Strain Fitness in Variovorax sp. SCN45 around GFF6249

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6248 and GFF6249 overlap by 4 nucleotidesGFF6249 and GFF6250 overlap by 4 nucleotides GFF6248 - Site-specific recombinase, at 40,972 to 42,945 GFF6248 GFF6249 - Transporter, monovalent cation:proton antiporter-2 (CPA2) family, at 42,942 to 44,213 GFF6249 GFF6250 - Glutamate--cysteine ligase-like protein YbdK, at 44,210 to 45,430 GFF6250 Position (kb) 42 43 44 45Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4at 41.959 kb on + strand, within GFF6248at 41.959 kb on + strand, within GFF6248at 41.959 kb on + strand, within GFF6248at 41.959 kb on + strand, within GFF6248at 41.959 kb on + strand, within GFF6248at 41.959 kb on + strand, within GFF6248at 41.960 kb on - strand, within GFF6248at 41.960 kb on - strand, within GFF6248at 41.960 kb on - strand, within GFF6248at 41.960 kb on - strand, within GFF6248at 41.960 kb on - strand, within GFF6248at 41.960 kb on - strand, within GFF6248at 41.960 kb on - strand, within GFF6248at 41.960 kb on - strand, within GFF6248at 41.960 kb on - strand, within GFF6248at 41.960 kb on - strand, within GFF6248at 41.960 kb on - strand, within GFF6248at 41.983 kb on + strand, within GFF6248at 41.983 kb on + strand, within GFF6248at 41.984 kb on - strand, within GFF6248at 41.984 kb on - strand, within GFF6248at 41.984 kb on - strand, within GFF6248at 41.984 kb on - strand, within GFF6248at 41.984 kb on - strand, within GFF6248at 42.058 kb on + strand, within GFF6248at 42.058 kb on + strand, within GFF6248at 42.058 kb on + strand, within GFF6248at 42.058 kb on + strand, within GFF6248at 42.058 kb on + strand, within GFF6248at 42.059 kb on - strand, within GFF6248at 42.059 kb on - strand, within GFF6248at 42.059 kb on - strand, within GFF6248at 42.109 kb on + strand, within GFF6248at 42.109 kb on + strand, within GFF6248at 42.109 kb on + strand, within GFF6248at 42.109 kb on + strand, within GFF6248at 42.110 kb on - strand, within GFF6248at 42.110 kb on - strand, within GFF6248at 42.110 kb on - strand, within GFF6248at 42.424 kb on + strand, within GFF6248at 42.425 kb on - strand, within GFF6248at 42.425 kb on - strand, within GFF6248at 42.523 kb on + strand, within GFF6248at 42.523 kb on + strand, within GFF6248at 42.523 kb on + strand, within GFF6248at 42.523 kb on + strand, within GFF6248at 42.935 kb on + strandat 42.935 kb on + strandat 42.935 kb on + strandat 42.935 kb on + strandat 42.936 kb on - strandat 42.936 kb on - strandat 42.936 kb on - strandat 43.078 kb on - strand, within GFF6249at 43.078 kb on - strand, within GFF6249at 43.299 kb on + strand, within GFF6249at 43.299 kb on + strand, within GFF6249at 43.299 kb on + strand, within GFF6249at 43.299 kb on + strand, within GFF6249at 43.300 kb on - strand, within GFF6249at 43.300 kb on - strand, within GFF6249at 43.311 kb on + strand, within GFF6249at 43.312 kb on - strand, within GFF6249at 43.312 kb on - strand, within GFF6249at 43.476 kb on + strand, within GFF6249at 43.476 kb on + strand, within GFF6249at 43.476 kb on + strand, within GFF6249at 43.476 kb on + strand, within GFF6249at 43.476 kb on + strand, within GFF6249at 43.476 kb on + strand, within GFF6249at 43.477 kb on - strand, within GFF6249at 43.477 kb on - strand, within GFF6249at 43.477 kb on - strand, within GFF6249at 43.477 kb on - strand, within GFF6249at 43.495 kb on - strand, within GFF6249at 43.666 kb on + strand, within GFF6249at 43.666 kb on + strand, within GFF6249at 43.666 kb on + strand, within GFF6249at 43.666 kb on + strand, within GFF6249at 44.390 kb on + strand, within GFF6250at 44.391 kb on - strand, within GFF6250at 44.639 kb on + strand, within GFF6250at 44.639 kb on + strand, within GFF6250at 44.639 kb on + strand, within GFF6250at 44.639 kb on + strand, within GFF6250at 44.640 kb on - strand, within GFF6250at 44.675 kb on + strand, within GFF6250at 44.675 kb on + strand, within GFF6250at 44.676 kb on - strand, within GFF6250at 44.676 kb on - strand, within GFF6250at 44.676 kb on - strand, within GFF6250at 44.676 kb on - strand, within GFF6250at 44.778 kb on - strand, within GFF6250at 44.778 kb on - strand, within GFF6250at 44.778 kb on - strand, within GFF6250at 44.781 kb on + strand, within GFF6250at 44.781 kb on + strand, within GFF6250at 44.781 kb on + strand, within GFF6250at 44.781 kb on + strand, within GFF6250at 44.782 kb on - strand, within GFF6250at 44.928 kb on - strand, within GFF6250at 44.928 kb on - strand, within GFF6250at 45.074 kb on + strand, within GFF6250at 45.074 kb on + strand, within GFF6250at 45.074 kb on + strand, within GFF6250at 45.074 kb on + strand, within GFF6250at 45.075 kb on - strand, within GFF6250at 45.075 kb on - strand, within GFF6250at 45.075 kb on - strand, within GFF6250at 45.075 kb on - strand, within GFF6250at 45.137 kb on + strand, within GFF6250at 45.147 kb on - strand, within GFF6250at 45.152 kb on + strand, within GFF6250at 45.152 kb on + strand, within GFF6250at 45.152 kb on + strand, within GFF6250at 45.152 kb on + strand, within GFF6250at 45.152 kb on + strand, within GFF6250at 45.153 kb on - strand, within GFF6250at 45.153 kb on - strand, within GFF6250at 45.153 kb on - strand, within GFF6250at 45.153 kb on - strand, within GFF6250at 45.153 kb on - strand, within GFF6250at 45.194 kb on + strand, within GFF6250at 45.194 kb on + strand, within GFF6250at 45.195 kb on - strand, within GFF6250

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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41,959 + GFF6248 0.50 -2.4
41,959 + GFF6248 0.50 -4.6
41,959 + GFF6248 0.50 -0.1
41,959 + GFF6248 0.50 +0.7
41,959 + GFF6248 0.50 -0.9
41,959 + GFF6248 0.50 +0.1
41,960 - GFF6248 0.50 -2.4
41,960 - GFF6248 0.50 +1.7
41,960 - GFF6248 0.50 -1.5
41,960 - GFF6248 0.50 +0.4
41,960 - GFF6248 0.50 -0.7
41,960 - GFF6248 0.50 -1.0
41,960 - GFF6248 0.50 +2.0
41,960 - GFF6248 0.50 -3.6
