Strain Fitness in Variovorax sp. SCN45 around GFF6402

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6401 and GFF6402 overlap by 4 nucleotidesGFF6402 and GFF6403 are separated by 27 nucleotidesGFF6403 and GFF6404 are separated by 148 nucleotides GFF6401 - Formiminoglutamic iminohydrolase (EC 3.5.3.13), at 75,354 to 76,736 GFF6401 GFF6402 - Imidazolonepropionase (EC 3.5.2.7), at 76,733 to 77,959 GFF6402 GFF6403 - Stresses-induced protein Ves (HutD), at 77,987 to 78,559 GFF6403 GFF6404 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 78,708 to 79,376 GFF6404 Position (kb) 76 77 78Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 75.883 kb on + strand, within GFF6401at 75.883 kb on + strand, within GFF6401at 75.884 kb on - strand, within GFF6401at 75.884 kb on - strand, within GFF6401at 75.890 kb on - strand, within GFF6401at 76.255 kb on + strand, within GFF6401at 76.255 kb on + strand, within GFF6401at 76.255 kb on + strand, within GFF6401at 76.339 kb on + strand, within GFF6401at 76.369 kb on + strand, within GFF6401at 76.369 kb on + strand, within GFF6401at 76.369 kb on + strand, within GFF6401at 76.369 kb on + strand, within GFF6401at 76.369 kb on + strand, within GFF6401at 76.370 kb on - strand, within GFF6401at 76.370 kb on - strand, within GFF6401at 76.370 kb on - strand, within GFF6401at 76.370 kb on - strand, within GFF6401at 76.417 kb on + strand, within GFF6401at 76.418 kb on - strand, within GFF6401at 76.474 kb on + strand, within GFF6401at 76.474 kb on + strand, within GFF6401at 76.475 kb on - strand, within GFF6401at 76.475 kb on - strand, within GFF6401at 76.475 kb on - strand, within GFF6401at 76.475 kb on - strand, within GFF6401at 76.475 kb on - strand, within GFF6401at 76.475 kb on - strand, within GFF6401at 76.804 kb on - strandat 77.091 kb on + strand, within GFF6402at 77.091 kb on + strand, within GFF6402at 77.091 kb on + strand, within GFF6402at 77.091 kb on + strand, within GFF6402at 77.091 kb on + strand, within GFF6402at 77.091 kb on + strand, within GFF6402at 77.091 kb on + strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.094 kb on + strand, within GFF6402at 77.095 kb on - strand, within GFF6402at 77.095 kb on - strand, within GFF6402at 77.095 kb on - strand, within GFF6402at 77.194 kb on - strand, within GFF6402at 77.397 kb on + strand, within GFF6402at 77.397 kb on + strand, within GFF6402at 77.397 kb on + strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.472 kb on + strand, within GFF6402at 77.561 kb on + strand, within GFF6402at 77.561 kb on + strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.685 kb on + strand, within GFF6402at 77.685 kb on + strand, within GFF6402at 77.685 kb on + strand, within GFF6402at 77.686 kb on - strand, within GFF6402at 77.736 kb on + strand, within GFF6402at 77.737 kb on - strand, within GFF6402at 77.737 kb on - strand, within GFF6402at 78.299 kb on + strand, within GFF6403at 78.299 kb on + strand, within GFF6403at 78.694 kb on + strandat 78.694 kb on + strandat 78.694 kb on + strandat 78.694 kb on + strandat 78.694 kb on + strandat 78.694 kb on + strandat 78.694 kb on + strandat 78.695 kb on - strandat 78.695 kb on - strandat 78.695 kb on - strandat 78.787 kb on + strand, within GFF6404at 78.787 kb on + strand, within GFF6404at 78.787 kb on + strand, within GFF6404at 78.787 kb on + strand, within GFF6404at 78.787 kb on + strand, within GFF6404at 78.788 kb on - strand, within GFF6404at 78.788 kb on - strand, within GFF6404at 78.788 kb on - strand, within GFF6404at 78.788 kb on - strand, within GFF6404at 78.808 kb on + strand, within GFF6404at 78.808 kb on + strand, within GFF6404at 78.808 kb on + strand, within GFF6404at 78.809 kb on - strand, within GFF6404at 78.809 kb on - strand, within GFF6404at 78.809 kb on - strand, within GFF6404at 78.809 kb on - strand, within GFF6404at 78.809 kb on - strand, within GFF6404at 78.927 kb on + strand, within GFF6404

