Strain Fitness in Variovorax sp. SCN45 around GFF6077

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6075 and GFF6076 overlap by 4 nucleotidesGFF6076 and GFF6077 overlap by 1 nucleotidesGFF6077 and GFF6078 are separated by 39 nucleotides GFF6075 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 137,421 to 139,217 GFF6075 GFF6076 - Spermidine synthase-like protein, at 139,214 to 139,999 GFF6076 GFF6077 - G:T/U mismatch-specific uracil/thymine DNA-glycosylase (EC 3.2.2.27), at 139,999 to 140,532 GFF6077 GFF6078 - no description, at 140,572 to 141,393 GFF6078 Position (kb) 139 140 141Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 139.452 kb on + strand, within GFF6076at 139.453 kb on - strand, within GFF6076at 139.524 kb on + strand, within GFF6076at 139.524 kb on + strand, within GFF6076at 139.524 kb on + strand, within GFF6076at 139.525 kb on - strand, within GFF6076at 139.525 kb on - strand, within GFF6076at 139.569 kb on + strand, within GFF6076at 139.569 kb on + strand, within GFF6076at 139.570 kb on - strand, within GFF6076at 139.570 kb on - strand, within GFF6076at 139.860 kb on + strand, within GFF6076at 139.860 kb on + strand, within GFF6076at 139.860 kb on + strand, within GFF6076at 139.860 kb on + strand, within GFF6076at 139.861 kb on - strand, within GFF6076at 139.861 kb on - strand, within GFF6076at 139.861 kb on - strand, within GFF6076at 139.933 kb on - strandat 140.008 kb on + strandat 140.009 kb on - strandat 140.009 kb on - strandat 140.099 kb on + strand, within GFF6077at 140.100 kb on - strand, within GFF6077at 140.100 kb on - strand, within GFF6077at 140.261 kb on + strand, within GFF6077at 140.261 kb on + strand, within GFF6077at 140.261 kb on + strand, within GFF6077at 140.261 kb on + strand, within GFF6077at 140.261 kb on + strand, within GFF6077at 140.261 kb on + strand, within GFF6077at 140.261 kb on + strand, within GFF6077at 140.261 kb on + strand, within GFF6077at 140.262 kb on - strand, within GFF6077at 140.262 kb on - strand, within GFF6077at 140.262 kb on - strand, within GFF6077at 140.262 kb on - strand, within GFF6077at 140.262 kb on - strand, within GFF6077at 140.262 kb on - strand, within GFF6077at 140.262 kb on - strand, within GFF6077at 140.262 kb on - strand, within GFF6077at 140.262 kb on - strand, within GFF6077at 140.262 kb on - strand, within GFF6077at 140.262 kb on - strand, within GFF6077at 140.262 kb on - strand, within GFF6077at 140.315 kb on + strand, within GFF6077at 140.315 kb on + strand, within GFF6077at 140.315 kb on + strand, within GFF6077at 140.316 kb on - strand, within GFF6077at 140.316 kb on - strand, within GFF6077at 140.316 kb on - strand, within GFF6077at 140.316 kb on - strand, within GFF6077at 140.396 kb on + strand, within GFF6077at 140.396 kb on + strand, within GFF6077at 140.396 kb on + strand, within GFF6077at 