41,960 - GFF6248 0.50 +0.2
41,960 - GFF6248 0.50 -1.9
41,960 - GFF6248 0.50 +1.0
41,983 + GFF6248 0.51 -1.8
41,983 + GFF6248 0.51 -1.1
41,984 - GFF6248 0.51 +1.6
41,984 - GFF6248 0.51 -0.6
41,984 - GFF6248 0.51 -2.2
41,984 - GFF6248 0.51 +0.3
41,984 - GFF6248 0.51 -0.9
42,058 + GFF6248 0.55 +1.8
42,058 + GFF6248 0.55 -1.3
42,058 + GFF6248 0.55 -1.4
42,058 + GFF6248 0.55 +0.7
42,058 + GFF6248 0.55 -0.5
42,059 - GFF6248 0.55 +1.7
42,059 - GFF6248 0.55 +0.2
42,059 - GFF6248 0.55 +0.9
42,109 + GFF6248 0.58 +3.8
42,109 + GFF6248 0.58 -0.9
42,109 + GFF6248 0.58 +1.0
42,109 + GFF6248 0.58 -0.4
42,110 - GFF6248 0.58 +0.2
42,110 - GFF6248 0.58 -0.2
42,110 - GFF6248 0.58 -0.2
42,424 + GFF6248 0.74 +1.2
42,425 - GFF6248 0.74 -1.9
42,425 - GFF6248 0.74 +2.2
42,523 + GFF6248 0.79 -1.0
42,523 + GFF6248 0.79 -2.5
42,523 + GFF6248 0.79 -2.7
42,523 + GFF6248 0.79 -2.3
42,935 + -0.4
42,935 + -0.4
42,935 + +0.9
42,935 + -1.4
42,936 - -0.4
42,936 - -0.8
42,936 - -0.9
43,078 - GFF6249 0.11 -4.8
43,078 - GFF6249 0.11 -2.8
43,299 + GFF6249 0.28 -3.2
43,299 + GFF6249 0.28 -2.3
43,299 + GFF6249 0.28 -0.8
43,299 + GFF6249 0.28 -2.6
43,300 - GFF6249 0.28 -1.6
43,300 - GFF6249 0.28 -1.7
43,311 + GFF6249 0.29 -3.0
43,312 - GFF6249 0.29 +0.2
43,312 - GFF6249 0.29 -3.7
43,476 + GFF6249 0.42 -2.9
43,476 + GFF6249 0.42 -3.6
43,476 + GFF6249 0.42 -1.0
43,476 + GFF6249 0.42 -3.5
43,476 + GFF6249 0.42 -3.9
43,476 + GFF6249 0.42 -3.3
43,477 - GFF6249 0.42 -2.4
43,477 - GFF6249 0.42 -4.7
43,477 - GFF6249 0.42 -0.4
43,477 - GFF6249 0.42 -1.7
43,495 - GFF6249 0.43 -1.7
43,666 + GFF6249 0.57 -1.6
43,666 + GFF6249 0.57 -3.3
43,666 + GFF6249 0.57 -4.0
43,666 + GFF6249 0.57 -3.2
44,390 + GFF6250 0.15 -3.0
44,391 - GFF6250 0.15 -3.6
44,639 + GFF6250 0.35 -3.6
44,639 + GFF6250 0.35 -3.7
44,639 + GFF6250 0.35 -4.6
44,639 + GFF6250 0.35 -4.1
44,640 - GFF6250 0.35 -2.0
44,675 + GFF6250 0.38 -1.2
44,675 + GFF6250 0.38 -3.6
44,676 - GFF6250 0.38 -1.8
44,676 - GFF6250 0.38 -3.0
44,676 - GFF6250 0.38 -2.9
44,676 - GFF6250 0.38 -2.1
44,778 - GFF6250 0.47 -3.0
44,778 - GFF6250 0.47 -2.7
44,778 - GFF6250 0.47 -3.0
44,781 + GFF6250 0.47 -4.6
44,781 + GFF6250 0.47 -4.2
44,781 + GFF6250 0.47 -2.7
44,781 + GFF6250 0.47 -5.1
44,782 - GFF6250 0.47 -3.4
44,928 - GFF6250 0.59 -1.2
44,928 - GFF6250 0.59 -4.0
45,074 + GFF6250 0.71 -6.1
45,074 + GFF6250 0.71 -2.5
45,074 + GFF6250 0.71 -0.8
45,074 + GFF6250 0.71 -5.2
45,075 - GFF6250 0.71 -1.7
45,075 - GFF6250 0.71 -2.5
45,075 - GFF6250 0.71 -2.8
45,075 - GFF6250 0.71 -3.2
45,137 + GFF6250 0.76 -1.4
45,147 - GFF6250 0.77 -4.6
45,152 + GFF6250 0.77 -2.5
45,152 + GFF6250 0.77 -3.9
45,152 + GFF6250 0.77 -1.7
45,152 + GFF6250 0.77 -3.6
45,152 + GFF6250 0.77 -1.6
45,153 - GFF6250 0.77 +1.2
45,153 - GFF6250 0.77 -3.0
45,153 - GFF6250 0.77 -2.5
45,153 - GFF6250 0.77 -2.6
45,153 - GFF6250 0.77 -2.5
45,194 + GFF6250 0.81 -0.6
45,194 + GFF6250 0.81 -5.0
45,195 - GFF6250 0.81 -0.4

Or see this region's nucleotide sequence