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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75,883 + GFF6401 0.38 -1.7
75,883 + GFF6401 0.38 -0.3
75,884 - GFF6401 0.38 -0.5
75,884 - GFF6401 0.38 -1.0
75,890 - GFF6401 0.39 -2.7
76,255 + GFF6401 0.65 +0.1
76,255 + GFF6401 0.65 -0.1
76,255 + GFF6401 0.65 +0.3
76,339 + GFF6401 0.71 -0.9
76,369 + GFF6401 0.73 -1.4
76,369 + GFF6401 0.73 -1.2
76,369 + GFF6401 0.73 -1.9
76,369 + GFF6401 0.73 -0.6
76,369 + GFF6401 0.73 +0.9
76,370 - GFF6401 0.73 -1.4
76,370 - GFF6401 0.73 -0.0
76,370 - GFF6401 0.73 -1.5
76,370 - GFF6401 0.73 -0.9
76,417 + GFF6401 0.77 -2.2
76,418 - GFF6401 0.77 -2.5
76,474 + GFF6401 0.81 -1.0
76,474 + GFF6401 0.81 +1.3
76,475 - GFF6401 0.81 -1.7
76,475 - GFF6401 0.81 -1.0
76,475 - GFF6401 0.81 -3.4
76,475 - GFF6401 0.81 +0.7
76,475 - GFF6401 0.81 -1.5
76,475 - GFF6401 0.81 -2.0
76,804 - -0.3
77,091 + GFF6402 0.29 -0.3
77,091 + GFF6402 0.29 -1.3
77,091 + GFF6402 0.29 -2.0
77,091 + GFF6402 0.29 +1.4
77,091 + GFF6402 0.29 -1.0
77,091 + GFF6402 0.29 -1.4
77,091 + GFF6402 0.29 +1.9
77,092 - GFF6402 0.29 -0.4
77,092 - GFF6402 0.29 +1.0
77,092 - GFF6402 0.29 +0.6
77,092 - GFF6402 0.29 -2.1
77,092 - GFF6402 0.29 +1.2
77,092 - GFF6402 0.29 -0.5
77,092 - GFF6402 0.29 -2.2
77,092 - GFF6402 0.29 +2.3
77,092 - GFF6402 0.29 +2.3
77,094 + GFF6402 0.29 -1.2
77,095 - GFF6402 0.30 -2.1
77,095 - GFF6402 0.30 +1.3
77,095 - GFF6402 0.30 -1.7
77,194 - GFF6402 0.38 -3.2
77,397 + GFF6402 0.54 +0.3
77,397 + GFF6402 0.54 +0.3
77,397 + GFF6402 0.54 +1.0
77,398 - GFF6402 0.54 +0.5
77,398 - GFF6402 0.54 +0.6
77,398 - GFF6402 0.54 -1.4
77,398 - GFF6402 0.54 -0.2
77,398 - GFF6402 0.54 +0.4
77,398 - GFF6402 0.54 -1.9
77,398 - GFF6402 0.54 -3.2
77,398 - GFF6402 0.54 -3.0
77,472 + GFF6402 0.60 -0.6
77,561 + GFF6402 0.67 -1.7
77,561 + GFF6402 0.67 +1.7
77,562 - GFF6402 0.68 -0.2
77,562 - GFF6402 0.68 +0.2
77,562 - GFF6402 0.68 -0.0
77,562 - GFF6402 0.68 +1.0
77,562 - GFF6402 0.68 -0.7
77,562 - GFF6402 0.68 +1.3
77,562 - GFF6402 0.68 +3.4
77,562 - GFF6402 0.68 +0.0
77,685 + GFF6402 0.78 -0.3
77,685 + GFF6402 0.78 -2.2
77,685 + GFF6402 0.78 -1.9
77,686 - GFF6402 0.78 -1.0
77,736 + GFF6402 0.82 +0.9
77,737 - GFF6402 0.82 +1.2
77,737 - GFF6402 0.82 +0.6
78,299 + GFF6403 0.54 -0.3
78,299 + GFF6403 0.54 +3.3
78,694 + -3.9
78,694 + -2.0
78,694 + +0.3
78,694 + -1.4
78,694 + +0.5
78,694 + -1.3
78,694 + -1.7
78,695 - -1.2
78,695 - -0.3
78,695 - -0.4
78,787 + GFF6404 0.12 -0.5
78,787 + GFF6404 0.12 +1.3
78,787 + GFF6404 0.12 -0.7
78,787 + GFF6404 0.12 -1.3
78,787 + GFF6404 0.12 +0.7
78,788 - GFF6404 0.12 +2.3
78,788 - GFF6404 0.12 -0.9
78,788 - GFF6404 0.12 -1.2
78,788 - GFF6404 0.12 -0.0
78,808 + GFF6404 0.15 -0.5
78,808 + GFF6404 0.15 +1.7
78,808 + GFF6404 0.15 +0.3
78,809 - GFF6404 0.15 +0.5
78,809 - GFF6404 0.15 +3.3
78,809 - GFF6404 0.15 +1.1
78,809 - GFF6404 0.15 -0.4
78,809 - GFF6404 0.15 -2.8
78,927 + GFF6404 0.33 +1.0

Or see this region's nucleotide sequence