Strain Fitness in Variovorax sp. SCN45 around GFF6127

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6126 and GFF6127 are separated by 59 nucleotidesGFF6127 and GFF6128 are separated by 228 nucleotidesGFF6128 and GFF6129 overlap by 4 nucleotides GFF6126 - putative membrane protein, at 27,147 to 28,079 GFF6126 GFF6127 - Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit, at 28,139 to 29,281 GFF6127 GFF6128 - Exodeoxyribonuclease VII small subunit (EC 3.1.11.6), at 29,510 to 29,776 GFF6128 GFF6129 - (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10), at 29,773 to 30,696 GFF6129 Position (kb) 28 29 30Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 27.221 kb on + strandat 27.221 kb on + strandat 27.222 kb on - strandat 27.508 kb on + strand, within GFF6126at 27.565 kb on + strand, within GFF6126at 27.565 kb on + strand, within GFF6126at 27.565 kb on + strand, within GFF6126at 27.565 kb on + strand, within GFF6126at 27.565 kb on + strand, within GFF6126at 27.565 kb on + strand, within GFF6126at 27.565 kb on + strand, within GFF6126at 27.566 kb on - strand, within GFF6126at 27.566 kb on - strand, within GFF6126at 27.566 kb on - strand, within GFF6126at 27.566 kb on - strand, within GFF6126at 27.566 kb on - strand, within GFF6126at 27.566 kb on - strand, within GFF6126at 27.566 kb on - strand, within GFF6126at 27.566 kb on - strand, within GFF6126at 27.799 kb on + strand, within GFF6126at 27.799 kb on + strand, within GFF6126at 27.799 kb on + strand, within GFF6126at 27.799 kb on + strand, within GFF6126at 27.799 kb on + strand, within GFF6126at 27.800 kb on - strand, within GFF6126at 27.800 kb on - strand, within GFF6126at 27.800 kb on - strand, within GFF6126at 27.800 kb on - strand, within GFF6126at 27.800 kb on - strand, within GFF6126at 27.800 kb on - strand, within GFF6126at 27.844 kb on + strand, within GFF6126at 27.844 kb on + strand, within GFF6126at 27.845 kb on - strand, within GFF6126at 27.845 kb on - strand, within GFF6126at 28.168 kb on - strandat 28.168 kb on - strandat 28.308 kb on + strand, within GFF6127at 28.309 kb on - strand, within GFF6127at 28.309 kb on - strand, within GFF6127at 28.464 kb on + strand, within GFF6127at 28.467 kb on + strand, within GFF6127at 28.467 kb on + strand, within GFF6127at 28.467 kb on + strand, within GFF6127at 28.467 kb on + strand, within GFF6127at 28.467 kb on + strand, within GFF6127at 28.467 kb on + strand, within GFF6127at 28.468 kb on - strand, within GFF6127at 28.468 kb on - strand, within GFF6127at 28.468 kb on - strand, within GFF6127at 28.468 kb on - strand, within GFF6127at 28.468 kb on - strand, within GFF6127at 28.468 kb on - strand, within GFF6127at 28.468 kb on - strand, within GFF6127at 28.488 kb on + strand, within GFF6127at 28.512 kb on + strand, within GFF6127at 28.512 kb on + strand, within GFF6127at 28.542 kb on + strand, within GFF6127at 28.542 kb on + strand, within GFF6127at 28.543 kb on - strand, within GFF6127at 28.599 kb on + strand, within GFF6127at 28.599 kb on + strand, within GFF6127at 28.689 kb on + strand, within GFF6127at 28.690 kb on - strand, within GFF6127at 28.690 kb on - strand, within GFF6127at 28.690 kb on - strand, within GFF6127at 28.716 kb on + strand, within GFF6127at 28.716 kb on + strand, within GFF6127at 28.716 kb on + strand, within GFF6127at 28.716 kb on + strand, within GFF6127at 28.716 kb on + strand, within GFF6127at 28.716 kb on + strand, within GFF6127at 28.716 kb on + strand, within GFF6127at 28.717 kb on - strand, within GFF6127at 28.717 kb on - strand, within GFF6127at 28.717 kb on - strand, within GFF6127at 28.717 kb on - strand, within GFF6127at 28.752 kb on + strand, within GFF6127at 28.753 kb on - strand, within GFF6127at 28.869 kb on + strand, within GFF6127at 28.870 kb on - strand, within GFF6127at 28.953 kb on + strand, within GFF6127at 28.953 kb on + strand, within GFF6127at 28.954 kb on - strand, within GFF6127at 28.954 kb on - strand, within GFF6127at 29.163 kb on + strand, within GFF6127at 29.164 kb on - strand, within GFF6127at 29.164 kb on - strand, within GFF6127at 29.205 kb on + strandat 29.205 kb on + strandat 29.205 kb on + strandat 29.205 kb on + strandat 29.205 kb on + strandat 29.206 kb on - strandat 29.206 kb on - strandat 29.270 kb on + strandat 29.270 kb on + strandat 29.271 kb on - strandat 29.271 kb on - strandat 29.400 kb on + strandat 29.401 kb on - strandat 29.478 kb on - strandat 29.478 kb on - strandat 29.561 kb on - strand, within GFF6128at 29.582 kb on + strand, within GFF6128at 29.666 kb on + strand, within GFF6128at 29.666 kb on + strand, within GFF6128at 29.667 kb on - strand, within GFF6128

