Strain Fitness in Variovorax sp. SCN45 around GFF6028

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6027 and GFF6028 are separated by 76 nucleotidesGFF6028 and GFF6029 are separated by 28 nucleotides GFF6027 - Nucleoside-diphosphate-sugar epimerases, at 87,581 to 88,513 GFF6027 GFF6028 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like, at 88,590 to 89,654 GFF6028 GFF6029 - BUG/TctC family periplasmic protein, at 89,683 to 90,663 GFF6029 Position (kb) 88 89 90Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 87.604 kb on + strandat 87.605 kb on - strandat 87.756 kb on - strand, within GFF6027at 87.780 kb on + strand, within GFF6027at 87.780 kb on + strand, within GFF6027at 87.780 kb on + strand, within GFF6027at 87.780 kb on + strand, within GFF6027at 87.780 kb on + strand, within GFF6027at 87.780 kb on + strand, within GFF6027at 87.780 kb on + strand, within GFF6027at 87.781 kb on - strand, within GFF6027at 87.781 kb on - strand, within GFF6027at 87.886 kb on + strand, within GFF6027at 87.886 kb on + strand, within GFF6027at 87.887 kb on - strand, within GFF6027at 87.895 kb on + strand, within GFF6027at 87.895 kb on + strand, within GFF6027at 87.895 kb on + strand, within GFF6027at 87.896 kb on - strand, within GFF6027at 87.897 kb on + strand, within GFF6027at 87.897 kb on + strand, within GFF6027at 87.897 kb on + strand, within GFF6027at 87.897 kb on + strand, within GFF6027at 87.897 kb on + strand, within GFF6027at 87.897 kb on + strand, within GFF6027at 87.898 kb on - strand, within GFF6027at 87.898 kb on - strand, within GFF6027at 87.898 kb on - strand, within GFF6027at 87.898 kb on - strand, within GFF6027at 87.898 kb on - strand, within GFF6027at 87.898 kb on - strand, within GFF6027at 87.898 kb on - strand, within GFF6027at 87.898 kb on - strand, within GFF6027at 87.898 kb on - strand, within GFF6027at 87.898 kb on - strand, within GFF6027at 87.928 kb on + strand, within GFF6027at 87.978 kb on + strand, within GFF6027at 87.978 kb on + strand, within GFF6027at 87.978 kb on + strand, within GFF6027at 87.978 kb on + strand, within GFF6027at 87.978 kb on + strand, within GFF6027at 87.978 kb on + strand, within GFF6027at 87.978 kb on + strand, within GFF6027at 87.978 kb on + strand, within GFF6027at 87.978 kb on + strand, within GFF6027at 87.978 kb on + strand, within GFF6027at 87.978 kb on + strand, within GFF6027at 87.978 kb on + strand, within GFF6027at 87.978 kb on + strand, within GFF6027at 87.978 kb on + strand, within GFF6027at 87.979 kb on - strand, within GFF6027at 87.979 kb on - strand, within GFF6027at 87.979 kb on - strand, within GFF6027at 87.979 kb on - strand, within GFF6027at 87.979 kb on - strand, within GFF6027at 