Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6395 and GFF6396 are separated by 12 nucleotides GFF6396 and GFF6397 are separated by 125 nucleotides GFF6397 and GFF6398 are separated by 6 nucleotides GFF6398 and GFF6399 are separated by 167 nucleotides
GFF6395 - hypothetical protein, at 70,151 to 71,083
GFF6395
GFF6396 - hypothetical protein, at 71,096 to 71,533
GFF6396
GFF6397 - LysR family transcriptional regulator PA2758, at 71,659 to 72,585
GFF6397
GFF6398 - SH3, type 3, at 72,592 to 73,257
GFF6398
GFF6399 - 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), N-terminal domain, at 73,425 to 74,477
GFF6399
Position (kb) 71
72
73 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 70.871 kb on + strand, within GFF6395 at 70.871 kb on + strand, within GFF6395 at 70.871 kb on + strand, within GFF6395 at 70.872 kb on - strand, within GFF6395 at 70.872 kb on - strand, within GFF6395 at 70.872 kb on - strand, within GFF6395 at 70.878 kb on - strand, within GFF6395 at 70.878 kb on - strand, within GFF6395 at 70.946 kb on + strand, within GFF6395 at 71.081 kb on + strand at 71.081 kb on + strand at 71.082 kb on - strand at 71.082 kb on - strand at 71.082 kb on - strand at 71.082 kb on - strand at 71.175 kb on + strand, within GFF6396 at 71.175 kb on + strand, within GFF6396 at 71.175 kb on + strand, within GFF6396 at 71.175 kb on + strand, within GFF6396 at 71.175 kb on + strand, within GFF6396 at 71.175 kb on + strand, within GFF6396 at 71.175 kb on + strand, within GFF6396 at 71.175 kb on + strand, within GFF6396 at 71.175 kb on + strand, within GFF6396 at 71.175 kb on + strand, within GFF6396 at 71.175 kb on + strand, within GFF6396 at 71.176 kb on - strand, within GFF6396 at 71.176 kb on - strand, within GFF6396 at 71.176 kb on - strand, within GFF6396 at 71.176 kb on - strand, within GFF6396 at 71.493 kb on + strand at 71.493 kb on + strand at 71.494 kb on - strand at 71.494 kb on - strand at 71.494 kb on - strand at 71.494 kb on - strand at 71.505 kb on + strand at 71.505 kb on + strand at 71.505 kb on + strand at 71.505 kb on + strand at 71.505 kb on + strand at 71.505 kb on + strand at 71.505 kb on + strand at 71.505 kb on + strand at 71.505 kb on + strand at 71.505 kb on + strand at 71.505 kb on + strand at 71.505 kb on + strand at 71.505 kb on + strand at 71.505 kb on + strand at 71.505 kb on + strand at 71.505 kb on + strand at 71.505 kb on + strand at 71.505 kb on + strand at 71.505 kb on + strand at 71.505 kb on + strand at 71.505 kb on + strand at 71.505 kb on - strand at 71.506 kb on - strand at 71.506 kb on - strand at 71.506 kb on - strand at 71.506 kb on - strand at 71.506 kb on - strand at 71.506 kb on - strand at 71.506 kb on - strand at 71.506 kb on - strand at 71.506 kb on - strand at 71.506 kb on - strand at 71.506 kb on - strand at 71.506 kb on - strand at 71.506 kb on - strand at 71.506 kb on - strand at 71.506 kb on - strand at 71.506 kb on - strand at 71.506 kb on - strand at 71.506 kb on - strand at 71.506 kb on - strand at 71.584 kb on + strand