Strain Fitness in Variovorax sp. SCN45 around GFF6341

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
4,390	+				+0.6
4,390	+				-0.8
4,391	-				+1.1
4,391	-				-1.0
4,439	-				+0.3
4,661	-				-0.9
4,661	-				-2.5
4,796	+				+1.3
4,796	+				-0.8
4,796	+				+0.9
4,796	+				-1.3
4,796	+				-1.4
4,797	-				-2.5
4,797	-				-0.9
4,797	-				+0.4
5,171	+				-0.0
5,171	+				+0.4
5,172	-				-0.6
5,172	-				-0.0
5,172	-				-1.6
5,337	+		GFF6341	0.17	+1.4
5,337	+		GFF6341	0.17	+0.5
5,338	-		GFF6341	0.18	-3.0
5,338	-		GFF6341	0.18	+0.3
5,338	-		GFF6341	0.18	-1.9
5,368	+		GFF6341	0.29	+1.7
5,368	+		GFF6341	0.29	-2.7
5,368	+		GFF6341	0.29	-0.9
5,368	+		GFF6341	0.29	+0.9
5,368	+		GFF6341	0.29	-1.2
5,368	+		GFF6341	0.29	-0.0
5,369	-		GFF6341	0.30	-0.3
5,369	-		GFF6341	0.30	-2.7
5,369	-		GFF6341	0.30	-3.0
5,369	-		GFF6341	0.30	-1.2
5,369	-		GFF6341	0.30	-0.3
5,372	+		GFF6341	0.31	-2.6
5,372	+		GFF6341	0.31	+0.0
5,372	+		GFF6341	0.31	-1.4
5,373	-		GFF6341	0.31	-0.9
5,373	-		GFF6341	0.31	-0.2
5,373	-		GFF6341	0.31	+0.2
5,373	-		GFF6341	0.31	-2.3
5,373	-		GFF6341	0.31	+1.5
5,373	-		GFF6341	0.31	-0.2
5,397	-		GFF6341	0.41	-2.4
5,404	+		GFF6341	0.43	-1.7
5,478	+		GFF6341	0.72	+0.7
5,478	+		GFF6341	0.72	-1.9
5,478	+		GFF6341	0.72	-2.5
5,479	-		GFF6341	0.72	-1.7
5,479	-		GFF6341	0.72	-3.6
5,479	-		GFF6341	0.72	-1.5
5,494	-		GFF6341	0.78	+0.3
5,520	+		GFF6341	0.88	+0.2
5,521	-		GFF6341	0.89	-0.7
5,595	+				+1.1
5,595	+				+0.0
5,596	-				+1.8
5,596	-				-0.5
5,596	-				-1.0
5,596	-				+0.9
5,796	+				+0.3
5,797	-				+1.9
5,810	-				+0.8
5,865	+				-0.3
5,865	+				-0.7
5,866	-				+0.6
5,930	+				-0.5
5,931	-				+0.4
5,931	-				-1.4
5,931	-				-2.8
5,931	-				-1.2
5,988	+				+0.8
5,988	+				+1.6
5,989	-				-1.4
5,989	-				-2.4
5,989	-				-0.6
6,044	+				-2.7
6,045	-				+0.8
6,052	+				+0.3
6,052	+				-1.2
6,053	-				+1.8
6,053	-				-0.3
6,053	-				-2.0
6,053	-				+0.4
6,061	+				-1.6
6,061	+				-2.4
6,080	-				+0.2
6,080	-				+2.1
6,080	-				-0.3
6,103	+				-0.7
6,104	-				-1.5
6,104	-				-1.2
6,104	-				-1.7
6,213	+				+0.7
6,213	+				-1.3
6,214	-				+1.3
6,214	-				-2.6
6,214	-				+0.2
6,214	-				+0.5
6,214	-				+0.7
6,263	+				+2.0
6,263	+				-0.3
6,263	+				-0.1
6,263	+				-1.8
6,263	+				+0.5
6,263	+				+1.2
6,263	+				+2.3
6,263	+				-0.2
6,263	+				-1.3
6,263	+				-0.7
6,263	+				+1.6
6,264	-				-0.3
6,264	-				+0.9
6,264	-				-1.0
6,264	-				-3.5
6,264	-				-0.0
6,278	+				-1.6
6,278	+				-1.8
6,278	+				-0.6
6,278	+				-2.9
6,278	+				+0.6
6,278	+				+0.9
6,278	+				+0.5
6,279	-				-0.8
6,279	-				-2.0
6,350	-				-0.8
6,360	+				-1.2
6,360	+				+1.0
6,360	+				-0.3
6,360	+				+0.9
6,360	+				-0.0
6,360	+				-3.3
6,360	+				-0.7
6,360	+				-0.3
6,361	-				+2.8
6,361	-				+0.7
6,420	+		GFF6342	0.21	-1.5
6,420	+		GFF6342	0.21	-1.5
6,421	-		GFF6342	0.21	-0.1
6,421	-		GFF6342	0.21	+0.8
6,421	-		GFF6342	0.21	-2.0
6,427	+		GFF6342	0.23	-0.5
6,427	+		GFF6342	0.23	+0.7
6,428	-		GFF6342	0.23	+0.3