Strain Fitness in Variovorax sp. SCN45 around GFF6151

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6150 and GFF6151 are separated by 105 nucleotidesGFF6151 and GFF6152 are separated by 92 nucleotidesGFF6152 and GFF6153 are separated by 9 nucleotides GFF6150 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 54,981 to 56,336 GFF6150 GFF6151 - Transcriptional regulator, LysR family, at 56,442 to 57,404 GFF6151 GFF6152 - hypothetical protein, at 57,497 to 57,874 GFF6152 GFF6153 - Transcriptional activator of acetoin/glycerol metabolism, at 57,884 to 59,026 GFF6153 Position (kb) 56 57 58Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 55.606 kb on + strand, within GFF6150at 55.852 kb on + strand, within GFF6150at 55.853 kb on - strand, within GFF6150at 55.853 kb on - strand, within GFF6150at 55.853 kb on - strand, within GFF6150at 55.987 kb on + strand, within GFF6150at 55.987 kb on + strand, within GFF6150at 55.987 kb on + strand, within GFF6150at 55.987 kb on + strand, within GFF6150at 55.987 kb on + strand, within GFF6150at 55.987 kb on + strand, within GFF6150at 55.988 kb on - strand, within GFF6150at 55.988 kb on - strand, within GFF6150at 55.988 kb on - strand, within GFF6150at 55.988 kb on - strand, within GFF6150at 55.988 kb on - strand, within GFF6150at 55.988 kb on - strand, within GFF6150at 55.988 kb on - strand, within GFF6150at 55.988 kb on - strand, within GFF6150at 55.988 kb on - strand, within GFF6150at 56.071 kb on + strand, within GFF6150at 56.071 kb on + strand, within GFF6150at 56.194 kb on + strand, within GFF6150at 56.194 kb on + strand, within GFF6150at 56.195 kb on - strand, within GFF6150at 56.195 kb on - strand, within GFF6150at 56.255 kb on - strandat 56.712 kb on + strand, within GFF6151at 56.712 kb on + strand, within GFF6151at 56.712 kb on + strand, within GFF6151at 56.713 kb on - strand, within GFF6151at 56.997 kb on + strand, within GFF6151at 56.997 kb on + strand, within GFF6151at 56.997 kb on + strand, within GFF6151at 56.997 kb on + strand, within GFF6151at 56.997 kb on + strand, within GFF6151at 56.997 kb on + strand, within GFF6151at 56.998 kb on - strand, within GFF6151at 56.998 kb on - strand, within GFF6151at 56.998 kb on - strand, within GFF6151at 57.031 kb on - strand, within GFF6151at 57.121 kb on - strand, within GFF6151at 57.306 kb on + strand, within GFF6151at 57.306 kb on + strand, within GFF6151at 57.306 kb on + strand, within GFF6151at 57.306 kb on + strand, within GFF6151at 57.306 kb on + strand, within GFF6151at 57.307 kb on - strand, within GFF6151at 57.307 kb on - strand, within GFF6151at 57.307 kb on - strand, within GFF6151at 57.307 kb on - strand, within GFF6151at 57.307 kb on - strand, within GFF6151at 57.539 kb on + strand, within GFF6152at 57.539 kb on + strand, within GFF6152at 57.539 kb on + strand, within GFF6152at 57.539 kb on + strand, within GFF6152at 57.539 kb on + strand, within GFF6152at 57.539 kb on + strand, within GFF6152at 57.539 kb on + strand, within GFF6152at 57.539 kb on + strand, within GFF6152at 57.540 kb on - strand, within GFF6152at 57.540 kb on - strand, within GFF6152at 57.617 kb on + strand, within GFF6152at 57.618 kb on - strand, within GFF6152at 57.618 kb on - strand, within GFF6152at 57.618 kb on - strand, within GFF6152at 57.618 kb on - strand, within GFF6152at 57.878 kb on + strandat 57.878 kb on + strandat 57.879 kb on - strandat 57.879 kb on - strandat 57.879 kb on - strandat 57.928 kb on - strandat 58.269 kb on + strand, within GFF6153at 58.269 kb on + strand, within GFF6153at 58.269 kb on + strand, within GFF6153at 58.269 kb on + strand, within GFF6153at 58.269 kb on + strand, within GFF6153at 58.270 kb on - strand, within GFF6153at 58.270 kb on - strand, within GFF6153

