Strain Fitness in Variovorax sp. SCN45 around GFF6770

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
15,259	+				-0.9
15,332	+				-0.7
15,332	+				+1.5
15,333	-				+0.2
15,333	-				+0.9
15,333	-				-2.7
15,363	+				+0.5
15,363	+				-2.9
15,363	+				-1.6
15,363	+				-0.2
15,363	+				-1.4
15,364	-				+0.2
15,364	-				-1.4
15,377	+				-1.7
15,377	+				-2.2
15,378	-				+0.0
15,378	-				+0.6
15,594	+		GFF6769	0.23	+1.3
15,594	+		GFF6769	0.23	+0.1
15,595	-		GFF6769	0.23	-0.3
15,595	-		GFF6769	0.23	-0.5
15,595	-		GFF6769	0.23	-1.4
15,595	-		GFF6769	0.23	-1.5
15,597	+		GFF6769	0.24	+2.2
15,597	+		GFF6769	0.24	-1.2
15,598	-		GFF6769	0.24	-1.9
15,609	+		GFF6769	0.25	-0.1
15,609	+		GFF6769	0.25	+0.6
15,609	+		GFF6769	0.25	-0.0
15,610	-		GFF6769	0.25	-1.1
15,732	+		GFF6769	0.42	+0.6
15,732	+		GFF6769	0.42	-1.5
15,732	+		GFF6769	0.42	+0.8
15,733	-		GFF6769	0.42	-2.6
15,762	+		GFF6769	0.46	-1.0
15,762	+		GFF6769	0.46	+1.1
15,762	+		GFF6769	0.46	-1.4
15,763	-		GFF6769	0.46	+0.6
15,763	-		GFF6769	0.46	-4.0
16,011	+		GFF6769	0.80	-2.3
16,012	-		GFF6769	0.80	+0.6
16,012	-		GFF6769	0.80	+1.2
16,280	+		GFF6770	0.13	-4.0
16,280	+		GFF6770	0.13	-2.5
16,280	+		GFF6770	0.13	+0.2
16,280	+		GFF6770	0.13	-2.7
16,280	+		GFF6770	0.13	-1.8
16,280	+		GFF6770	0.13	-1.0
16,281	-		GFF6770	0.13	-1.1
16,553	+		GFF6770	0.55	+0.2
16,553	+		GFF6770	0.55	-1.0
16,554	-		GFF6770	0.55	-1.5
16,554	-		GFF6770	0.55	-2.4
16,554	-		GFF6770	0.55	-2.3
16,702	+		GFF6770	0.78	-4.4
16,703	-		GFF6770	0.78	-5.4
16,703	-		GFF6770	0.78	+0.2
17,056	+		GFF6771	0.24	-0.3
17,056	+		GFF6771	0.24	-2.4
17,056	+		GFF6771	0.24	+0.4
17,056	+		GFF6771	0.24	+0.3
17,057	-		GFF6771	0.24	-1.0
17,057	-		GFF6771	0.24	+0.8
17,057	-		GFF6771	0.24	-0.4
17,057	-		GFF6771	0.24	-0.8
17,057	-		GFF6771	0.24	-1.0
17,057	-		GFF6771	0.24	-1.4
17,239	+		GFF6771	0.44	-1.7
17,239	+		GFF6771	0.44	-1.0
17,239	+		GFF6771	0.44	-1.8
17,240	-		GFF6771	0.44	+0.3
17,240	-		GFF6771	0.44	-1.0
17,257	+		GFF6771	0.46	+0.2
17,257	+		GFF6771	0.46	-0.4
17,257	+		GFF6771	0.46	-0.8
17,257	+		GFF6771	0.46	-1.9
17,258	-		GFF6771	0.46	-0.6
17,258	-		GFF6771	0.46	-0.9
17,258	-		GFF6771	0.46	+0.4
17,258	-		GFF6771	0.46	+0.7
17,736	+				-1.2
17,752	+				-2.7
17,752	+				-2.6
17,752	+				-0.3
17,752	+				-0.5
17,753	-				+2.1
17,753	-				-1.8
17,753	-				-2.5
17,753	-				-2.6
17,842	+				-3.0
17,842	+				-3.2