Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6602 and GFF6603 overlap by 4 nucleotides GFF6603 and GFF6604 overlap by 4 nucleotides GFF6604 and GFF6605 overlap by 4 nucleotides GFF6605 and GFF6606 overlap by 4 nucleotides
GFF6602 - Type IV secretory pathway, protease TraF, at 49,152 to 49,727
GFF6602
GFF6603 - Glycosidases, at 49,724 to 50,269
GFF6603
GFF6604 - FIG00457034: hypothetical protein, at 50,266 to 50,538
GFF6604
GFF6605 - ParA-like protein, at 50,535 to 51,173
GFF6605
GFF6606 - no description, at 51,170 to 51,397
GFF6606
Position (kb) 49
50
51 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 48.767 kb on - strand at 49.041 kb on - strand at 49.041 kb on - strand at 49.041 kb on - strand at 49.108 kb on + strand at 49.383 kb on + strand, within GFF6602 at 49.384 kb on - strand, within GFF6602 at 49.384 kb on - strand, within GFF6602 at 49.422 kb on - strand, within GFF6602 at 49.422 kb on - strand, within GFF6602 at 49.447 kb on + strand, within GFF6602 at 49.565 kb on - strand, within GFF6602 at 49.597 kb on + strand, within GFF6602 at 49.597 kb on + strand, within GFF6602 at 49.598 kb on - strand, within GFF6602 at 49.598 kb on - strand, within GFF6602 at 49.598 kb on - strand, within GFF6602 at 49.715 kb on + strand at 49.715 kb on + strand at 49.773 kb on + strand at 49.919 kb on + strand, within GFF6603 at 49.920 kb on - strand, within GFF6603 at 49.920 kb on - strand, within GFF6603 at 49.920 kb on - strand, within GFF6603 at 50.020 kb on - strand, within GFF6603 at 50.099 kb on + strand, within GFF6603 at 50.100 kb on - strand, within GFF6603 at 50.130 kb on + strand, within GFF6603 at 50.130 kb on + strand, within GFF6603 at 50.131 kb on - strand, within GFF6603 at 50.131 kb on - strand, within GFF6603 at 50.131 kb on - strand, within GFF6603 at 50.131 kb on - strand, within GFF6603 at 50.131 kb on - strand, within GFF6603 at 50.154 kb on + strand, within GFF6603 at 50.154 kb on + strand, within GFF6603 at 50.154 kb on + strand, within GFF6603 at 50.155 kb on - strand, within GFF6603 at 50.155 kb on - strand, within GFF6603 at 50.155 kb on - strand, within GFF6603 at 50.414 kb on + strand, within GFF6604 at 51.259 kb on + strand, within GFF6606 at 51.259 kb on + strand, within GFF6606 at 51.262 kb on + strand, within GFF6606 at 51.263 kb on - strand, within GFF6606 at 51.263 kb on - strand, within GFF6606 at 51.263 kb on - strand, within GFF6606 at 51.263 kb on - strand, within GFF6606 at 51.266 kb on + strand, within GFF6606 at 51.266 kb on + strand, within GFF6606 at 51.266 kb on + strand, within GFF6606 at 51.267 kb on - strand, within GFF6606 at 51.267 kb on - strand, within GFF6606 at 51.267 kb on - strand, within GFF6606 at 51.267 kb on - strand, within GFF6606 at 51.267 kb on - strand, within GFF6606 at 51.267 kb on - strand, within GFF6606
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 48,767 - -1.9 49,041 - +1.7 49,041 - +1.5 49,041 - -1.9 49,108 + -1.2 49,383 + GFF6602 0.40 -2.9 49,384 - GFF6602 0.40 +2.0 49,384 - GFF6602 0.40 -1.4 49,422 - GFF6602 0.47 +0.6 49,422 - GFF6602 0.47 +0.1 49,447 + GFF6602 0.51 +0.5 49,565 - GFF6602 0.72 +0.2 49,597 + GFF6602 0.77 +0.4 49,597 + GFF6602 0.77 +1.1 49,598 - GFF6602 0.77 -2.7 49,598 - GFF6602 0.77 -0.8 49,598 - GFF6602 0.77 +2.7 49,715 + +1.0 49,715 + +0.4 49,773 + +0.1 49,919 + GFF6603 0.36 -0.2 49,920 - GFF6603 0.36 -3.4 49,920 - GFF6603 0.36 +0.3 49,920 - GFF6603 0.36 -1.2 50,020 - GFF6603 0.54 -2.3 50,099 + GFF6603 0.69 +1.8 50,100 - GFF6603 0.69 -0.0 50,130 + GFF6603 0.74 +0.2 50,130 + GFF6603 0.74 -0.4 50,131 - GFF6603 0.75 +1.8 50,131 - GFF6603 0.75 -2.9 50,131 - GFF6603 0.75 -3.5 50,131 - GFF6603 0.75 -1.8 50,131 - GFF6603 0.75 -1.4 50,154 + GFF6603 0.79 -0.8 50,154 + GFF6603 0.79 +0.2 50,154 + GFF6603 0.79 -1.1 50,155 - GFF6603 0.79 -2.0 50,155 - GFF6603 0.79 -2.9 50,155 - GFF6603 0.79 -1.8 50,414 + GFF6604 0.54 +0.0 51,259 + GFF6606 0.39 -0.5 51,259 + GFF6606 0.39 +1.0 51,262 + GFF6606 0.40 -1.0 51,263 - GFF6606 0.41 -1.2 51,263 - GFF6606 0.41 -1.9 51,263 - GFF6606 0.41 -3.0 51,263 - GFF6606 0.41 +0.0 51,266 + GFF6606 0.42 -0.7 51,266 + GFF6606 0.42 +1.0 51,266 + GFF6606 0.42 -2.9 51,267 - GFF6606 0.43 -1.0 51,267 - GFF6606 0.43 -0.5 51,267 - GFF6606 0.43 +0.2 51,267 - GFF6606 0.43 -4.1 51,267 - GFF6606 0.43 -0.8 51,267 - GFF6606 0.43 -0.7
Or see this region's nucleotide sequence