0.24 +0.8 17,057 - GFF6771 0.24 -0.4 17,057 - GFF6771 0.24 -0.8 17,057 - GFF6771 0.24 -1.0 17,057 - GFF6771 0.24 -1.4 17,239 + GFF6771 0.44 -1.7 17,239 + GFF6771 0.44 -1.0 17,239 + GFF6771 0.44 -1.8 17,240 - GFF6771 0.44 +0.3 17,240 - GFF6771 0.44 -1.0 17,257 + GFF6771 0.46 +0.2 17,257 + GFF6771 0.46 -0.4 17,257 + GFF6771 0.46 -0.8 17,257 + GFF6771 0.46 -1.9 17,258 - GFF6771 0.46 -0.6 17,258 - GFF6771 0.46 -0.9 17,258 - GFF6771 0.46 +0.4 17,258 - GFF6771 0.46 +0.7 17,736 + -1.2 17,752 + -2.7 17,752 + -2.6 17,752 + -0.3 17,752 + -0.5 17,753 - +2.1 17,753 - -1.8 17,753 - -2.5 17,753 - -2.6 17,842 + -3.0 17,842 + -3.2 17,843 - -2.2 17,855 - -1.2 18,040 + GFF6772 0.17 -3.0 18,041 - GFF6772 0.17 -2.0 18,400 + GFF6772 0.37 -3.8 18,400 + GFF6772 0.37 -1.0 18,512 - GFF6772 0.44 -0.5 18,532 + GFF6772 0.45 -0.7 18,532 + GFF6772 0.45 -4.2 18,533 - GFF6772 0.45 -2.7 18,533 - GFF6772 0.45 -1.2 19,184 - GFF6772 0.82 -0.8 19,261 + GFF6772 0.87 -0.5 19,405 + +1.8 19,405 + -2.0 19,406 - +1.6 19,406 - -0.3 19,406 - +0.2 19,502 + +0.1 19,502 + -1.0 19,503 - +0.5 19,503 - -3.2 19,503 - -3.2 19,566 + -1.4 19,566 + -0.9 19,566 + -1.5 19,566 + +1.0 19,567 - -1.9 19,701 + +0.6 19,702 - +0.3 20,022 + GFF6773 0.52 -0.1 20,061 + GFF6773 0.57 -1.0 20,061 + GFF6773 0.57 +0.9 20,269 + GFF6773 0.85 -2.4 20,269 + GFF6773 0.85 -1.9 20,270 - GFF6773 0.85 -0.3 20,270 - GFF6773 0.85 -2.7 20,270 - GFF6773 0.85 -1.1 20,270 - GFF6773 0.85 -1.9 20,380 - -0.8 20,380 - -0.3
Or see this region's nucleotide sequence