Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6106 and GFF6107 are separated by 120 nucleotides GFF6107 and GFF6108 are separated by 111 nucleotides GFF6108 and GFF6109 are separated by 37 nucleotides GFF6109 and GFF6110 are separated by 21 nucleotides
GFF6106 - Dienelactone hydrolase family protein, at 5,740 to 6,636
GFF6106
GFF6107 - Zinc transporter, ZIP family, at 6,757 to 7,647
GFF6107
GFF6108 - hypothetical protein, at 7,759 to 7,971
GFF6108
GFF6109 - FIG00986406: hypothetical protein, at 8,009 to 8,548
GFF6109
GFF6110 - N-acyl-D-amino-acid deacylase (EC 3.5.1.81), at 8,570 to 10,033
GFF6110
Position (kb) 6
7
8 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 5.848 kb on + strand, within GFF6106 at 5.848 kb on + strand, within GFF6106 at 5.848 kb on + strand, within GFF6106 at 5.929 kb on + strand, within GFF6106 at 5.929 kb on + strand, within GFF6106 at 5.929 kb on + strand, within GFF6106 at 5.929 kb on + strand, within GFF6106 at 5.929 kb on + strand, within GFF6106 at 5.930 kb on - strand, within GFF6106 at 5.930 kb on - strand, within GFF6106 at 5.930 kb on - strand, within GFF6106 at 5.930 kb on - strand, within GFF6106 at 5.959 kb on + strand, within GFF6106 at 5.959 kb on + strand, within GFF6106 at 5.960 kb on - strand, within GFF6106 at 6.034 kb on + strand, within GFF6106 at 6.034 kb on + strand, within GFF6106 at 6.034 kb on + strand, within GFF6106 at 6.035 kb on - strand, within GFF6106 at 6.035 kb on - strand, within GFF6106 at 6.125 kb on - strand, within GFF6106 at 6.211 kb on + strand, within GFF6106 at 6.211 kb on + strand, within GFF6106 at 6.212 kb on - strand, within GFF6106 at 6.212 kb on - strand, within GFF6106 at 6.289 kb on + strand, within GFF6106 at 6.459 kb on + strand, within GFF6106 at 6.459 kb on + strand, within GFF6106 at 6.520 kb on + strand, within GFF6106 at 6.520 kb on + strand, within GFF6106 at 6.521 kb on - strand, within GFF6106 at 6.565 kb on + strand at 6.566 kb on - strand at 6.566 kb on - strand at 6.651 kb on - strand at 6.651 kb on - strand at 6.698 kb on + strand at 6.699 kb on - strand at 6.768 kb on - strand at 7.450 kb on + strand, within GFF6107 at 7.450 kb on + strand, within GFF6107 at 7.450 kb on + strand, within GFF6107 at 7.451 kb on - strand, within GFF6107 at 7.722 kb on + strand at 7.723 kb on - strand at 8.153 kb on + strand, within GFF6109 at 8.154 kb on - strand, within GFF6109 at 8.154 kb on - strand, within GFF6109 at 8.154 kb on - strand, within GFF6109 at 8.267 kb on + strand, within GFF6109 at 8.267 kb on + strand, within GFF6109 at 8.267 kb on + strand, within GFF6109 at 8.267 kb on + strand, within GFF6109 at 8.267 kb on + strand, within GFF6109 at 8.267 kb on + strand, within GFF6109 at 8.268 kb on - strand, within GFF6109 at 8.268 kb on - strand, within GFF6109 at 8.418 kb on + strand, within GFF6109 at 8.419 kb on - strand, within GFF6109 at 8.419 kb on - strand, within GFF6109 at 8.546 kb on + strand at 8.547 kb on - strand at 8.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 5,848 + GFF6106 0.12 +1.6 5,848 + GFF6106 0.12 -1.9 5,848 + GFF6106 0.12 +0.4 5,929 + GFF6106 0.21 +0.4 5,929 + GFF6106 0.21 +0.6 5,929 + GFF6106 0.21 -2.5 5,929 + GFF6106 0.21 +1.2 5,929 + GFF6106 0.21 +0.7 5,930 - GFF6106 0.21 +0.9 5,930 - GFF6106 0.21 -1.4 5,930 - GFF6106 0.21 +1.0 5,930 - GFF6106 0.21 +0.1 5,959 + GFF6106 0.24 +0.8 5,959 + GFF6106 0.24 +0.8 5,960 - GFF6106 0.25 -0.9 6,034 + GFF6106 0.33 -0.7 6,034 + GFF6106 0.33 -0.4 6,034 + GFF6106 0.33 +1.7 6,035 - GFF6106 0.33 +0.0 6,035 - GFF6106 0.33 -1.8 6,125 - GFF6106 0.43 -2.6 6,211 + GFF6106 0.53 -1.1 6,211 + GFF6106 0.53 +0.5 6,212 - GFF6106 0.53 -0.3 6,212 - GFF6106 0.53 -1.8 6,289 + GFF6106 0.61 +0.9 6,459 + GFF6106 0.80 -0.7 6,459 + GFF6106 0.80 +0.1 6,520 + GFF6106 0.87 +0.5 6,520 + GFF6106 0.87 -0.3 6,521 - GFF6106 0.87 +0.4 6,565 + +0.9 6,566 - +0.7 6,566 - -2.3 6,651 - -0.9 6,651 - +0.4 6,698 + -0.4 6,699 - -1.8 6,768 - -0.3 7,450 + GFF6107 0.78 -1.9 7,450 + GFF6107 0.78 -5.1 7,450 + GFF6107 0.78 -1.1 7,451 - GFF6107 0.78 -3.7 7,722 + -2.8 7,723 - -3.2 8,153 + GFF6109 0.27 +2.5 8,154 - GFF6109 0.27 -0.6 8,154 - GFF6109 0.27 +1.8 8,154 - GFF6109 0.27 -0.7 8,267 + GFF6109 0.48 -1.9 8,267 + GFF6109 0.48 +1.6 8,267 + GFF6109 0.48 -2.4 8,267 + GFF6109 0.48 -0.9 8,267 + GFF6109 0.48 +0.4 8,267 + GFF6109 0.48 -0.9 8,268 - GFF6109 0.48 -0.9 8,268 - GFF6109 0.48 +0.4 8,418 + GFF6109 0.76 +1.4 8,419 - GFF6109 0.76 -1.4 8,419 - GFF6109 0.76 -3.0 8,546 + +0.4 8,547 - +1.3 8,547 - +3.2
Or see this region's nucleotide sequence