Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6358 and GFF6359 are separated by 22 nucleotides GFF6359 and GFF6360 are separated by 17 nucleotides GFF6360 and GFF6361 are separated by 35 nucleotides
GFF6358 - T6SS protein serine/threonine phosphatase PppA, at 23,977 to 24,798
GFF6358
GFF6359 - FIG01219766: hypothetical protein, at 24,821 to 25,201
GFF6359
GFF6360 - FIG00432660: hypothetical protein, at 25,219 to 25,884
GFF6360
GFF6361 - Pentapeptide repeat family protein, at 25,920 to 26,990
GFF6361
Position (kb) 25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 24.379 kb on + strand, within GFF6358 at 24.721 kb on + strand at 24.721 kb on + strand at 24.722 kb on - strand at 24.833 kb on + strand at 24.834 kb on - strand at 24.834 kb on - strand at 25.071 kb on + strand, within GFF6359 at 25.071 kb on + strand, within GFF6359 at 25.071 kb on + strand, within GFF6359 at 25.071 kb on + strand, within GFF6359 at 25.072 kb on - strand, within GFF6359 at 25.072 kb on - strand, within GFF6359 at 25.072 kb on - strand, within GFF6359 at 25.072 kb on - strand, within GFF6359 at 25.072 kb on - strand, within GFF6359 at 25.072 kb on - strand, within GFF6359 at 25.151 kb on + strand, within GFF6359 at 25.556 kb on - strand, within GFF6360 at 25.590 kb on + strand, within GFF6360
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 24,379 + GFF6358 0.49 -0.3 24,721 + -1.0 24,721 + -0.5 24,722 - -1.5 24,833 + -0.7 24,834 - -0.9 24,834 - -2.1 25,071 + GFF6359 0.66 +0.4 25,071 + GFF6359 0.66 -0.4 25,071 + GFF6359 0.66 -0.7 25,071 + GFF6359 0.66 -1.1 25,072 - GFF6359 0.66 +0.0 25,072 - GFF6359 0.66 -1.3 25,072 - GFF6359 0.66 +1.3 25,072 - GFF6359 0.66 -0.8 25,072 - GFF6359 0.66 -2.5 25,072 - GFF6359 0.66 -0.1 25,151 + GFF6359 0.87 +0.7 25,556 - GFF6360 0.51 -0.9 25,590 + GFF6360 0.56 -2.9
Or see this region's nucleotide sequence