Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5968 and GFF5969 are separated by 347 nucleotides GFF5969 and GFF5970 overlap by 4 nucleotides
GFF5968 - no description, at 22,824 to 23,717
GFF5968
GFF5969 - Transcriptional regulator, GntR family, at 24,065 to 24,745
GFF5969
GFF5970 - Uncharacterized MFS-type transporter, at 24,742 to 26,058
GFF5970
Position (kb) 24
25 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 23.200 kb on + strand, within GFF5968 at 23.200 kb on + strand, within GFF5968 at 23.201 kb on - strand, within GFF5968 at 23.201 kb on - strand, within GFF5968 at 23.201 kb on - strand, within GFF5968 at 23.407 kb on + strand, within GFF5968 at 23.407 kb on + strand, within GFF5968 at 23.410 kb on + strand, within GFF5968 at 23.410 kb on + strand, within GFF5968 at 23.410 kb on + strand, within GFF5968 at 23.410 kb on + strand, within GFF5968 at 23.410 kb on + strand, within GFF5968 at 23.411 kb on - strand, within GFF5968 at 23.411 kb on - strand, within GFF5968 at 23.411 kb on - strand, within GFF5968 at 23.411 kb on - strand, within GFF5968 at 23.411 kb on - strand, within GFF5968 at 23.411 kb on - strand, within GFF5968 at 23.628 kb on + strand at 23.628 kb on + strand at 23.628 kb on + strand at 23.628 kb on + strand at 23.628 kb on + strand at 23.628 kb on + strand at 23.629 kb on - strand at 23.629 kb on - strand at 23.629 kb on - strand at 23.629 kb on - strand at 23.821 kb on + strand at 23.821 kb on + strand at 23.832 kb on + strand at 23.867 kb on - strand at 24.052 kb on + strand at 24.052 kb on + strand at 24.052 kb on + strand at 24.053 kb on - strand at 24.053 kb on - strand at 24.053 kb on - strand at 24.053 kb on - strand at 24.053 kb on - strand at 24.053 kb on - strand at 24.278 kb on + strand, within GFF5969 at 24.278 kb on + strand, within GFF5969 at 24.278 kb on + strand, within GFF5969 at 24.278 kb on + strand, within GFF5969 at 24.278 kb on + strand, within GFF5969 at 24.278 kb on + strand, within GFF5969 at 24.278 kb on + strand, within GFF5969 at 24.278 kb on + strand, within GFF5969 at 24.278 kb on + strand, within GFF5969 at 24.278 kb on + strand, within GFF5969 at 24.278 kb on + strand, within GFF5969 at 24.278 kb on + strand, within GFF5969 at 24.278 kb on + strand, within GFF5969 at 24.279 kb on - strand, within GFF5969 at 24.279 kb on - strand, within GFF5969 at 24.279 kb on - strand, within GFF5969 at 24.279 kb on - strand, within GFF5969 at 24.279 kb on - strand, within GFF5969 at 24.279 kb on - strand, within GFF5969 at 24.279 kb on - strand, within GFF5969 at 24.279 kb on - strand, within GFF5969 at 24.279 kb on - strand, within GFF5969 at 24.279 kb on - strand, within GFF5969 at 24.279 kb on - strand, within GFF5969 at 24.279 kb on - strand, within GFF5969 at 24.279 kb on - strand, within GFF5969 at 24.279 kb on - strand, within GFF5969 at 24.279 kb on - strand, within GFF5969 at 24.279 kb on - strand, within GFF5969 at 24.279 kb on - strand, within GFF5969 at 24.279 kb on - strand, within GFF5969 at 24.279 kb on - strand, within GFF5969 at 24.279 kb on - strand, within GFF5969 at 24.510 kb on + strand, within GFF5969 at 24.510 kb on + strand, within GFF5969 at 24.510 kb on + strand, within GFF5969 at 24.510 kb on + strand, within GFF5969 at 24.525 kb on + strand, within GFF5969 at 24.525 kb on + strand, within GFF5969 at 24.526 kb on - strand, within GFF5969 at 24.526 kb on - strand, within GFF5969 at 24.526 kb on - strand, within GFF5969 at 24.572 kb on + strand, within GFF5969 at 24.572 kb on + strand, within GFF5969 at 24.572 kb on + strand, within GFF5969 at 24.573 kb on - strand, within GFF5969 at 24.573 kb on - strand, within GFF5969 at 24.573 kb on - strand, within GFF5969 at 24.783 kb on + strand at 24.783 kb on + strand at 24.783 kb on + strand at 24.784 kb on - strand at 24.784 kb on - strand at 24.784 kb on - strand at 24.784 kb on - strand at 24.784 kb