Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6676 and GFF6677 are separated by 151 nucleotides GFF6677 and GFF6678 are separated by 175 nucleotides
GFF6676 - Ammonium transporter, at 50,717 to 51,919
GFF6676
GFF6677 - regulatory protein, at 52,071 to 52,982
GFF6677
GFF6678 - Putative inner membrane protein, at 53,158 to 54,381
GFF6678
Position (kb) 52
53 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 51.147 kb on + strand, within GFF6676 at 51.147 kb on + strand, within GFF6676 at 51.147 kb on + strand, within GFF6676 at 51.147 kb on + strand, within GFF6676 at 51.148 kb on - strand, within GFF6676 at 51.148 kb on - strand, within GFF6676 at 51.528 kb on + strand, within GFF6676 at 51.529 kb on - strand, within GFF6676 at 51.529 kb on - strand, within GFF6676 at 51.529 kb on - strand, within GFF6676 at 51.529 kb on - strand, within GFF6676 at 51.529 kb on - strand, within GFF6676 at 51.529 kb on - strand, within GFF6676 at 51.529 kb on - strand, within GFF6676 at 51.529 kb on - strand, within GFF6676 at 51.537 kb on + strand, within GFF6676 at 51.670 kb on - strand, within GFF6676 at 51.720 kb on + strand, within GFF6676 at 51.720 kb on + strand, within GFF6676 at 51.720 kb on + strand, within GFF6676 at 51.732 kb on + strand, within GFF6676 at 51.733 kb on - strand, within GFF6676 at 51.733 kb on - strand, within GFF6676 at 51.747 kb on + strand, within GFF6676 at 51.748 kb on - strand, within GFF6676 at 51.748 kb on - strand, within GFF6676 at 51.748 kb on - strand, within GFF6676 at 51.748 kb on - strand, within GFF6676 at 51.907 kb on + strand at 51.907 kb on + strand at 51.907 kb on + strand at 51.907 kb on + strand at 51.907 kb on + strand at 51.907 kb on + strand at 51.907 kb on + strand at 51.908 kb on - strand at 51.908 kb on - strand at 51.908 kb on - strand at 51.908 kb on - strand at 51.908 kb on - strand at 51.908 kb on - strand at 51.908 kb on - strand at 51.985 kb on + strand at 51.986 kb on - strand at 51.986 kb on - strand at 51.986 kb on - strand at 51.986 kb on - strand at 52.038 kb on + strand at 52.039 kb on - strand at 52.173 kb on + strand, within GFF6677 at 52.173 kb on + strand, within GFF6677 at 52.173 kb on + strand, within GFF6677 at 52.173 kb on + strand, within GFF6677 at 52.174 kb on - strand, within GFF6677 at 52.174 kb on - strand, within GFF6677 at 52.174 kb on - strand, within GFF6677 at 52.174 kb on - strand, within GFF6677 at 52.279 kb on + strand, within GFF6677 at 52.279 kb on + strand, within GFF6677 at 52.279 kb on + strand, within GFF6677 at 52.279 kb on + strand, within GFF6677 at 52.279 kb on + strand, within GFF6677 at 52.279 kb on + strand, within GFF6677 at 52.279 kb on + strand, within GFF6677 at 52.280 kb on - strand, within GFF6677 at 52.280 kb on - strand, within GFF6677 at 52.280 kb on - strand, within GFF6677 at 52.309 kb on + strand, within GFF6677 at 52.309 kb on + strand, within GFF6677 at 52.309 kb on + strand, within GFF6677 at 52.309 kb on + strand, within GFF6677 at 52.309 kb on + strand, within GFF6677 at 52.309 kb on + strand, within GFF6677 at 52.309 kb on + strand, within GFF6677 at 52.309 kb on + strand, within GFF6677 at 52.309 kb on + strand, within GFF6677 at 52.309 kb on + strand, within GFF6677 at 52.309 kb on + strand, within GFF6677 at 52.310 kb on - strand, within GFF6677 at 52.310 kb on - strand, within GFF6677 at 52.310 kb on - strand, within GFF6677 at 52.310 kb on - strand, within GFF6677 at 52.310 kb on - strand, within GFF6677 at 52.310 kb on - strand, within GFF6677 at 52.519 kb on + strand, within GFF6677 at 52.520 kb on - strand, within GFF6677 at 52.549 kb on + strand, within GFF6677 at 52.549 kb on + strand, within GFF6677 at 52.550 kb on - strand, within GFF6677 at 52.550 kb on - strand, within GFF6677 at 52.550 kb on - strand, within GFF6677 at 52.570 kb on + strand, within GFF6677 at 52.570 kb on + strand, within GFF6677 at 52.570 kb on + strand, within GFF6677 at 52.571 kb on - strand, within GFF6677 at 52.571 kb on - strand, within GFF6677 at 52.571 kb on - strand, within GFF6677 at 52.571 kb on - strand, within GFF6677 at 52.576 kb on + strand, within GFF6677 at 52.577 kb on - strand, within GFF6677 at 52.577 kb on - strand, within GFF6677 at 52.609 kb on + strand, within GFF6677 at 52.630 kb on + strand, within GFF6677 at 52.630 kb on + strand, within GFF6677 at 52.630 kb on + strand, within GFF6677 at 52.630 kb on + strand, within GFF6677 at 52.630 kb on + strand, within GFF6677 at 52.630 kb on + strand, within GFF6677 at 52.630 kb on + strand, within GFF6677 at 52.631 kb on - strand, within GFF6677 at 52.631 kb on - strand, within GFF6677 at 52.631 kb on - strand, within GFF6677 at 52.631 kb on - strand, within GFF6677 at 52.930 kb on + strand at 52.931 kb on - strand at 52.948 kb on + strand at 52.948 kb on + strand at 52.949 kb on - strand at 52.949 kb on - strand at 52.949 kb on - strand at 52.949 kb on - strand at 52.949 kb on - strand at 52.957 kb on + strand at 52.957 kb on + strand at 52.957 kb on + strand at 52.957 kb on + strand at 52.957 kb on + strand at 52.957 kb on + strand at 52.957 kb on + strand at 52.957 kb on + strand at 52.958 kb on - strand at 52.958 kb on - strand at 53.245 kb on + strand at 53.245 kb on + strand at 53.245 kb on + strand at 53.246 kb on - strand at 53.246 kb on - strand at 53.246 kb on - strand at 53.246 kb on - strand