Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5939 and GFF5940 overlap by 8 nucleotides GFF5940 and GFF5941 are separated by 28 nucleotides GFF5941 and GFF5942 are separated by 49 nucleotides
GFF5939 - T6SS lysozyme-like component TssE, at 160,121 to 160,636
GFF5939
GFF5940 - T6SS associated component TagJ (ImpE), at 160,629 to 161,453
GFF5940
GFF5941 - hypothetical protein, at 161,482 to 162,039
GFF5941
GFF5942 - hypothetical protein, at 162,089 to 164,233
GFF5942
Position (kb) 161
162
163 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 160.957 kb on + strand, within GFF5940 at 160.958 kb on - strand, within GFF5940 at 160.960 kb on + strand, within GFF5940 at 160.960 kb on + strand, within GFF5940 at 160.960 kb on + strand, within GFF5940 at 160.961 kb on - strand, within GFF5940 at 161.239 kb on + strand, within GFF5940 at 161.240 kb on - strand, within GFF5940 at 161.240 kb on - strand, within GFF5940 at 161.567 kb on + strand, within GFF5941 at 161.988 kb on - strand at 162.255 kb on + strand at 162.255 kb on + strand at 162.609 kb on + strand, within GFF5942 at 162.609 kb on + strand, within GFF5942 at 162.609 kb on + strand, within GFF5942 at 162.610 kb on - strand, within GFF5942 at 162.610 kb on - strand, within GFF5942 at 162.814 kb on - strand, within GFF5942 at 162.814 kb on - strand, within GFF5942
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 160,957 + GFF5940 0.40 +0.2 160,958 - GFF5940 0.40 -0.7 160,960 + GFF5940 0.40 -2.5 160,960 + GFF5940 0.40 +0.9 160,960 + GFF5940 0.40 +0.3 160,961 - GFF5940 0.40 -0.6 161,239 + GFF5940 0.74 +2.3 161,240 - GFF5940 0.74 +0.4 161,240 - GFF5940 0.74 -0.8 161,567 + GFF5941 0.15 -1.9 161,988 - -3.1 162,255 + -1.5 162,255 + -2.5 162,609 + GFF5942 0.24 -0.2 162,609 + GFF5942 0.24 -1.1 162,609 + GFF5942 0.24 -2.2 162,610 - GFF5942 0.24 +0.1 162,610 - GFF5942 0.24 -1.5 162,814 - GFF5942 0.34 +1.2 162,814 - GFF5942 0.34 -2.3
Or see this region's nucleotide sequence