on - strand at 24.784 kb on - strand at 24.784 kb on - strand at 24.963 kb on - strand, within GFF5970 at 25.273 kb on + strand, within GFF5970 at 25.273 kb on + strand, within GFF5970 at 25.273 kb on + strand, within GFF5970 at 25.273 kb on + strand, within GFF5970 at 25.273 kb on + strand, within GFF5970 at 25.274 kb on - strand, within GFF5970 at 25.274 kb on - strand, within GFF5970 at 25.274 kb on - strand, within GFF5970 at 25.274 kb on - strand, within GFF5970 at 25.318 kb on - strand, within GFF5970 at 25.531 kb on + strand, within GFF5970 at 25.531 kb on + strand, within GFF5970 at 25.532 kb on - strand, within GFF5970 at 25.532 kb on - strand, within GFF5970 at 25.532 kb on - strand, within GFF5970 at 25.532 kb on - strand, within GFF5970 at 25.597 kb on + strand, within GFF5970 at 25.597 kb on + strand, within GFF5970 at 25.598 kb on - strand, within GFF5970 at 25.598 kb on - strand, within GFF5970 at 25.598 kb on - strand, within GFF5970
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 23,200 + GFF5968 0.42 +0.5 23,200 + GFF5968 0.42 +0.4 23,201 - GFF5968 0.42 -0.6 23,201 - GFF5968 0.42 -0.7 23,201 - GFF5968 0.42 -0.6 23,407 + GFF5968 0.65 -1.7 23,407 + GFF5968 0.65 +0.4 23,410 + GFF5968 0.66 -0.0 23,410 + GFF5968 0.66 -0.4 23,410 + GFF5968 0.66 -1.0 23,410 + GFF5968 0.66 +1.0 23,410 + GFF5968 0.66 -0.8 23,411 - GFF5968 0.66 -1.6 23,411 - GFF5968 0.66 -0.0 23,411 - GFF5968 0.66 -1.8 23,411 - GFF5968 0.66 +1.2 23,411 - GFF5968 0.66 +0.9 23,411 - GFF5968 0.66 -0.4 23,628 + +0.5 23,628 + -0.6 23,628 + -1.2 23,628 + +1.5 23,628 + +1.4 23,628 + -2.6 23,629 - +2.4 23,629 - +1.6 23,629 - -2.4 23,629 - -2.1 23,821 + +0.9 23,821 + -0.4 23,832 + -0.0 23,867 - -1.1 24,052 + +1.5 24,052 + +2.0 24,052 + +0.9 24,053 - -3.1 24,053 - -0.6 24,053 - -0.8 24,053 - -0.8 24,053 - -0.6 24,053 - -1.0 24,278 + GFF5969 0.31 -0.2 24,278 + GFF5969 0.31 +1.5 24,278 + GFF5969 0.31 -2.4 24,278 + GFF5969 0.31 -3.0 24,278 + GFF5969 0.31 +1.2 24,278 + GFF5969 0.31 -1.4 24,278 + GFF5969 0.31 +0.9 24,278 + GFF5969 0.31 +0.1 24,278 + GFF5969 0.31 +1.0 24,278 + GFF5969 0.31 -0.0 24,278 + GFF5969 0.31 +0.3 24,278 + GFF5969 0.31 -0.4 24,278 + GFF5969 0.31 +0.2 24,279 - GFF5969 0.31 +1.1 24,279 - GFF5969 0.31 -2.6 24,279 - GFF5969 0.31 -2.8 24,279 - GFF5969 0.31 +1.7 24,279 - GFF5969 0.31 -3.5 24,279 - GFF5969 0.31 +0.6 24,279 - GFF5969 0.31 +0.4 24,279 - GFF5969 0.31 -0.4 24,279 - GFF5969 0.31 +0.8 24,279 - GFF5969 0.31 -0.4 24,279 - GFF5969 0.31 +1.7 24,279 - GFF5969 0.31 +0.2 24,279 - GFF5969 0.31 -2.3 24,279 - GFF5969 0.31 +0.4 24,279 - GFF5969 0.31 -1.4 24,279 - GFF5969 0.31 -1.8 24,279 - GFF5969 0.31 -0.1 24,279 - GFF5969 0.31 -0.6 24,279 - GFF5969 0.31 +1.0 24,279 - GFF5969 0.31 +1.0 24,510 + GFF5969 0.65 +2.2 24,510 + GFF5969 0.65 -0.1 24,510 + GFF5969 0.65 +0.1 24,510 + GFF5969 0.65 -2.0 24,525 + GFF5969 0.68 +0.4 24,525 + GFF5969 0.68 +0.2 24,526 - GFF5969 0.68 -0.2 24,526 - GFF5969 0.68 -2.4 24,526 - GFF5969 0.68 -1.2 24,572 + GFF5969 0.74 -0.2 24,572 + GFF5969 0.74 +0.7 24,572 + GFF5969 0.74 +1.1 24,573 - GFF5969 0.75 +0.9 24,573 - GFF5969 0.75 -0.2 24,573 - GFF5969 0.75 -0.3 24,783 + -2.6 24,783 + +1.0 24,783 + -2.1 24,784 - +0.4 24,784 - +2.0 24,784 - -0.0 24,784 - +1.1 24,784 - +1.7 24,784 - +0.6 24,784 - +1.1 24,963 - GFF5970 0.17 +1.3 25,273 + GFF5970 0.40 -2.4 25,273 + GFF5970 0.40 -1.1 25,273 + GFF5970 0.40 -0.7 25,273 + GFF5970 0.40 -2.2 25,273 + GFF5970 0.40 -0.4 25,274 - GFF5970 0.40 -1.2 25,274 - GFF5970 0.40 +0.6 25,274 - GFF5970 0.40 +1.1 25,274 - GFF5970 0.40 -0.7 25,318 - GFF5970 0.44 +1.6 25,531 + GFF5970 0.60 +0.5 25,531 + GFF5970 0.60 -0.4 25,532 - GFF5970 0.60 +1.6 25,532 - GFF5970 0.60 +0.5 25,532 - GFF5970 0.60 -0.0 25,532 - GFF5970 0.60 -2.6 25,597 + GFF5970 0.65 +1.0 25,597 + GFF5970 0.65 +1.3 25,598 - GFF5970 0.65 -1.8 25,598 - GFF5970 0.65 +0.3 25,598 - GFF5970 0.65 -0.8
Or see this region's nucleotide sequence