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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55,606 + GFF6150 0.46 -1.3
55,852 + GFF6150 0.64 -0.4
55,853 - GFF6150 0.64 -3.8
55,853 - GFF6150 0.64 -2.8
55,853 - GFF6150 0.64 +0.4
55,987 + GFF6150 0.74 -3.2
55,987 + GFF6150 0.74 -1.4
55,987 + GFF6150 0.74 +0.3
55,987 + GFF6150 0.74 -1.3
55,987 + GFF6150 0.74 -2.5
55,987 + GFF6150 0.74 -3.0
55,988 - GFF6150 0.74 -2.2
55,988 - GFF6150 0.74 -2.4
55,988 - GFF6150 0.74 -4.5
55,988 - GFF6150 0.74 -3.4
55,988 - GFF6150 0.74 -2.1
55,988 - GFF6150 0.74 -2.2
55,988 - GFF6150 0.74 -2.7
55,988 - GFF6150 0.74 -0.4
55,988 - GFF6150 0.74 -1.7
56,071 + GFF6150 0.80 -1.4
56,071 + GFF6150 0.80 -1.6
56,194 + GFF6150 0.89 -1.9
56,194 + GFF6150 0.89 -4.0
56,195 - GFF6150 0.90 -3.6
56,195 - GFF6150 0.90 -3.8
56,255 - -1.3
56,712 + GFF6151 0.28 -1.7
56,712 + GFF6151 0.28 -3.1
56,712 + GFF6151 0.28 -0.1
56,713 - GFF6151 0.28 -3.0
56,997 + GFF6151 0.58 -1.2
56,997 + GFF6151 0.58 -3.0
56,997 + GFF6151 0.58 -2.2
56,997 + GFF6151 0.58 -1.7
56,997 + GFF6151 0.58 -1.1
56,997 + GFF6151 0.58 -2.7
56,998 - GFF6151 0.58 -0.7
56,998 - GFF6151 0.58 -2.6
56,998 - GFF6151 0.58 -4.3
57,031 - GFF6151 0.61 -0.4
57,121 - GFF6151 0.71 -3.7
57,306 + GFF6151 0.90 -2.4
57,306 + GFF6151 0.90 -2.6
57,306 + GFF6151 0.90 -1.7
57,306 + GFF6151 0.90 +0.2
57,306 + GFF6151 0.90 +0.9
57,307 - GFF6151 0.90 -3.2
57,307 - GFF6151 0.90 -3.8
57,307 - GFF6151 0.90 -1.3
57,307 - GFF6151 0.90 -2.1
57,307 - GFF6151 0.90 +0.3
57,539 + GFF6152 0.11 -1.3
57,539 + GFF6152 0.11 +0.3
57,539 + GFF6152 0.11 +1.0
57,539 + GFF6152 0.11 -0.5
57,539 + GFF6152 0.11 -1.8
57,539 + GFF6152 0.11 -3.0
57,539 + GFF6152 0.11 -0.7
57,539 + GFF6152 0.11 +2.4
57,540 - GFF6152 0.11 +0.2
57,540 - GFF6152 0.11 -1.3
57,617 + GFF6152 0.32 +0.5
57,618 - GFF6152 0.32 -0.8
57,618 - GFF6152 0.32 +0.2
57,618 - GFF6152 0.32 +0.9
57,618 - GFF6152 0.32 +1.9
57,878 + -1.7
57,878 + -2.1
57,879 - -2.8
57,879 - -0.8
57,879 - +0.3
57,928 - +2.0
58,269 + GFF6153 0.34 +2.2
58,269 + GFF6153 0.34 -0.0
58,269 + GFF6153 0.34 +0.8
58,269 + GFF6153 0.34 +2.0
58,269 + GFF6153 0.34 +1.1
58,270 - GFF6153 0.34 +1.0
58,270 - GFF6153 0.34 -1.9

Or see this region's nucleotide sequence