87.979 kb on - strand, within GFF6027at 87.979 kb on - strand, within GFF6027at 87.979 kb on - strand, within GFF6027at 87.979 kb on - strand, within GFF6027at 87.979 kb on - strand, within GFF6027at 87.979 kb on - strand, within GFF6027at 88.131 kb on + strand, within GFF6027at 88.131 kb on + strand, within GFF6027at 88.132 kb on - strand, within GFF6027at 88.132 kb on - strand, within GFF6027at 88.132 kb on - strand, within GFF6027at 88.152 kb on + strand, within GFF6027at 88.153 kb on - strand, within GFF6027at 88.153 kb on - strand, within GFF6027at 88.498 kb on + strandat 88.499 kb on - strandat 88.499 kb on - strandat 88.499 kb on - strandat 88.499 kb on - strandat 88.598 kb on + strandat 88.598 kb on + strandat 88.598 kb on + strandat 88.598 kb on + strandat 88.598 kb on + strandat 88.598 kb on + strandat 88.599 kb on - strandat 88.599 kb on - strandat 88.599 kb on - strandat 88.716 kb on + strand, within GFF6028at 89.022 kb on + strand, within GFF6028at 89.022 kb on + strand, within GFF6028at 89.023 kb on - strand, within GFF6028at 89.023 kb on - strand, within GFF6028at 89.023 kb on - strand, within GFF6028at 89.023 kb on - strand, within GFF6028at 89.061 kb on + strand, within GFF6028at 89.061 kb on + strand, within GFF6028at 89.062 kb on - strand, within GFF6028at 89.084 kb on + strand, within GFF6028at 89.084 kb on + strand, within GFF6028at 89.084 kb on + strand, within GFF6028at 89.338 kb on - strand, within GFF6028at 89.338 kb on - strand, within GFF6028at 89.338 kb on - strand, within GFF6028at 89.338 kb on - strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.367 kb on + strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.368 kb on - strand, within GFF6028at 89.383 kb on + strand, within GFF6028at 89.383 kb on + strand, within GFF6028at 89.384 kb on - strand, within GFF6028at 89.418 kb on + strand, within GFF6028at 89.418 kb on + strand, within GFF6028at 89.419 kb on - strand, within GFF6028at 89.529 kb on + strand, within GFF6028at 89.529 kb on + strand, within GFF6028at 89.529 kb on + strand, within GFF6028at 89.529 kb on + strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.530 kb on - strand, within GFF6028at 89.574 kb on + strandat 89.575 kb on - strandat 89.575 kb on - strandat 89.575 kb on - strandat 89.575 kb on - strandat 89.665 kb on - strandat 89.665 kb on - strandat 89.665 kb on - strandat 89.668 kb on + strandat 89.668 kb on + strandat 89.669 kb on - strandat 89.669 kb on - strandat 89.669 kb on - strandat 89.669 kb on - strandat 89.794 kb on + strand, within GFF6029at 89.992 kb on + strand, within GFF6029at 89.992 kb on + strand, within GFF6029at 89.992 kb on + strand, within GFF6029at 89.992 kb on + strand, within GFF6029at 89.993 kb on - strand, within GFF6029at 89.993 kb on - strand, within GFF6029at 90.128 kb on - strand, within GFF6029at 90.157 kb on + strand, within GFF6029at 90.158 kb on - strand, within GFF6029at 90.158 kb on - strand, within GFF6029at 90.158 kb on - strand, within GFF6029at 90.244 kb on + strand, within GFF6029at 90.244 kb on + strand, within GFF6029at 90.245 kb on - strand, within GFF6029at 90.245 kb on - strand, within GFF6029at 90.269 kb on + strand, within GFF6029at 90.269 kb on + strand, within GFF6029at 90.269 kb on + strand, within GFF6029at 90.269 kb on + strand, within GFF6029at 90.270 kb on - strand, within GFF6029at 90.270 kb on - strand, within GFF6029at 90.622 kb on + strandat 90.622 kb on + strandat 90.622 kb on + strandat 90.622 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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87,604 + +0.3
87,605 - -1.6
87,756 - GFF6027 0.19 +0.5
87,780 + GFF6027 0.21 -1.7
87,780 + GFF6027 0.21 +3.1
87,780 + GFF6027 0.21 -1.0
87,780 + GFF6027 0.21 -1.0
87,780 + GFF6027 0.21 +3.0
87,780 + GFF6027 0.21 +0.6
87,780 + GFF6027 0.21 -3.0
87,781 - GFF6027 0.21 -0.1
87,781 - GFF6027 0.21 -0.6
87,886 + GFF6027 0.33 -0.7
87,886 + GFF6027 0.33 -0.7
87,887 - GFF6027 0.33 +1.0
87,895 + GFF6027 0.34 -0.6
87,895 + GFF6027 0.34 -2.9
87,895 + GFF6027 0.34 -2.0
87,896 - GFF6027 0.34 -1.8
87,897 + GFF6027 0.34 +0.2
87,897 + GFF6027 0.34 -1.4
87,897 + GFF6027 0.34 -2.8
87,897 + GFF6027 0.34 +2.4
87,897 + GFF6027 0.34 -0.0
87,897 + GFF6027 0.34 +0.1
87,898 - GFF6027 0.34 +0.2
87,898 - GFF6027 0.34 +0.2
87,898 - GFF6027 0.34 +1.4
87,898 - GFF6027 0.34 +2.9
87,898 - GFF6027 0.34 -2.3
87,898 - GFF6027 0.34 -1.5
87,898 - GFF6027 0.34 +1.2
87,898 - GFF6027 0.34 -0.1
87,898 - GFF6027 0.34 -1.8
87,898 - GFF6027 0.34 +0.2
87,928 + GFF6027 0.37 -2.9
87,978 + GFF6027 0.43 +1.5
87,978 + GFF6027 0.43 +0.8
87,978 + GFF6027 0.43 -0.3
87,978 + GFF6027 0.43 -1.2
87,978 + GFF6027 0.43 -1.6
87,978 + GFF6027 0.43 -0.5
87,978 + GFF6027 0.43 +0.1
87,978 + GFF6027 0.43 +0.1
87,978 + GFF6027 0.43 -1.2
87,978 + GFF6027 0.43 -2.0
87,978 + GFF6027 0.43 -3.1
87,978 + GFF6027 0.43 -1.4
87,978 + GFF6027 0.43 -0.3
87,978 + GFF6027 0.43 -1.0
87,979 - GFF6027 0.43 +0.2
87,979 - GFF6027 0.43 -2.7
87,979 - GFF6027 0.43 -1.4
87,979 - GFF6027 0.43 -1.9
87,979 - GFF6027 0.43 -2.6
87,979 - GFF6027 0.43 -2.0
87,979 - GFF6027 0.43 +2.7
87,979 - GFF6027 0.43 +0.0
87,979 - GFF6027 0.43 +0.2
87,979 - GFF6027 0.43 +1.0
87,979 - GFF6027 0.43 +1.7
88,131 + GFF6027 0.59 +1.0
88,131 + GFF6027 0.59 -0.8
88,132 - GFF6027 0.59 +0.4
88,132 - GFF6027 0.59 -4.0
88,132 - GFF6027 0.59 -0.0
88,152 + GFF6027 0.61 -4.3
88,153 - GFF6027 0.61 -0.4