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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27,221 + +0.6
27,221 + +3.5
27,222 - -0.4
27,508 + GFF6126 0.39 -0.9
27,565 + GFF6126 0.45 -1.7
27,565 + GFF6126 0.45 +0.7
27,565 + GFF6126 0.45 -4.0
27,565 + GFF6126 0.45 +0.1
27,565 + GFF6126 0.45 -1.7
27,565 + GFF6126 0.45 +0.9
27,565 + GFF6126 0.45 -2.8
27,566 - GFF6126 0.45 -1.4
27,566 - GFF6126 0.45 -0.5
27,566 - GFF6126 0.45 +1.5
27,566 - GFF6126 0.45 +0.2
27,566 - GFF6126 0.45 -3.4
27,566 - GFF6126 0.45 -3.4
27,566 - GFF6126 0.45 +0.8
27,566 - GFF6126 0.45 +0.8
27,799 + GFF6126 0.70 -1.1
27,799 + GFF6126 0.70 +1.5
27,799 + GFF6126 0.70 -1.9
27,799 + GFF6126 0.70 -3.8
27,799 + GFF6126 0.70 +0.1
27,800 - GFF6126 0.70 +0.7
27,800 - GFF6126 0.70 +1.6
27,800 - GFF6126 0.70 -0.9
27,800 - GFF6126 0.70 -0.4
27,800 - GFF6126 0.70 -0.1
27,800 - GFF6126 0.70 +1.9
27,844 + GFF6126 0.75 +2.4
27,844 + GFF6126 0.75 -0.1
27,845 - GFF6126 0.75 +0.4
27,845 - GFF6126 0.75 -0.2
28,168 - -2.5
28,168 - -2.8
28,308 + GFF6127 0.15 -4.0
28,309 - GFF6127 0.15 -2.5
28,309 - GFF6127 0.15 -2.4
28,464 + GFF6127 0.28 -1.1
28,467 + GFF6127 0.29 -0.7
28,467 + GFF6127 0.29 +0.3
28,467 + GFF6127 0.29 -3.8
28,467 + GFF6127 0.29 -3.0
28,467 + GFF6127 0.29 -2.0
28,467 + GFF6127 0.29 -0.7
28,468 - GFF6127 0.29 -0.7
28,468 - GFF6127 0.29 -2.2
28,468 - GFF6127 0.29 -4.7
28,468 - GFF6127 0.29 -2.4
28,468 - GFF6127 0.29 -1.1
28,468 - GFF6127 0.29 -4.0
28,468 - GFF6127 0.29 -2.2
28,488 + GFF6127 0.31 -3.2
28,512 + GFF6127 0.33 -3.5
28,512 + GFF6127 0.33 -3.1
28,542 + GFF6127 0.35 -1.3
28,542 + GFF6127 0.35 -1.1
28,543 - GFF6127 0.35 -2.2
28,599 + GFF6127 0.40 -0.1
28,599 + GFF6127 0.40 -3.2
28,689 + GFF6127 0.48 -2.5
28,690 - GFF6127 0.48 -2.7
28,690 - GFF6127 0.48 -2.4
28,690 - GFF6127 0.48 -3.0
28,716 + GFF6127 0.50 -3.2
28,716 + GFF6127 0.50 -0.5
28,716 + GFF6127 0.50 -2.4
28,716 + GFF6127 0.50 +0.6
28,716 + GFF6127 0.50 -2.1
28,716 + GFF6127 0.50 -0.1
28,716 + GFF6127 0.50 -0.2
28,717 - GFF6127 0.51 -3.2
28,717 - GFF6127 0.51 -3.6
28,717 - GFF6127 0.51 -1.7
28,717 - GFF6127 0.51 -4.0
28,752 + GFF6127 0.54 -1.4
28,753 - GFF6127 0.54 -2.1
28,869 + GFF6127 0.64 -3.1
28,870 - GFF6127 0.64 -3.9
28,953 + GFF6127 0.71 -0.9
28,953 + GFF6127 0.71 -2.3
28,954 - GFF6127 0.71 -0.1
28,954 - GFF6127 0.71 -1.1
29,163 + GFF6127 0.90 -1.7
29,164 - GFF6127 0.90 +1.6
29,164 - GFF6127 0.90 -2.0
29,205 + -1.8
29,205 + -3.7
29,205 + -1.3
29,205 + -0.0
29,205 + -2.4
29,206 - -1.9
29,206 - -2.4
29,270 + -0.0
29,270 + -1.6
29,271 - +1.1
29,271 - -1.4
29,400 + +0.9
29,401 - +1.2
29,478 - +0.1
29,478 - -0.2
29,561 - GFF6128 0.19 -0.4
29,582 + GFF6128 0.27 -0.7
29,666 + GFF6128 0.58 -1.4
29,666 + GFF6128 0.58 +1.9
29,667 - GFF6128 0.59 -0.4

Or see this region's nucleotide sequence