at 71.584 kb on + strand at 71.585 kb on - strand at 71.585 kb on - strand at 71.585 kb on - strand at 71.585 kb on - strand at 71.585 kb on - strand at 71.585 kb on - strand at 71.585 kb on - strand at 71.634 kb on - strand at 71.644 kb on - strand at 72.013 kb on + strand, within GFF6397 at 72.013 kb on + strand, within GFF6397 at 72.014 kb on - strand, within GFF6397 at 72.902 kb on + strand, within GFF6398 at 72.902 kb on + strand, within GFF6398 at 72.903 kb on - strand, within GFF6398 at 72.903 kb on - strand, within GFF6398 at 72.903 kb on - strand, within GFF6398 at 72.903 kb on - strand, within GFF6398 at 72.905 kb on + strand, within GFF6398 at 72.905 kb on + strand, within GFF6398 at 72.905 kb on + strand, within GFF6398 at 72.905 kb on + strand, within GFF6398 at 72.905 kb on + strand, within GFF6398 at 72.905 kb on + strand, within GFF6398 at 72.905 kb on + strand, within GFF6398 at 72.905 kb on + strand, within GFF6398 at 72.905 kb on + strand, within GFF6398 at 72.905 kb on + strand, within GFF6398 at 72.905 kb on + strand, within GFF6398 at 72.905 kb on + strand, within GFF6398 at 72.906 kb on - strand, within GFF6398 at 72.906 kb on - strand, within GFF6398 at 72.906 kb on - strand, within GFF6398 at 72.906 kb on - strand, within GFF6398 at 72.906 kb on - strand, within GFF6398 at 72.906 kb on - strand, within GFF6398 at 72.906 kb on - strand, within GFF6398 at 72.906 kb on - strand, within GFF6398 at 72.906 kb on - strand, within GFF6398 at 72.906 kb on - strand, within GFF6398 at 72.906 kb on - strand, within GFF6398 at 72.906 kb on - strand, within GFF6398 at 72.906 kb on - strand, within GFF6398 at 72.906 kb on - strand, within GFF6398 at 72.906 kb on - strand, within GFF6398 at 72.906 kb on - strand, within GFF6398 at 72.906 kb on - strand, within GFF6398 at 72.906 kb on - strand, within GFF6398 at 72.906 kb on - strand, within GFF6398 at 72.906 kb on - strand, within GFF6398 at 72.906 kb on - strand, within GFF6398 at 72.906 kb on - strand, within GFF6398 at 72.917 kb on + strand, within GFF6398 at 72.917 kb on + strand, within GFF6398 at 72.918 kb on - strand, within GFF6398 at 72.918 kb on - strand, within GFF6398 at 72.918 kb on - strand, within GFF6398 at 72.965 kb on + strand, within GFF6398 at 72.965 kb on + strand, within GFF6398 at 72.965 kb on + strand, within GFF6398 at 72.965 kb on + strand, within GFF6398 at 72.965 kb on + strand, within GFF6398 at 72.965 kb on + strand, within GFF6398 at 72.965 kb on + strand, within GFF6398 at 72.965 kb on + strand, within GFF6398 at 72.965 kb on + strand, within GFF6398 at 72.965 kb on + strand, within GFF6398 at 72.965 kb on + strand, within GFF6398 at 72.965 kb on + strand, within GFF6398 at 72.965 kb on + strand, within GFF6398 at 72.965 kb on + strand, within GFF6398 at 72.966 kb on - strand, within GFF6398 at 72.966 kb on - strand, within GFF6398 at 72.966 kb on - strand, within GFF6398 at 72.966 kb on - strand, within GFF6398 at 72.966 kb on - strand, within GFF6398 at 72.966 kb on - strand, within GFF6398 