88,153 - GFF6027 0.61 +1.4
88,498 + -0.0
88,499 - +2.2
88,499 - -1.7
88,499 - -0.2
88,499 - -3.2
88,598 + -2.4
88,598 + -0.1
88,598 + -1.9
88,598 + +0.2
88,598 + +0.4
88,598 + -0.0
88,599 - +1.0
88,599 - -0.8
88,599 - -4.0
88,716 + GFF6028 0.12 -3.7
89,022 + GFF6028 0.41 -1.0
89,022 + GFF6028 0.41 -2.5
89,023 - GFF6028 0.41 -1.0
89,023 - GFF6028 0.41 +0.4
89,023 - GFF6028 0.41 +1.0
89,023 - GFF6028 0.41 -1.2
89,061 + GFF6028 0.44 -2.2
89,061 + GFF6028 0.44 -1.5
89,062 - GFF6028 0.44 -2.7
89,084 + GFF6028 0.46 -3.2
89,084 + GFF6028 0.46 -4.3
89,084 + GFF6028 0.46 -3.2
89,338 - GFF6028 0.70 -0.6
89,338 - GFF6028 0.70 -3.7
89,338 - GFF6028 0.70 -1.4
89,338 - GFF6028 0.70 -4.0
89,367 + GFF6028 0.73 -2.2
89,367 + GFF6028 0.73 -2.5
89,367 + GFF6028 0.73 -1.0
89,367 + GFF6028 0.73 -1.0
89,367 + GFF6028 0.73 -1.0
89,367 + GFF6028 0.73 -1.2
89,367 + GFF6028 0.73 -2.1
89,367 + GFF6028 0.73 -2.3
89,367 + GFF6028 0.73 -1.7
89,367 + GFF6028 0.73 -1.0
89,367 + GFF6028 0.73 -4.4
89,367 + GFF6028 0.73 -1.7
89,367 + GFF6028 0.73 -3.6
89,367 + GFF6028 0.73 -3.8
89,368 - GFF6028 0.73 -0.8
89,368 - GFF6028 0.73 -1.2
89,368 - GFF6028 0.73 -3.8
89,368 - GFF6028 0.73 -4.3
89,368 - GFF6028 0.73 -3.0
89,368 - GFF6028 0.73 -3.3
89,368 - GFF6028 0.73 +2.0
89,368 - GFF6028 0.73 -2.0
89,368 - GFF6028 0.73 -2.3
89,383 + GFF6028 0.74 -1.0
89,383 + GFF6028 0.74 -2.1
89,384 - GFF6028 0.75 -2.9
89,418 + GFF6028 0.78 -3.3
89,418 + GFF6028 0.78 -2.6
89,419 - GFF6028 0.78 -1.5
89,529 + GFF6028 0.88 -1.2
89,529 + GFF6028 0.88 -3.7
89,529 + GFF6028 0.88 +0.7
89,529 + GFF6028 0.88 +2.4
89,530 - GFF6028 0.88 -1.6
89,530 - GFF6028 0.88 -1.0
89,530 - GFF6028 0.88 -2.1
89,530 - GFF6028 0.88 -1.6
89,530 - GFF6028 0.88 -1.5
89,530 - GFF6028 0.88 -0.6
89,530 - GFF6028 0.88 -0.8
89,530 - GFF6028 0.88 -3.6
89,530 - GFF6028 0.88 -3.3
89,574 + -4.0
89,575 - +1.0
89,575 - -4.0
89,575 - -0.6
89,575 - -2.8
89,665 - -2.1
89,665 - +0.6
89,665 - -0.9
89,668 + +0.4
89,668 + -0.6
89,669 - -1.6
89,669 - -1.6
89,669 - -3.9
89,669 - +3.1
89,794 + GFF6029 0.11 -0.8
89,992 + GFF6029 0.31 -3.7
89,992 + GFF6029 0.31 +2.2
89,992 + GFF6029 0.31 +1.3
89,992 + GFF6029 0.31 -1.4
89,993 - GFF6029 0.32 +0.2
89,993 - GFF6029 0.32 +1.4
90,128 - GFF6029 0.45 -0.8
90,157 + GFF6029 0.48 +1.0
90,158 - GFF6029 0.48 -2.9
90,158 - GFF6029 0.48 +1.1
90,158 - GFF6029 0.48 +0.6
90,244 + GFF6029 0.57 -2.7
90,244 + GFF6029 0.57 -1.1
90,245 - GFF6029 0.57 -1.4
90,245 - GFF6029 0.57 -0.4
90,269 + GFF6029 0.60 +1.0
90,269 + GFF6029 0.60 -0.6
90,269 + GFF6029 0.60 -0.3
90,269 + GFF6029 0.60 +0.5
90,270 - GFF6029 0.60 +1.4
90,270 - GFF6029 0.60 +1.0
90,622 + +0.6
90,622 + +1.0
90,622 + -0.6
90,622 + +0.2

Or see this region's nucleotide sequence