Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6726 and GFF6727 overlap by 1 nucleotides GFF6727 and GFF6728 are separated by 18 nucleotides GFF6728 and GFF6729 are separated by 33 nucleotides GFF6729 and GFF6730 overlap by 4 nucleotides
GFF6726 - hypothetical protein, at 36,305 to 37,909
GFF6726
GFF6727 - no description, at 37,909 to 38,538
GFF6727
GFF6728 - Probable VANILLIN dehydrogenase oxidoreductase protein (EC 1.-.-.-), at 38,557 to 40,008
GFF6728
GFF6729 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 40,042 to 40,755
GFF6729
GFF6730 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 40,752 to 41,504
GFF6730
Position (kb) 38
39
40
41 Strain fitness (log2 ratio) -2
-1
0
1
2 at 37.613 kb on + strand, within GFF6726 at 37.614 kb on - strand, within GFF6726 at 37.614 kb on - strand, within GFF6726 at 37.614 kb on - strand, within GFF6726 at 38.056 kb on + strand, within GFF6727 at 38.057 kb on - strand, within GFF6727 at 38.057 kb on - strand, within GFF6727 at 38.305 kb on + strand, within GFF6727 at 38.330 kb on - strand, within GFF6727 at 38.330 kb on - strand, within GFF6727 at 38.330 kb on - strand, within GFF6727 at 38.883 kb on - strand, within GFF6728 at 39.278 kb on + strand, within GFF6728 at 39.580 kb on + strand, within GFF6728 at 39.580 kb on + strand, within GFF6728 at 39.583 kb on + strand, within GFF6728 at 39.584 kb on - strand, within GFF6728 at 40.136 kb on + strand, within GFF6729 at 40.709 kb on + strand at 40.876 kb on + strand, within GFF6730 at 40.876 kb on + strand, within GFF6730 at 40.877 kb on - strand, within GFF6730 at 40.877 kb on - strand, within GFF6730
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 37,613 + GFF6726 0.81 -0.0 37,614 - GFF6726 0.82 -1.1 37,614 - GFF6726 0.82 -2.1 37,614 - GFF6726 0.82 -0.7 38,056 + GFF6727 0.23 +0.5 38,057 - GFF6727 0.23 +2.2 38,057 - GFF6727 0.23 -1.4 38,305 + GFF6727 0.63 +0.9 38,330 - GFF6727 0.67 -1.3 38,330 - GFF6727 0.67 +0.3 38,330 - GFF6727 0.67 +0.7 38,883 - GFF6728 0.22 -1.5 39,278 + GFF6728 0.50 -0.4 39,580 + GFF6728 0.70 -1.0 39,580 + GFF6728 0.70 -0.1 39,583 + GFF6728 0.71 -2.0 39,584 - GFF6728 0.71 -2.5 40,136 + GFF6729 0.13 -0.8 40,709 + -0.1 40,876 + GFF6730 0.16 -1.1 40,876 + GFF6730 0.16 +0.8 40,877 - GFF6730 0.17 +2.0 40,877 - GFF6730 0.17 -0.4
Or see this region's nucleotide sequence