140.396 kb on + strand, within GFF6077at 140.396 kb on + strand, within GFF6077at 140.396 kb on + strand, within GFF6077at 140.396 kb on + strand, within GFF6077at 140.396 kb on + strand, within GFF6077at 140.396 kb on + strand, within GFF6077at 140.397 kb on - strand, within GFF6077at 140.397 kb on - strand, within GFF6077at 140.397 kb on - strand, within GFF6077at 140.397 kb on - strand, within GFF6077at 140.397 kb on - strand, within GFF6077at 140.399 kb on + strand, within GFF6077at 140.399 kb on + strand, within GFF6077at 140.399 kb on + strand, within GFF6077at 140.399 kb on + strand, within GFF6077at 140.399 kb on + strand, within GFF6077at 140.399 kb on + strand, within GFF6077at 140.399 kb on + strand, within GFF6077at 140.399 kb on + strand, within GFF6077at 140.399 kb on + strand, within GFF6077at 140.400 kb on - strand, within GFF6077at 140.400 kb on - strand, within GFF6077at 140.400 kb on - strand, within GFF6077at 140.400 kb on - strand, within GFF6077at 140.400 kb on - strand, within GFF6077at 140.400 kb on - strand, within GFF6077at 140.400 kb on - strand, within GFF6077at 140.400 kb on - strand, within GFF6077at 140.400 kb on - strand, within GFF6077at 140.400 kb on - strand, within GFF6077at 140.400 kb on - strand, within GFF6077at 140.400 kb on - strand, within GFF6077at 140.449 kb on + strand, within GFF6077at 140.450 kb on - strand, within GFF6077at 140.450 kb on - strand, within GFF6077at 140.450 kb on - strand, within GFF6077at 140.585 kb on + strandat 140.585 kb on + strandat 140.585 kb on + strandat 140.585 kb on + strandat 140.585 kb on + strandat 140.586 kb on - strandat 140.586 kb on - strandat 140.586 kb on - strandat 140.586 kb on - strandat 140.586 kb on - strandat 140.586 kb on - strandat 140.675 kb on + strand, within GFF6078at 140.718 kb on - strand, within GFF6078at 140.768 kb on + strand, within GFF6078at 140.768 kb on + strand, within GFF6078at 140.768 kb on + strand, within GFF6078at 140.768 kb on + strand, within GFF6078at 140.768 kb on + strand, within GFF6078at 140.768 kb on + strand, within GFF6078at 140.768 kb on + strand, within GFF6078at 140.768 kb on + strand, within GFF6078at 140.768 kb on + strand, within GFF6078at 140.769 kb on - strand, within GFF6078at 140.769 kb on - strand, within GFF6078at 140.769 kb on - strand, within GFF6078at 140.769 kb on - strand, within GFF6078at 140.769 kb on - strand, within GFF6078at 140.769 kb on - strand, within GFF6078at 140.808 kb on + strand, within GFF6078at 140.867 kb on + strand, within GFF6078at 141.048 kb on - strand, within GFF6078at 141.057 kb on - strand, within GFF6078at 141.062 kb on + strand, within GFF6078at 141.062 kb on + strand, within GFF6078at 141.062 kb on + strand, within GFF6078at 141.062 kb on + strand, within GFF6078at 141.062 kb on + strand, within GFF6078at 141.062 kb on + strand, within