Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6584 and GFF6585 are separated by 19 nucleotides GFF6585 and GFF6586 overlap by 4 nucleotides GFF6586 and GFF6587 are separated by 30 nucleotides
GFF6584 - Pyruvate kinase (EC 2.7.1.40), at 25,401 to 26,834
GFF6584
GFF6585 - D-glycerate 2-kinase (EC 2.7.1.165), at 26,854 to 28,179
GFF6585
GFF6586 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 28,176 to 29,084
GFF6586
GFF6587 - Hydroxypyruvate isomerase (EC 5.3.1.22), at 29,115 to 29,894
GFF6587
Position (kb) 26
27
28
29 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 25.873 kb on + strand, within GFF6584 at 25.873 kb on + strand, within GFF6584 at 25.924 kb on + strand, within GFF6584 at 25.925 kb on - strand, within GFF6584 at 25.925 kb on - strand, within GFF6584 at 25.925 kb on - strand, within GFF6584 at 26.699 kb on + strand at 26.826 kb on + strand at 26.827 kb on - strand at 26.838 kb on + strand at 26.838 kb on + strand at 26.838 kb on + strand at 26.838 kb on + strand at 26.838 kb on + strand at 26.838 kb on + strand at 26.838 kb on + strand at 26.838 kb on + strand at 26.838 kb on + strand at 26.838 kb on + strand at 26.838 kb on + strand at 26.838 kb on + strand at 26.838 kb on + strand at 26.839 kb on - strand at 26.839 kb on - strand at 26.839 kb on - strand at 26.839 kb on - strand at 26.839 kb on - strand at 26.839 kb on - strand at 26.839 kb on - strand at 26.839 kb on - strand at 26.839 kb on - strand at 26.839 kb on - strand at 27.210 kb on + strand, within GFF6585 at 27.519 kb on - strand, within GFF6585 at 27.849 kb on + strand, within GFF6585 at 27.951 kb on - strand, within GFF6585 at 27.967 kb on + strand, within GFF6585 at 27.968 kb on - strand, within GFF6585 at 27.968 kb on - strand, within GFF6585 at 27.996 kb on - strand, within GFF6585 at 28.069 kb on + strand at 28.641 kb on + strand, within GFF6586 at 28.642 kb on - strand, within GFF6586 at 28.723 kb on + strand, within GFF6586 at 28.723 kb on + strand, within GFF6586 at 28.979 kb on - strand, within GFF6586 at 28.979 kb on - strand, within GFF6586 at 29.086 kb on + strand at 29.086 kb on + strand at 29.086 kb on + strand at 29.086 kb on + strand at 29.087 kb on - strand at 29.087 kb on - strand at 29.087 kb on - strand at 29.087 kb on - strand at 29.087 kb on - strand at 29.116 kb on + strand at 29.117 kb on - strand at 29.173 kb on + strand at 29.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 25,873 + GFF6584 0.33 -0.5 25,873 + GFF6584 0.33 -2.0 25,924 + GFF6584 0.36 -0.4 25,925 - GFF6584 0.37 -0.2 25,925 - GFF6584 0.37 +0.7 25,925 - GFF6584 0.37 +0.2 26,699 + +1.6 26,826 + -0.3 26,827 - -0.7 26,838 + -0.6 26,838 + +0.8 26,838 + +2.3 26,838 + +3.2 26,838 + -0.5 26,838 + -1.2 26,838 + -1.0 26,838 + -2.3 26,838 + -2.0 26,838 + +1.2 26,838 + -0.2 26,838 + -1.4 26,838 + -2.8 26,839 - +0.8 26,839 - -2.6 26,839 - +2.1 26,839 - +0.5 26,839 - -0.2 26,839 - -2.5 26,839 - -2.9 26,839 - +0.6 26,839 - -1.2 26,839 - +0.8 27,210 + GFF6585 0.27 +1.8 27,519 - GFF6585 0.50 +4.3 27,849 + GFF6585 0.75 +0.5 27,951 - GFF6585 0.83 -1.2 27,967 + GFF6585 0.84 +2.1 27,968 - GFF6585 0.84 +0.8 27,968 - GFF6585 0.84 +0.7 27,996 - GFF6585 0.86 -0.3 28,069 + -1.5 28,641 + GFF6586 0.51 -0.5 28,642 - GFF6586 0.51 -1.0 28,723 + GFF6586 0.60 -0.5 28,723 + GFF6586 0.60 -0.9 28,979 - GFF6586 0.88 +0.1 28,979 - GFF6586 0.88 +0.5 29,086 + -0.2 29,086 + +1.2 29,086 + -0.3 29,086 + +0.4 29,087 - +0.5 29,087 - -2.9 29,087 - -1.2 29,087 - -0.5 29,087 - -2.8 29,116 + +2.8 29,117 - -1.6 29,173 + -0.4 29,174 - -0.2
Or see this region's nucleotide sequence