Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6244 and GFF6245 are separated by 160 nucleotides GFF6245 and GFF6246 overlap by 11 nucleotides GFF6246 and GFF6247 are separated by 51 nucleotides GFF6247 and GFF6248 are separated by 42 nucleotides
GFF6244 - Predicted deacylase, at 38,369 to 39,373
GFF6244
GFF6245 - no description, at 39,534 to 39,788
GFF6245
GFF6246 - Ribulose-phosphate 3-epimerase (EC 5.1.3.1), at 39,778 to 40,473
GFF6246
GFF6247 - ApaG protein, at 40,525 to 40,929
GFF6247
GFF6248 - Site-specific recombinase, at 40,972 to 42,945
GFF6248
Position (kb) 39
40
41 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 38.781 kb on + strand, within GFF6244 at 38.782 kb on - strand, within GFF6244 at 38.782 kb on - strand, within GFF6244 at 38.782 kb on - strand, within GFF6244 at 38.782 kb on - strand, within GFF6244 at 38.782 kb on - strand, within GFF6244 at 38.782 kb on - strand, within GFF6244 at 38.862 kb on + strand, within GFF6244 at 38.862 kb on + strand, within GFF6244 at 38.862 kb on + strand, within GFF6244 at 38.862 kb on + strand, within GFF6244 at 38.862 kb on + strand, within GFF6244 at 38.862 kb on + strand, within GFF6244 at 38.863 kb on - strand, within GFF6244 at 38.863 kb on - strand, within GFF6244 at 38.863 kb on - strand, within GFF6244 at 38.863 kb on - strand, within GFF6244 at 38.863 kb on - strand, within GFF6244 at 38.863 kb on - strand, within GFF6244 at 39.079 kb on - strand, within GFF6244 at 39.079 kb on - strand, within GFF6244 at 39.383 kb on - strand at 39.428 kb on - strand at 39.428 kb on - strand at 39.428 kb on - strand at 39.452 kb on + strand at 39.475 kb on + strand at 39.475 kb on + strand at 39.475 kb on + strand at 39.475 kb on + strand at 39.475 kb on + strand at 39.476 kb on - strand at 39.476 kb on - strand at 39.476 kb on - strand at 39.762 kb on + strand, within GFF6245 at 39.762 kb on + strand, within GFF6245 at 39.833 kb on + strand at 39.834 kb on - strand at 39.834 kb on - strand at 40.193 kb on + strand, within GFF6246 at 40.193 kb on + strand, within GFF6246 at 40.193 kb on + strand, within GFF6246 at 40.193 kb on + strand, within GFF6246 at 40.193 kb on + strand, within GFF6246 at 40.194 kb on - strand, within GFF6246 at 40.194 kb on - strand, within GFF6246 at 40.194 kb on - strand, within GFF6246 at 40.296 kb on - strand, within GFF6246 at 40.346 kb on + strand, within GFF6246 at 40.346 kb on + strand, within GFF6246 at 40.346 kb on + strand, within GFF6246 at 40.346 kb on + strand, within GFF6246 at 40.346 kb on + strand, within GFF6246 at 40.346 kb on + strand, within GFF6246 at 40.347 kb on - strand, within GFF6246 at 40.347 kb on - strand, within GFF6246 at 40.347 kb on - strand, within GFF6246 at 40.347 kb on - strand, within GFF6246 at 40.347 kb on - strand, within GFF6246 at 40.347 kb on - strand, within GFF6246 at 40.347 kb on - strand, within GFF6246 at 40.473 kb on + strand at 40.474 kb on - strand at 40.522 kb on - strand at 40.557 kb on - strand at 40.557 kb on - strand at 40.609 kb on + strand, within GFF6247 at 40.609 kb on + strand, within