at 53.246 kb on - strand at 53.246 kb on - strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.260 kb on + strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.261 kb on - strand at 53.263 kb on + strand at 53.263 kb on + strand at 53.263 kb on + strand at 53.263 kb on + strand at 53.263 kb on + strand at 53.263 kb on + strand at 53.263 kb on + strand at 53.263 kb on + strand at 53.263 kb on + strand at 53.263 kb on + strand at 53.263 kb on + strand at 53.263 kb on + strand at 53.264 kb on - strand at 53.264 kb on - strand at 53.264 kb on - strand at 53.264 kb on - strand at 53.264 kb on - strand at 53.264 kb on - strand at 53.264 kb on - strand at 53.264 kb on - strand at 53.369 kb on + strand, within GFF6678 at 53.370 kb on - strand, within GFF6678 at 53.494 kb on + strand, within GFF6678 at 53.494 kb on + strand, within GFF6678 at 53.494 kb on + strand, within GFF6678 at 53.494 kb on + strand, within GFF6678 at 53.494 kb on + strand, within GFF6678 at 53.494 kb on + strand, within GFF6678 at 53.494 kb on + strand, within GFF6678 at 53.494 kb on + strand, within GFF6678 at 53.495 kb on - strand, within GFF6678 at 53.495 kb on - strand, within GFF6678 at 53.495 kb on - strand, within GFF6678 at 53.495 kb on - strand, within GFF6678 at 53.555 kb on - strand, within GFF6678 at 53.555 kb on - strand, within GFF6678 at 53.632 kb on + strand, within GFF6678 at 53.632 kb on + strand, within GFF6678 at 53.632 kb on + strand, within GFF6678 at 53.632 kb on + strand, within GFF6678 at 53.633 kb on - strand, within GFF6678 at 53.633 kb on - strand, within GFF6678 at 53.633 kb on - strand, within GFF6678 at 53.633 kb on - strand, within GFF6678 at 53.641 kb on + strand, within GFF6678 at 53.642 kb on - strand, within GFF6678 at 53.642 kb on - strand, within GFF6678 at 53.653 kb on + strand, within GFF6678 at 53.653 kb on + strand, within GFF6678 at 53.851 kb on + strand, within GFF6678 at 53.852 kb on - strand, within GFF6678 at 53.852 kb on - strand, within GFF6678 at 53.852 kb on - strand, within GFF6678 at 53.852 kb on - strand, within GFF6678 at 53.852 kb on - strand, within GFF6678 at 53.852 kb on - strand, within GFF6678 at 53.869 kb on + strand, within GFF6678 at 53.869 kb on + strand, within GFF6678 at 53.869 kb on + strand, within GFF6678 at 53.869 kb on + strand, within GFF6678 at 53.869 kb on + strand, within GFF6678 at 53.869 kb on + strand, within GFF6678 at 53.870 kb on - strand, within GFF6678 at 53.870 kb on - strand, within GFF6678 at 53.870 kb on - strand, within GFF6678 at 53.875 kb on + strand, within GFF6678 at 53.875 kb on + strand, within GFF6678 at 53.876 kb on - strand, within GFF6678
