Strain Fitness in Variovorax sp. SCN45 around GFF6627

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
72,984	+		GFF6626	0.72	+0.9
73,059	+		GFF6626	0.77	+1.1
73,060	-		GFF6626	0.77	-2.0
73,124	+		GFF6626	0.81	+1.3
73,124	+		GFF6626	0.81	-0.2
73,242	+		GFF6626	0.89	-1.2
73,320	+				+1.1
73,320	+				+0.1
73,321	-				+1.2
73,352	+				-1.5
73,352	+				+0.5
73,353	-				-1.4
73,353	-				-0.3
73,354	+				+1.2
73,354	+				-3.1
73,354	+				+0.7
73,355	-				-0.4
73,576	-				-1.3
73,576	-				-0.9
73,628	+				+0.1
73,628	+				+0.2
73,628	+				+0.1
73,629	-				+0.8
73,629	-				+1.4
73,641	+				+0.7
73,641	+				-0.5
73,641	+				-1.3
73,641	+				-1.7
73,642	-				-2.8
73,642	-				-1.7
73,642	-				+0.8
73,642	-				+0.6
73,642	-				-0.5
73,642	-				-1.2
73,736	+				-1.7
73,736	+				-0.7
73,737	-				-1.8
73,737	-				-0.2
73,737	-				-1.2
73,772	-				-0.8
73,854	+				-2.7
73,855	-				-2.6
73,855	-				+0.3
73,913	+				+0.1
73,913	+				+0.1
73,913	+				+0.9
73,914	-				-1.6
73,914	-				-0.5
73,914	-				-1.5
73,958	+				+0.7
74,109	+		GFF6627	0.48	-2.5
74,109	+		GFF6627	0.48	+1.8
74,109	+		GFF6627	0.48	-0.2
74,110	-		GFF6627	0.49	-1.2
74,110	-		GFF6627	0.49	+0.9
74,110	-		GFF6627	0.49	+0.4
74,110	-		GFF6627	0.49	+1.0
74,124	+		GFF6627	0.53	+1.8
74,125	-		GFF6627	0.54	+2.6
74,125	-		GFF6627	0.54	+2.2
74,503	+				-0.5
74,504	-				-0.0
74,504	-				-0.2
74,504	-				-2.8
74,561	+				+1.2
74,562	-				+0.5
74,565	+				-0.5
74,565	+				+1.1
74,565	+				+1.1
74,565	+				-0.8
74,565	+				-1.8
74,565	+				+0.5
74,566	-				-2.3
74,566	-				+0.5
74,566	-				-1.6
74,566	-				-3.0
74,566	-				-3.1
74,566	-				-3.2
74,627	+				-2.0
74,627	+				-1.5
74,627	+				+2.1
74,628	-				-0.3
74,628	-				-1.9
74,628	-				-0.8
74,645	-		GFF6629	0.20	-1.5
74,645	-		GFF6629	0.20	-1.2
74,767	+				-0.1
74,768	-				+0.2
74,773	+				+0.7
74,773	+				+0.8
74,986	-				-1.6