GFF6247 at 40.609 kb on + strand, within GFF6247 at 40.609 kb on + strand, within GFF6247 at 40.609 kb on + strand, within GFF6247 at 40.609 kb on + strand, within GFF6247 at 40.609 kb on + strand, within GFF6247 at 40.609 kb on + strand, within GFF6247 at 40.609 kb on + strand, within GFF6247 at 40.610 kb on - strand, within GFF6247 at 40.610 kb on - strand, within GFF6247 at 40.610 kb on - strand, within GFF6247 at 40.610 kb on - strand, within GFF6247 at 40.610 kb on - strand, within GFF6247 at 40.610 kb on - strand, within GFF6247 at 40.610 kb on - strand, within GFF6247 at 40.610 kb on - strand, within GFF6247 at 40.621 kb on + strand, within GFF6247 at 40.621 kb on + strand, within GFF6247 at 40.621 kb on + strand, within GFF6247 at 40.774 kb on + strand, within GFF6247 at 40.775 kb on - strand, within GFF6247 at 40.919 kb on + strand at 41.062 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 38,781 + GFF6244 0.41 +0.9 38,782 - GFF6244 0.41 -1.8 38,782 - GFF6244 0.41 +1.2 38,782 - GFF6244 0.41 -1.9 38,782 - GFF6244 0.41 -1.1 38,782 - GFF6244 0.41 -2.2 38,782 - GFF6244 0.41 -0.1 38,862 + GFF6244 0.49 -2.1 38,862 + GFF6244 0.49 +0.2 38,862 + GFF6244 0.49 -0.7 38,862 + GFF6244 0.49 -1.9 38,862 + GFF6244 0.49 +0.2 38,862 + GFF6244 0.49 +0.2 38,863 - GFF6244 0.49 +0.3 38,863 - GFF6244 0.49 +1.9 38,863 - GFF6244 0.49 +2.2 38,863 - GFF6244 0.49 +2.0 38,863 - GFF6244 0.49 -1.6 38,863 - GFF6244 0.49 +0.0 39,079 - GFF6244 0.71 -2.1 39,079 - GFF6244 0.71 +1.8 39,383 - +1.2 39,428 - -0.6 39,428 - +0.3 39,428 - +0.5 39,452 + +3.1 39,475 + +1.1 39,475 + -1.6 39,475 + +0.6 39,475 + +2.8 39,475 + -3.1 39,476 - +0.8 39,476 - -0.9 39,476 - -0.4 39,762 + GFF6245 0.89 +0.4 39,762 + GFF6245 0.89 +0.9 39,833 + -1.5 39,834 - -0.8 39,834 - +1.2 40,193 + GFF6246 0.60 -0.2 40,193 + GFF6246 0.60 +0.6 40,193 + GFF6246 0.60 -1.3 40,193 + GFF6246 0.60 -1.0 40,193 + GFF6246 0.60 -2.4 40,194 - GFF6246 0.60 -2.0 40,194 - GFF6246 0.60 +0.2 40,194 - GFF6246 0.60 -0.8 40,296 - GFF6246 0.74 -0.2 40,346 + GFF6246 0.82 -2.8 40,346 + GFF6246 0.82 -1.3 40,346 + GFF6246 0.82 +0.6 40,346 + GFF6246 0.82 -1.8 40,346 + GFF6246 0.82 -0.4 40,346 + GFF6246 0.82 +0.2 40,347 - GFF6246 0.82 -1.5 40,347 - GFF6246 0.82 -1.5 40,347 - GFF6246 0.82 -2.1 40,347 - GFF6246 0.82 -1.3 40,347 - GFF6246 0.82 -1.3 40,347 - GFF6246 0.82 -0.4 40,347 - GFF6246 0.82 +0.6 40,473 + +0.7 40,474 - -0.8 40,522 - -0.8 40,557 - +0.9 40,557 - -3.4 40,609 + GFF6247 0.21 -1.3 40,609 + GFF6247 0.21 +0.2 40,609 + GFF6247 0.21 +0.3 40,609 + GFF6247 0.21 +1.2 40,609 + GFF6247 0.21 -0.3 40,609 + GFF6247 0.21 +0.4 40,609 + GFF6247 0.21 +0.5 40,609 + GFF6247 0.21 +0.6 40,609 + GFF6247 0.21 -1.0 40,610 - GFF6247 0.21 -0.6 40,610 - GFF6247 0.21 -2.8 40,610 - GFF6247 0.21 -1.4 40,610 - GFF6247 0.21 -0.4 40,610 - GFF6247 0.21 -3.6 40,610 - GFF6247 0.21 -1.9 40,610 - GFF6247 0.21 +0.1 40,610 - GFF6247 0.21 +0.2 40,621 + GFF6247 0.24 -1.7 40,621 + GFF6247 0.24 -0.0 40,621 + GFF6247 0.24 +2.0 40,774 + GFF6247 0.61 -2.6 40,775 - GFF6247 0.62 -0.0 40,919 + -2.2 41,062 - -1.4
Or see this region's nucleotide sequence