at 72.966 kb on - strand, within GFF6398 at 72.966 kb on - strand, within GFF6398 at 72.966 kb on - strand, within GFF6398 at 72.966 kb on - strand, within GFF6398 at 72.995 kb on + strand, within GFF6398 at 72.995 kb on + strand, within GFF6398 at 72.996 kb on - strand, within GFF6398 at 72.996 kb on - strand, within GFF6398 at 72.996 kb on - strand, within GFF6398 at 73.001 kb on + strand, within GFF6398 at 73.001 kb on + strand, within GFF6398 at 73.001 kb on + strand, within GFF6398 at 73.001 kb on + strand, within GFF6398 at 73.001 kb on + strand, within GFF6398 at 73.001 kb on + strand, within GFF6398 at 73.001 kb on + strand, within GFF6398 at 73.001 kb on + strand, within GFF6398 at 73.002 kb on - strand, within GFF6398 at 73.002 kb on - strand, within GFF6398 at 73.002 kb on - strand, within GFF6398 at 73.002 kb on - strand, within GFF6398 at 73.002 kb on - strand, within GFF6398 at 73.067 kb on + strand, within GFF6398 at 73.068 kb on - strand, within GFF6398 at 73.207 kb on + strand at 73.207 kb on + strand at 73.207 kb on + strand at 73.207 kb on + strand at 73.208 kb on - strand at 73.208 kb on - strand at 73.281 kb on + strand at 73.281 kb on + strand at 73.281 kb on + strand at 73.282 kb on - strand at 73.282 kb on - strand at 73.282 kb on - strand at 73.282 kb on - strand at 73.282 kb on - strand at 73.426 kb on + strand at 73.426 kb on + strand at 73.426 kb on + strand at 73.426 kb on + strand at 73.426 kb on + strand at 73.427 kb on - strand at 73.427 kb on - strand at 73.427 kb on - strand at 73.427 kb on - strand at 73.427 kb on - strand at 73.427 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 70,871 + GFF6395 0.77 -1.2 70,871 + GFF6395 0.77 -1.2 70,871 + GFF6395 0.77 -1.1 70,872 - GFF6395 0.77 +1.0 70,872 - GFF6395 0.77 +1.1 70,872 - GFF6395 0.77 +0.4 70,878 - GFF6395 0.78 -1.7 70,878 - GFF6395 0.78 +0.5 70,946 + GFF6395 0.85 -0.4 71,081 + -4.0 71,081 + +2.5 71,082 - -1.8 71,082 - +0.8 71,082 - -3.4 71,082 - -1.8 71,175 + GFF6396 0.18 -0.2 71,175 + GFF6396 0.18 -2.3 71,175 + GFF6396 0.18 +1.3 71,175 + GFF6396 0.18 +0.2 71,175 + GFF6396 0.18 +2.3 71,175 + GFF6396 0.18 -0.4 71,175 + GFF6396 0.18 -1.0 71,175 + GFF6396 0.18 -0.9 71,175 + GFF6396 0.18 +1.9 71,175 + GFF6396 0.18 +0.3 71,175 + GFF6396 0.18 -2.1 71,176 - GFF6396 0.18 -2.2 71,176 - GFF6396 0.18 -2.2 71,176 - GFF6396 0.18 -0.9 71,176 - GFF6396 0.18 -2.0 71,493 + -1.7 71,493 + -1.2 71,494 - -0.3 71,494 - -0.5 71,494 - +0.7 71,494 - -0.7 71,505 + +0.8 71,505 + -3.1 71,505 + -1.6 71,505 + +0.2 71,505 + -1.0 71,505 + -2.2 71,505 + -0.7 71,505 + -1.6 71,505 + -1.2 71,505 + +0.6 71,505 + -1.6 71,505 + +0.6 71,505 + -3.1 71,505 + -0.3 71,505 + +1.0 71,505 + -4.3 71,505 + -3.5 71,505 + -1.5 71,505 + -1.8 71,505 + +0.3 71,505 + -1.7 71,505 - -2.6 71,506 - -0.3 71,506 - -0.2 71,506 - -0.6 71,506 - +1.3 71,506 - -2.3 71,506 - -0.0 71,506 - -2.7 71,506 - +0.7 71,506 - +2.3 71,506 - -2.0 71,506 - -0.6 71,506 - -0.2 71,506 - -1.2 71,506 - -1.7 71,506 - -1.1 71,506 - +1.6 71,506 - +1.8 71,506 - -1.0 71,506 - +1.5 71,584 + +0.3 71,584 + +0.4 71,585 - +0.9 71,585 - +0.2 71,585 - -0.1 71,585 - +2.4 71,585 - -3.1 71,585 - -1.1 71,585 - -0.3 71,634 - -0.2 71,644 - +0.6 72,013 + GFF6397 0.38 -1.2 72,013 + GFF6397 0.38 -2.3 72,014 - GFF6397 0.38 -0.7 72,902 + GFF6398 0.47 +1.6 72,902 + GFF6398 0.47 +2.1 72,903 - GFF6398 0.47 -0.3 72,903 - GFF6398 0.47 +0.0 72,903 - GFF6398 0.47 -1.3 72,903 - GFF6398 0.47 +1.3 72,905 + GFF6398 0.47 -1.6 72,905 + GFF6398 0.47 -0.2 72,905 + GFF6398 0.47 -2.0 72,905 + GFF6398 0.47 +0.7 72,905 + GFF6398 0.47 -2.3 72,905 + GFF6398 0.47 -0.5 72,905 + GFF6398 0.47 +1.7 72,905 + GFF6398 0.47 +1.5 72,905 + GFF6398 0.47 +0.7 72,905 + GFF6398 0.47 -3.3 72,905 + GFF6398 0.47 +1.3 72,905 + GFF6398 0.47 -1.7 72,906 - GFF6398 0.47 -0.7 72,906 - GFF6398 0.47 -0.4 72,906 - GFF6398 0.47 -0.1 72,906 - GFF6398 0.47 +1.8 72,906 - GFF6398 0.47 +1.6 72,906 - GFF6398 0.47 +1.5 72,906 - GFF6398 0.47 -2.6 72,906 - GFF6398 0.47 -0.9 72,906 - GFF6398 0.47 +1.3 72,906 - GFF6398 0.47 -0.4 72,906 - GFF6398 0.47 -0.5 72,906 - GFF6398 0.47 +0.4 72,906 - GFF6398 0.47 -0.4 72,906 - GFF6398 0.47 +1.0 72,906 - GFF6398 0.47 -1.0 72,906 - GFF6398 0.47 -0.5 72,906 - GFF6398 0.47 -0.8 72,906 - GFF6398 0.47 -3.3 72,906 - GFF6398 0.47 +2.0 72,906 - GFF6398 0.47 +1.5 72,906 - GFF6398 0.47 +0.5 72,906 - GFF6398 0.47 +0.1 72,917 + GFF6398 0.49 +0.9 72,917 + GFF6398 0.49 -0.1 72,918 - GFF6398 0.49 -0.3 72,918 - GFF6398 0.49 -3.0 72,918 - GFF6398 0.49 -0.2 72,965 + GFF6398 0.56 -4.4 72,965 + GFF6398 0.56 -0.9 72,965 + GFF6398 0.56 +1.0 72,965 + GFF6398 0.56 +2.7 72,965 + GFF6398 0.56 +0.7 72,965 + GFF6398 0.56 -2.6 72,965 + GFF6398 0.56 +0.7 72,965 + GFF6398 0.56 -0.0 72,965 + GFF6398 0.56 +0.5 72,965 + GFF6398 0.56 -1.7 72,965 + GFF6398 0.56 +1.6 72,965 + GFF6398 0.56 +1.5 72,965 + GFF6398 0.56 -0.5 72,965 + GFF6398 0.56 +1.0 72,966 - GFF6398 0.56 -4.6 72,966 - GFF6398 0.56 +0.6 72,966 - GFF6398 0.56 +1.6 72,966 - GFF6398 0.56 -1.3 72,966 - GFF6398 0.56 -0.3 72,966 - GFF6398 0.56 -2.2 72,966 - GFF6398 0.56 +0.3 72,966 - GFF6398 0.56 -1.3 72,966 - GFF6398 0.56 +0.9 72,966 - GFF6398 0.56 -1.0 72,995 + GFF6398 0.61 +3.3 72,995 + GFF6398 0.61 -1.4 72,996 - GFF6398 0.61 -0.1 72,996 - GFF6398 0.61 +0.7 72,996 - GFF6398 0.61 -1.2 73,001 + GFF6398 0.61 +3.2 73,001 + GFF6398 0.61 +0.9 73,001 + GFF6398 0.61 -2.8 73,001 + GFF6398 0.61 +1.0 73,001 + GFF6398 0.61 -1.0 73,001 + GFF6398 0.61 -1.7 73,001 + GFF6398 0.61 -0.3 73,001 + GFF6398 0.61 +0.0 73,002 - GFF6398 0.62 +2.9 73,002 - GFF6398 0.62 -0.5 73,002 - GFF6398 0.62 -2.5 73,002 - GFF6398 0.62 -1.7 73,002 - GFF6398 0.62 -2.0 73,067 + GFF6398 0.71 -0.2 73,068 - GFF6398 0.71 -0.1 73,207 + +1.6 73,207 + -0.6 73,207 + -2.8 73,207 + -1.0 73,208 - -2.6 73,208 - -0.3 73,281 + +2.3 73,281 + -4.1 73,281 + -2.6 73,282 - -0.7 73,282 - +1.0 73,282 - -1.0 73,282 - -1.0 73,282 - +0.2 73,426 + +0.2 73,426 + -1.0 73,426 + +0.2 73,426 + -2.4 73,426 + +1.6 73,427 - -1.8 73,427 - -1.2 73,427 - -0.4 73,427 - -0.0 73,427 - +0.6 73,427 - +1.1
Or see this region's nucleotide sequence