GFF6078at 141.063 kb on - strand, within GFF6078at 141.063 kb on - strand, within GFF6078at 141.063 kb on - strand, within GFF6078at 141.063 kb on - strand, within GFF6078at 141.063 kb on - strand, within GFF6078at 141.063 kb on - strand, within GFF6078at 141.063 kb on - strand, within GFF6078at 141.063 kb on - strand, within GFF6078at 141.063 kb on - strand, within GFF6078at 141.063 kb on - strand, within GFF6078at 141.155 kb on + strand, within GFF6078at 141.155 kb on + strand, within GFF6078at 141.156 kb on - strand, within GFF6078at 141.275 kb on + strand, within GFF6078at 141.275 kb on + strand, within GFF6078at 141.276 kb on - strand, within GFF6078at 141.276 kb on - strand, within GFF6078at 141.276 kb on - strand, within GFF6078at 141.393 kb on + strandat 141.393 kb on + strandat 141.394 kb on - strandat 141.437 kb on + strandat 141.437 kb on + strandat 141.437 kb on + strandat 141.437 kb on + strandat 141.437 kb on + strandat 141.437 kb on + strandat 141.437 kb on + strandat 141.437 kb on + strandat 141.437 kb on + strandat 141.437 kb on + strandat 141.438 kb on - strandat 141.438 kb on - strandat 141.438 kb on - strandat 141.438 kb on - strandat 141.438 kb on - strandat 141.438 kb on - strandat 141.438 kb on - strandat 141.438 kb on - strandat 141.438 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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139,452 + GFF6076 0.30 -0.3
139,453 - GFF6076 0.30 -0.4
139,524 + GFF6076 0.39 -0.7
139,524 + GFF6076 0.39 -0.8
139,524 + GFF6076 0.39 -0.8
139,525 - GFF6076 0.40 +0.0
139,525 - GFF6076 0.40 -1.4
139,569 + GFF6076 0.45 -0.6
139,569 + GFF6076 0.45 +0.4
139,570 - GFF6076 0.45 +0.7
139,570 - GFF6076 0.45 -0.5
139,860 + GFF6076 0.82 +0.1
139,860 + GFF6076 0.82 -2.4
139,860 + GFF6076 0.82 -2.3
139,860 + GFF6076 0.82 -0.3
139,861 - GFF6076 0.82 -0.4
139,861 - GFF6076 0.82 -0.9
139,861 - GFF6076 0.82 -0.1
139,933 - -0.6
140,008 + +0.4
140,009 - -1.2
140,009 - -1.9
140,099 + GFF6077 0.19 -0.1
140,100 - GFF6077 0.19 -2.5
140,100 - GFF6077 0.19 -2.4
140,261 + GFF6077 0.49 +0.5
140,261 + GFF6077 0.49 -2.0
140,261 + GFF6077 0.49 -1.5
140,261 + GFF6077 0.49 -1.0
140,261 + GFF6077 0.49 +2.8
140,261 + GFF6077 0.49 +0.4
140,261 + GFF6077 0.49 +0.3
140,261 + GFF6077 0.49 +1.1
140,262 - GFF6077 0.49 -2.6
140,262 - GFF6077 0.49 -0.7
140,262 - GFF6077 0.49 -3.3
140,262 - GFF6077 0.49 -0.4
140,262 - GFF6077 0.49 -2.6
140,262 - GFF6077 0.49 -1.6
140,262 - GFF6077 0.49 -0.8
140,262 - GFF6077 0.49 +0.3
140,262 - GFF6077 0.49 +0.3
140,262 - GFF6077 0.49 -1.4
140,262 - GFF6077 0.49 -0.4
140,262 - GFF6077 0.49 -2.3
140,315 + GFF6077 0.59 +3.1
140,315 + GFF6077 0.59 +2.5
140,315 + GFF6077 0.59 -0.7
140,316 - GFF6077 0.59 +0.2
140,316 - GFF6077 0.59 -0.6
140,316 - GFF6077 0.59 -0.2
140,316 - GFF6077 0.59 +2.4
140,396 + GFF6077 0.74 +0.4
140,396 + GFF6077 0.74 +1.3