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 51,147 + GFF6676 0.36 +1.4 51,147 + GFF6676 0.36 -0.6 51,147 + GFF6676 0.36 -0.7 51,147 + GFF6676 0.36 -0.4 51,148 - GFF6676 0.36 -3.4 51,148 - GFF6676 0.36 -0.7 51,528 + GFF6676 0.67 -1.9 51,529 - GFF6676 0.67 -1.2 51,529 - GFF6676 0.67 -2.7 51,529 - GFF6676 0.67 -2.5 51,529 - GFF6676 0.67 -0.1 51,529 - GFF6676 0.67 -1.8 51,529 - GFF6676 0.67 -0.3 51,529 - GFF6676 0.67 -2.1 51,529 - GFF6676 0.67 -0.9 51,537 + GFF6676 0.68 -2.9 51,670 - GFF6676 0.79 +2.3 51,720 + GFF6676 0.83 +1.6 51,720 + GFF6676 0.83 -0.8 51,720 + GFF6676 0.83 +1.3 51,732 + GFF6676 0.84 -0.1 51,733 - GFF6676 0.84 -0.4 51,733 - GFF6676 0.84 -0.4 51,747 + GFF6676 0.86 +0.3 51,748 - GFF6676 0.86 +0.4 51,748 - GFF6676 0.86 -2.0 51,748 - GFF6676 0.86 -1.3 51,748 - GFF6676 0.86 -1.0 51,907 + -0.7 51,907 + +0.8 51,907 + +0.6 51,907 + +0.1 51,907 + +0.6 51,907 + -3.2 51,907 + -0.4 51,908 - +0.4 51,908 - -2.3 51,908 - -1.9 51,908 - -1.9 51,908 - -0.2 51,908 - -2.6 51,908 - -2.6 51,985 + +0.2 51,986 - -0.9 51,986 - +0.1 51,986 - -0.9 51,986 - -0.7 52,038 + -2.5 52,039 - +1.5 52,173 + GFF6677 0.11 -2.3 52,173 + GFF6677 0.11 -1.4 52,173 + GFF6677 0.11 -0.1 52,173 + GFF6677 0.11 -0.9 52,174 - GFF6677 0.11 -0.7 52,174 - GFF6677 0.11 -2.2 52,174 - GFF6677 0.11 +0.2 52,174 - GFF6677 0.11 -1.6 52,279 + GFF6677 0.23 -1.3 52,279 + GFF6677 0.23 +0.4 52,279 + GFF6677 0.23 +1.0 52,279 + GFF6677 0.23 -0.9 52,279 + GFF6677 0.23 +0.1 52,279 + GFF6677 0.23 -1.7 52,279 + GFF6677 0.23 +0.2 52,280 - GFF6677 0.23 +1.0 52,280 - GFF6677 0.23 -3.1 52,280 - GFF6677 0.23 -3.2 52,309 + GFF6677 0.26 -0.4 52,309 + GFF6677 0.26 -1.5 52,309 + GFF6677 0.26 +0.6 52,309 + GFF6677 0.26 -0.4 52,309 + GFF6677 0.26 -1.1 52,309 + GFF6677 0.26 +0.4 52,309 + GFF6677 0.26 +0.1 52,309 + GFF6677 0.26 -2.9 52,309 + GFF6677 0.26 -0.1 52,309 + GFF6677 0.26 -2.1 52,309 + GFF6677 0.26 -3.8 52,310 - GFF6677 0.26 -0.1 52,310 - GFF6677 0.26 -1.0 52,310 - GFF6677 0.26 -3.4 52,310 - GFF6677 0.26 -2.5 52,310 - GFF6677 0.26 -0.0 52,310 - GFF6677 0.26 -3.0 52,519 + GFF6677 0.49 -4.3 52,520 - GFF6677 0.49 +0.6 52,549 + GFF6677 0.52 +1.3 52,549 + GFF6677 0.52 -1.3 52,550 - GFF6677 0.53 -1.4 52,550 - GFF6677 0.53 -0.3 52,550 - GFF6677 0.53 -0.6 52,570 + GFF6677 0.55 -3.3 52,570 + GFF6677 0.55 +1.9 52,570 + GFF6677 0.55 +0.1 52,571 - GFF6677 0.55 -1.4 52,571 - GFF6677 0.55 -1.4 52,571 - GFF6677 0.55 -0.1 52,571 - GFF6677 0.55 -2.1 52,576 + GFF6677 0.55 -1.9 52,577 - GFF6677 0.55 -0.8 52,577 - GFF6677 0.55 -0.4 52,609 + GFF6677 0.59 -0.7 52,630 + GFF6677 0.61 -0.7 52,630 + GFF6677 0.61 -0.9 52,630 + GFF6677 0.61 +0.6 52,630 + GFF6677 0.61 -2.7 52,630 + GFF6677 0.61 -1.9 52,630 + GFF6677 0.61 +1.3 52,630 + GFF6677 0.61 -1.9 52,631 - GFF6677 0.61 -1.7 52,631 - GFF6677 0.61 -0.1 52,631 - GFF6677 0.61 -1.2 52,631 - GFF6677 0.61 -0.1 52,930 + +1.2 52,931 - -2.4 52,948 + -2.3 52,948 + -1.5 52,949 - -0.7 52,949 - +0.5 52,949 - +2.2 52,949 - +2.0 52,949 - +0.4 52,957 + -0.1 52,957 + -3.2 52,957 + +0.5 52,957 + +0.6 52,957 + -0.9 52,957 + -0.0 52,957 + -2.5 52,957 + -0.0 52,958 - -2.0 52,958 - -0.4 53,245 + +0.8 53,245 + -2.4 53,245 + -3.6 53,246 - -0.4 53,246 - +0.2 53,246 - -0.4 53,246 - -4.6 53,246 - -1.9 53,246 - -0.2 53,260 + -2.3 53,260 + +0.3 53,260 + -0.4 53,260 + -1.5 53,260 + -2.4 53,260 + +1.0 53,260 + -4.4 53,260 + -2.8 53,260 + -0.3 53,260 + +0.1 53,260 + -0.5 53,260 + -0.2 53,260 + +0.6 53,260 + -1.4 53,260 + -2.1 53,260 + +2.9 53,260 + -1.3 53,260 + +0.2 53,260 + -1.5 53,260 + -1.8 53,260 + -2.9 53,260 + -0.5 53,260 + -2.8 53,260 + +0.1 53,261 - -0.8 53,261 - -2.1 53,261 - -1.5 53,261 - +0.1 53,261 - -2.4 53,261 - -2.5 53,261 - -0.4 53,261 - -1.7 53,261 - +1.0 53,261 - -1.9 53,261 - -0.9 53,261 - -0.4 53,261 - -1.4 53,261 - -0.5 53,261 - +0.8 53,263 + -1.2 53,263 + +0.2 53,263 + -2.5 53,263 + +0.6 53,263 + -3.1 53,263 + -1.8 53,263 + +0.2 53,263 + -0.3 53,263 + -0.2 53,263 + -0.6 53,263 + -1.7 53,263 + -0.3 53,264 - -1.5 53,264 - +0.2 53,264 - -2.6 53,264 - +0.1 53,264 - -0.9 53,264 - -1.8 53,264 - -0.4 53,264 - +1.2 53,369 + GFF6678 0.17 -3.1 53,370 - GFF6678 0.17 -3.4 53,494 + GFF6678 0.27 -1.1 53,494 + GFF6678 0.27 -0.9 53,494 + GFF6678 0.27 -0.8 53,494 + GFF6678 0.27 -0.4 53,494 + GFF6678 0.27 -0.9 53,494 + GFF6678 0.27 -1.9 53,494 + GFF6678 0.27 -0.9 53,494 + GFF6678 0.27 -1.2 53,495 - GFF6678 0.28 -0.4 53,495 - GFF6678 0.28 -0.9 53,495 - GFF6678 0.28 +0.9 53,495 - GFF6678 0.28 -1.5 53,555 - GFF6678 0.32 +3.5 53,555 - GFF6678 0.32 -3.8 53,632 + GFF6678 0.39 -2.1 53,632 + GFF6678 0.39 -3.2 53,632 + GFF6678 0.39 -0.5 53,632 + GFF6678 0.39 +2.4 53,633 - GFF6678 0.39 -2.6 53,633 - GFF6678 0.39 +1.1 53,633 - GFF6678 0.39 +0.5 53,633 - GFF6678 0.39 -1.2 53,641 + GFF6678 0.39 +0.3 53,642 - GFF6678 0.40 +0.3 53,642 - GFF6678 0.40 +3.8 53,653 + GFF6678 0.40 -1.2 53,653 + GFF6678 0.40 -1.5 53,851 + GFF6678 0.57 -1.0 53,852 - GFF6678 0.57 -0.7 53,852 - GFF6678 0.57 +1.0 53,852 - GFF6678 0.57 +0.5 53,852 - GFF6678 0.57 -3.0 53,852 - GFF6678 0.57 -0.9 53,852 - GFF6678 0.57 +1.2 53,869 + GFF6678 0.58 +0.5 53,869 + GFF6678 0.58 -0.7 53,869 + GFF6678 0.58 -0.7 53,869 + GFF6678 0.58 -3.3 53,869 + GFF6678 0.58 -0.6 53,869 + GFF6678 0.58 -3.4 53,870 - GFF6678 0.58 +0.4 53,870 - GFF6678 0.58 -2.2 53,870 - GFF6678 0.58 +0.3 53,875 + GFF6678 0.59 -1.6 53,875 + GFF6678 0.59 +0.3 53,876 - GFF6678 0.59 +1.2
Or see this region's nucleotide sequence