Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6167 and GFF6168 are separated by 22 nucleotides GFF6168 and GFF6169 overlap by 4 nucleotides GFF6169 and GFF6170 overlap by 4 nucleotides GFF6170 and GFF6171 overlap by 4 nucleotides
GFF6167 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 72,422 to 73,426
GFF6167
GFF6168 - Na(+) H(+) antiporter subunit G, at 73,449 to 73,820
GFF6168
GFF6169 - Na(+) H(+) antiporter subunit F, at 73,817 to 74,095
GFF6169
GFF6170 - Na(+) H(+) antiporter subunit E, at 74,092 to 74,583
GFF6170
GFF6171 - Na(+) H(+) antiporter subunit D, at 74,580 to 76,298
GFF6171
Position (kb) 73
74 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 72.558 kb on - strand, within GFF6167 at 72.558 kb on - strand, within GFF6167 at 72.558 kb on - strand, within GFF6167 at 72.560 kb on + strand, within GFF6167 at 72.560 kb on + strand, within GFF6167 at 72.560 kb on + strand, within GFF6167 at 72.561 kb on - strand, within GFF6167 at 72.561 kb on - strand, within GFF6167 at 72.582 kb on - strand, within GFF6167 at 72.743 kb on + strand, within GFF6167 at 72.767 kb on + strand, within GFF6167 at 72.767 kb on + strand, within GFF6167 at 72.767 kb on + strand, within GFF6167 at 72.767 kb on + strand, within GFF6167 at 72.767 kb on + strand, within GFF6167 at 72.977 kb on + strand, within GFF6167 at 72.978 kb on - strand, within GFF6167 at 72.978 kb on - strand, within GFF6167 at 73.058 kb on + strand, within GFF6167 at 73.059 kb on - strand, within GFF6167 at 73.059 kb on - strand, within GFF6167 at 73.088 kb on + strand, within GFF6167 at 73.145 kb on + strand, within GFF6167 at 73.145 kb on + strand, within GFF6167 at 73.322 kb on + strand, within GFF6167 at 73.323 kb on - strand, within GFF6167 at 73.361 kb on + strand at 73.362 kb on - strand at 73.424 kb on + strand at 73.424 kb on + strand at 73.424 kb on + strand at 73.424 kb on + strand at 73.424 kb on + strand at 73.424 kb on + strand at 73.424 kb on + strand at 73.424 kb on + strand at 73.424 kb on + strand at 73.424 kb on + strand at 73.424 kb on + strand at 73.425 kb on - strand at 73.425 kb on - strand at 73.425 kb on - strand at 73.637 kb on - strand, within GFF6168 at 73.637 kb on - strand, within GFF6168 at 73.908 kb on + strand, within GFF6169 at 73.908 kb on + strand, within GFF6169 at 73.908 kb on + strand, within GFF6169 at 73.909 kb on - strand, within GFF6169 at 73.909 kb on - strand, within GFF6169 at 73.909 kb on - strand, within GFF6169 at 73.909 kb on - strand, within GFF6169 at 73.909 kb on - strand, within GFF6169 at 73.909 kb on - strand, within GFF6169 at 73.965 kb on + strand, within GFF6169 at 73.965 kb on + strand, within GFF6169 at 73.965 kb on + strand, within GFF6169 at 73.965 kb on + strand, within GFF6169 at 73.965 kb on + strand, within GFF6169 at 73.965 kb on + strand, within GFF6169 at 73.965 kb on + strand, within GFF6169 at 73.965 kb on + strand, within GFF6169 at 73.965 kb on + strand, within GFF6169 at 73.966 kb on - strand, within GFF6169 at 73.966 kb on - strand, within GFF6169 at 73.966 kb on - strand, within GFF6169 at 73.966 kb on - strand, within GFF6169 at 74.294 kb on - strand, within GFF6170 at 74.378 kb on + strand, within GFF6170 at 74.378 kb on + strand, within GFF6170 at 74.379 kb on - strand, within GFF6170 at 74.379 kb on - strand, within GFF6170 at 74.379 kb on - strand, within GFF6170 at 74.379 kb on - strand, within GFF6170 at 74.379 kb on - strand, within GFF6170 at 74.662 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 72,558 - GFF6167 0.14 -1.1 72,558 - GFF6167 0.14 -1.6 72,558 - GFF6167 0.14 -0.4 72,560 + GFF6167 0.14 -2.2 72,560 + GFF6167 0.14 -0.7 72,560 + GFF6167 0.14 -0.0 72,561 - GFF6167 0.14 -2.2 72,561 - GFF6167 0.14 -2.3 72,582 - GFF6167 0.16 -2.4 72,743 + GFF6167 0.32 -0.9 72,767 + GFF6167 0.34 +0.3 72,767 + GFF6167 0.34 +0.0 72,767 + GFF6167 0.34 -0.9 72,767 + GFF6167 0.34 +0.3 72,767 + GFF6167 0.34 -1.3 72,977 + GFF6167 0.55 -0.3 72,978 - GFF6167 0.55 -0.1 72,978 - GFF6167 0.55 -1.5 73,058 + GFF6167 0.63 -0.4 73,059 - GFF6167 0.63 -2.8 73,059 - GFF6167 0.63 +0.9 73,088 + GFF6167 0.66 +1.1 73,145 + GFF6167 0.72 -1.0 73,145 + GFF6167 0.72 +0.3 73,322 + GFF6167 0.90 -0.8 73,323 - GFF6167 0.90 -3.0 73,361 + +2.8 73,362 - +2.2 73,424 + -1.0 73,424 + -2.1 73,424 + -1.6 73,424 + -1.2 73,424 + -0.9 73,424 + +1.3 73,424 + -2.1 73,424 + -3.6 73,424 + +0.4 73,424 + +0.2 73,424 + -2.8 73,425 - -0.7 73,425 - -1.2 73,425 - +2.2 73,637 - GFF6168 0.51 -2.8 73,637 - GFF6168 0.51 -1.3 73,908 + GFF6169 0.33 +1.2 73,908 + GFF6169 0.33 -1.5 73,908 + GFF6169 0.33 -1.4 73,909 - GFF6169 0.33 -0.9 73,909 - GFF6169 0.33 -2.4 73,909 - GFF6169 0.33 -1.8 73,909 - GFF6169 0.33 +2.1 73,909 - GFF6169 0.33 -0.6 73,909 - GFF6169 0.33 +3.4 73,965 + GFF6169 0.53 -0.1 73,965 + GFF6169 0.53 -0.0 73,965 + GFF6169 0.53 +0.2 73,965 + GFF6169 0.53 +0.6 73,965 + GFF6169 0.53 -0.4 73,965 + GFF6169 0.53 -1.6 73,965 + GFF6169 0.53 +0.0 73,965 + GFF6169 0.53 +1.4 73,965 + GFF6169 0.53 +0.7 73,966 - GFF6169 0.53 +0.7 73,966 - GFF6169 0.53 +2.8 73,966 - GFF6169 0.53 +1.7 73,966 - GFF6169 0.53 +1.9 74,294 - GFF6170 0.41 -1.7 74,378 + GFF6170 0.58 -1.5 74,378 + GFF6170 0.58 +0.9 74,379 - GFF6170 0.58 -1.5 74,379 - GFF6170 0.58 +0.9 74,379 - GFF6170 0.58 -0.6 74,379 - GFF6170 0.58 +0.7 74,379 - GFF6170 0.58 -2.2 74,662 + -0.2
Or see this region's nucleotide sequence