140,396 + GFF6077 0.74 -0.6
140,396 + GFF6077 0.74 -0.6
140,396 + GFF6077 0.74 -2.3
140,396 + GFF6077 0.74 +2.5
140,396 + GFF6077 0.74 +1.8
140,396 + GFF6077 0.74 -1.2
140,396 + GFF6077 0.74 -1.8
140,397 - GFF6077 0.75 +0.3
140,397 - GFF6077 0.75 +0.5
140,397 - GFF6077 0.75 +1.6
140,397 - GFF6077 0.75 -0.2
140,397 - GFF6077 0.75 -0.6
140,399 + GFF6077 0.75 -1.9
140,399 + GFF6077 0.75 +1.6
140,399 + GFF6077 0.75 -2.1
140,399 + GFF6077 0.75 +1.0
140,399 + GFF6077 0.75 -0.6
140,399 + GFF6077 0.75 -2.4
140,399 + GFF6077 0.75 +2.3
140,399 + GFF6077 0.75 -0.4
140,399 + GFF6077 0.75 -2.7
140,400 - GFF6077 0.75 +0.2
140,400 - GFF6077 0.75 +0.8
140,400 - GFF6077 0.75 -0.2
140,400 - GFF6077 0.75 -0.1
140,400 - GFF6077 0.75 -2.0
140,400 - GFF6077 0.75 +1.6
140,400 - GFF6077 0.75 -1.2
140,400 - GFF6077 0.75 +1.2
140,400 - GFF6077 0.75 -1.7
140,400 - GFF6077 0.75 +1.4
140,400 - GFF6077 0.75 +1.4
140,400 - GFF6077 0.75 -2.0
140,449 + GFF6077 0.84 -2.1
140,450 - GFF6077 0.84 -2.5
140,450 - GFF6077 0.84 -2.7
140,450 - GFF6077 0.84 -0.4
140,585 + -1.8
140,585 + -1.1
140,585 + -0.0
140,585 + +1.3
140,585 + -1.5
140,586 - +3.1
140,586 - +0.4
140,586 - +0.1
140,586 - -0.6
140,586 - -4.2
140,586 - +0.6
140,675 + GFF6078 0.13 -0.4
140,718 - GFF6078 0.18 +0.0
140,768 + GFF6078 0.24 +1.0
140,768 + GFF6078 0.24 -1.4
140,768 + GFF6078 0.24 +1.4
140,768 + GFF6078 0.24 -2.1
140,768 + GFF6078 0.24 +0.1
140,768 + GFF6078 0.24 -0.6
140,768 + GFF6078 0.24 -0.0
140,768 + GFF6078 0.24 +3.0
140,768 + GFF6078 0.24 -1.8
140,769 - GFF6078 0.24 -2.0
140,769 - GFF6078 0.24 -0.4
140,769 - GFF6078 0.24 +0.9
140,769 - GFF6078 0.24 +1.6
140,769 - GFF6078 0.24 -2.1
140,769 - GFF6078 0.24 -2.6
140,808 + GFF6078 0.29 -1.1
140,867 + GFF6078 0.36 +0.4
141,048 - GFF6078 0.58 -2.4
141,057 - GFF6078 0.59 -2.1
141,062 + GFF6078 0.60 -0.2
141,062 + GFF6078 0.60 -0.9
141,062 + GFF6078 0.60 -0.5
141,062 + GFF6078 0.60 +1.4
141,062 + GFF6078 0.60 -0.8
141,062 + GFF6078 0.60 -0.9
141,063 - GFF6078 0.60 +1.8
141,063 - GFF6078 0.60 -0.2
141,063 - GFF6078 0.60 -0.1
141,063 - GFF6078 0.60 -0.0
141,063 - GFF6078 0.60 -2.1
141,063 - GFF6078 0.60 -0.8
141,063 - GFF6078 0.60 -0.1
141,063 - GFF6078 0.60 +0.6
141,063 - GFF6078 0.60 -1.4
141,063 - GFF6078 0.60 -1.0
141,155 + GFF6078 0.71 -0.8
141,155 + GFF6078 0.71 +1.9
141,156 - GFF6078 0.71 +0.6
141,275 + GFF6078 0.86 -1.4
141,275 + GFF6078 0.86 -2.1
141,276 - GFF6078 0.86 -2.6
141,276 - GFF6078 0.86 +1.1
141,276 - GFF6078 0.86 -1.5
141,393 + -2.2
141,393 + +1.0
141,394 - -1.2
141,437 + -0.5
141,437 + -2.1
141,437 + -1.4
141,437 + -2.8
141,437 + +1.0
141,437 + -2.2
141,437 + -3.4
141,437 + +0.3
141,437 + -1.0
141,437 + -0.6
141,438 - -1.2
141,438 - -1.8
141,438 - +1.0
141,438 - +1.3
141,438 - -2.5
141,438 - +0.6
141,438 - -1.6
141,438 - -1.4
141,438 - -2.0

Or see this region's nucleotide sequence