Strain Fitness in Variovorax sp. SCN45 around GFF6504

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6503 and GFF6504 overlap by 4 nucleotidesGFF6504 and GFF6505 are separated by 4 nucleotidesGFF6505 and GFF6506 are separated by 112 nucleotides GFF6503 - no description, at 105 to 368 GFF6503 GFF6504 - no description, at 365 to 1,111 GFF6504 GFF6505 - no description, at 1,116 to 1,529 GFF6505 GFF6506 - DNA-binding protein HU-beta, at 1,642 to 1,953 GFF6506 Position (kb) 0 1 2Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 0.071 kb on + strandat 0.071 kb on + strandat 0.094 kb on - strandat 0.111 kb on + strandat 0.191 kb on - strand, within GFF6503at 0.191 kb on - strand, within GFF6503at 0.191 kb on - strand, within GFF6503at 0.264 kb on + strand, within GFF6503at 0.264 kb on + strand, within GFF6503at 0.264 kb on + strand, within GFF6503at 0.265 kb on - strand, within GFF6503at 0.265 kb on - strand, within GFF6503at 0.265 kb on - strand, within GFF6503at 0.333 kb on + strand, within GFF6503at 0.333 kb on + strand, within GFF6503at 0.333 kb on + strand, within GFF6503at 0.334 kb on - strand, within GFF6503at 0.334 kb on - strand, within GFF6503at 0.334 kb on - strand, within GFF6503at 0.366 kb on + strandat 0.366 kb on + strandat 0.367 kb on - strandat 0.367 kb on - strandat 0.555 kb on + strand, within GFF6504at 0.556 kb on - strand, within GFF6504at 0.556 kb on - strand, within GFF6504at 0.556 kb on - strand, within GFF6504at 0.657 kb on + strand, within GFF6504at 0.657 kb on + strand, within GFF6504at 0.657 kb on + strand, within GFF6504at 0.658 kb on - strand, within GFF6504at 0.658 kb on - strand, within GFF6504at 0.779 kb on - strand, within GFF6504at 0.795 kb on + strand, within GFF6504at 0.795 kb on + strand, within GFF6504at 0.796 kb on - strand, within GFF6504at 0.796 kb on - strand, within GFF6504at 0.796 kb on - strand, within GFF6504at 0.796 kb on - strand, within GFF6504at 0.796 kb on - strand, within GFF6504at 0.932 kb on + strand, within GFF6504at 0.933 kb on - strand, within GFF6504at 0.987 kb on - strand, within GFF6504at 0.987 kb on - strand, within GFF6504at 0.988 kb on + strand, within GFF6504at 0.988 kb on + strand, within GFF6504at 0.988 kb on + strand, within GFF6504at 0.988 kb on + strand, within GFF6504at 0.988 kb on + strand, within GFF6504at 0.988 kb on + strand, within GFF6504at 0.988 kb on + strand, within GFF6504at 0.989 kb on - strand, within GFF6504at 0.989 kb on - strand, within GFF6504at 0.989 kb on - strand, within GFF6504at 0.989 kb on - strand, within GFF6504at 0.989 kb on - strand, within GFF6504at 0.989 kb on - strand, within GFF6504at 0.994 kb on - strand, within GFF6504at 1.045 kb on + strandat 1.046 kb on - strandat 1.099 kb on + strandat 1.339 kb on - strand, within GFF6505at 1.339 kb on - strand, within GFF6505at 1.582 kb on - strandat 1.596 kb on - strandat 1.613 kb on + strandat 1.643 kb on + strandat 1.644 kb on - strandat 1.644 kb on - strandat 1.644 kb on - strandat 1.906 kb on + strand, within GFF6506at 1.906 kb on + strand, within GFF6506at 1.906 kb on + strand, within GFF6506at 1.906 kb on + strand, within GFF6506at 1.907 kb on - strand, within GFF6506at 1.907 kb on - strand, within GFF6506at 1.972 kb on + strandat 1.973 kb on - strandat 1.990 kb on + strandat 2.003 kb on + strandat 2.003 kb on + strandat 2.004 kb on - strandat 2.004 kb on - strandat 2.004 kb on - strandat 2.105 kb on + strandat 2.105 kb on + strandat 2.106 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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71 + -0.2
71 + +1.7
94 - +0.3
111 + -1.9
191 - GFF6503 0.33 -1.7
191 - GFF6503 0.33 -3.0
191 - GFF6503 0.33 -1.1
264 + GFF6503 0.60 +0.4
264 + GFF6503 0.60 -1.1
264 + GFF6503 0.60 +0.7
265 - GFF6503 0.61 -2.7
265 - GFF6503 0.61 +0.3
265 - GFF6503 0.61 -2.7
333 + GFF6503 0.86 -0.2
333 + GFF6503 0.86 +0.6
333 + GFF6503 0.86 -1.9
334 - GFF6503 0.87 -1.6
334 - GFF6503 0.87 +0.1
334 - GFF6503 0.87 +1.3
366 + +2.4
366 + -0.2
367 - -0.0
367 - -2.0
555 + GFF6504 0.25 -2.1
556 - GFF6504 0.26 -0.3
556 - GFF6504 0.26 +0.3
556 - GFF6504 0.26 +0.4
657 + GFF6504 0.39 -1.9
657 + GFF6504 0.39 -2.6
657 + GFF6504 0.39 +1.5
658 - GFF6504 0.39 -2.5
658 - GFF6504 0.39 -3.6
779 - GFF6504 0.55 -3.6
795 + GFF6504 0.58 -3.4
795 + GFF6504 0.58 -2.1
796 - GFF6504 0.58 +0.6
796 - GFF6504 0.58 -3.1
796 - GFF6504 0.58 -1.0
796 - GFF6504 0.58 +0.5
796 - GFF6504 0.58 +0.1
932 + GFF6504 0.76 +1.9
933 - GFF6504 0.76 +1.7
987 - GFF6504 0.83 -1.0
987 - GFF6504 0.83 +0.2
988 + GFF6504 0.83 +1.8
988 + GFF6504 0.83 -2.5
988 + GFF6504 0.83 -0.6
988 + GFF6504 0.83 -1.7
988 + GFF6504 0.83 -1.9
988 + GFF6504 0.83 -0.1
988 + GFF6504 0.83 -1.1
989 - GFF6504 0.84 +0.6
989 - GFF6504 0.84 -2.4
989 - GFF6504 0.84 -1.4
989 - GFF6504 0.84 -2.5
989 - GFF6504 0.84 -1.4
989 - GFF6504 0.84 -0.2
994 - GFF6504 0.84 +1.6
1,045 + +2.5
1,046 - -1.1
1,099 + +0.9
1,339 - GFF6505 0.54 -1.3
1,339 - GFF6505 0.54 -2.1
1,582 - +0.5
1,596 - -0.9
1,613 + -2.5
1,643 + -0.9
1,644 - +0.3
1,644 - +1.4
1,644 - -0.5
1,906 + GFF6506 0.85 -0.2
1,906 + GFF6506 0.85 -1.9
1,906 + GFF6506 0.85 -3.2
1,906 + GFF6506 0.85 -0.2
1,907 - GFF6506 0.85 -0.1
1,907 - GFF6506 0.85 +0.4
1,972 + +0.7
1,973 - -1.1
1,990 + -0.6
2,003 + -4.1
2,003 + -2.1
2,004 - +0.3
2,004 - -1.2
2,004 - -0.6
2,105 + -1.0
2,105 + -1.6
2,106 - -0.3

Or see this region's nucleotide sequence