Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5842 and GFF5843 overlap by 4 nucleotides GFF5843 and GFF5844 overlap by 4 nucleotides
GFF5842 - ATP-dependent DNA helicase Rep, at 18,658 to 20,760
GFF5842
GFF5843 - hypothetical protein, at 20,757 to 21,236
GFF5843
GFF5844 - Phospholipase A1 (EC 3.1.1.32) (EC 3.1.1.4) @ Outer membrane phospholipase A, at 21,233 to 22,399
GFF5844
Position (kb) 20
21
22 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 20.967 kb on + strand, within GFF5843 at 20.968 kb on - strand, within GFF5843 at 20.968 kb on - strand, within GFF5843 at 21.567 kb on - strand, within GFF5844 at 21.728 kb on + strand, within GFF5844 at 21.729 kb on - strand, within GFF5844 at 21.833 kb on + strand, within GFF5844 at 21.834 kb on - strand, within GFF5844 at 21.834 kb on - strand, within GFF5844 at 21.835 kb on + strand, within GFF5844 at 21.835 kb on + strand, within GFF5844 at 21.835 kb on + strand, within GFF5844 at 21.836 kb on - strand, within GFF5844 at 21.836 kb on - strand, within GFF5844 at 21.836 kb on - strand, within GFF5844 at 21.836 kb on - strand, within GFF5844 at 21.836 kb on - strand, within GFF5844 at 21.917 kb on + strand, within GFF5844 at 21.917 kb on + strand, within GFF5844 at 21.917 kb on + strand, within GFF5844 at 21.917 kb on + strand, within GFF5844 at 21.917 kb on + strand, within GFF5844 at 21.917 kb on + strand, within GFF5844 at 21.917 kb on + strand, within GFF5844 at 21.917 kb on + strand, within GFF5844 at 21.917 kb on + strand, within GFF5844 at 21.917 kb on + strand, within GFF5844 at 21.917 kb on + strand, within GFF5844 at 21.917 kb on + strand, within GFF5844 at 21.917 kb on + strand, within GFF5844 at 21.917 kb on + strand, within GFF5844 at 21.917 kb on + strand, within GFF5844 at 21.917 kb on + strand, within GFF5844 at 21.917 kb on + strand, within GFF5844 at 21.917 kb on + strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.918 kb on - strand, within GFF5844 at 21.966 kb on - strand, within GFF5844 at 22.037 kb on + strand, within GFF5844 at 22.038 kb on - strand, within GFF5844 at 22.038 kb on - strand, within GFF5844 at 22.038 kb on - strand, within GFF5844 at 22.145 kb on + strand, within GFF5844 at 22.146 kb on - strand, within GFF5844 at 22.146 kb on - strand, within GFF5844 at 22.146 kb on - strand, within GFF5844
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 20,967 + GFF5843 0.44 -2.2 20,968 - GFF5843 0.44 -1.2 20,968 - GFF5843 0.44 -2.1 21,567 - GFF5844 0.29 -3.7 21,728 + GFF5844 0.42 +0.4 21,729 - GFF5844 0.43 -1.9 21,833 + GFF5844 0.51 +1.1 21,834 - GFF5844 0.51 -0.9 21,834 - GFF5844 0.51 -1.5 21,835 + GFF5844 0.52 -2.4 21,835 + GFF5844 0.52 -1.1 21,835 + GFF5844 0.52 -1.1 21,836 - GFF5844 0.52 -1.1 21,836 - GFF5844 0.52 +1.3 21,836 - GFF5844 0.52 -1.8 21,836 - GFF5844 0.52 -1.8 21,836 - GFF5844 0.52 -4.0 21,917 + GFF5844 0.59 -0.3 21,917 + GFF5844 0.59 -0.3 21,917 + GFF5844 0.59 -2.7 21,917 + GFF5844 0.59 +1.6 21,917 + GFF5844 0.59 +0.3 21,917 + GFF5844 0.59 -0.3 21,917 + GFF5844 0.59 -0.5 21,917 + GFF5844 0.59 +1.0 21,917 + GFF5844 0.59 -0.9 21,917 + GFF5844 0.59 -1.5 21,917 + GFF5844 0.59 +1.3 21,917 + GFF5844 0.59 +0.1 21,917 + GFF5844 0.59 +1.0 21,917 + GFF5844 0.59 +0.0 21,917 + GFF5844 0.59 +0.6 21,917 + GFF5844 0.59 -3.2 21,917 + GFF5844 0.59 -1.6 21,917 + GFF5844 0.59 -2.2 21,918 - GFF5844 0.59 +2.3 21,918 - GFF5844 0.59 -0.2 21,918 - GFF5844 0.59 +0.1 21,918 - GFF5844 0.59 -1.3 21,918 - GFF5844 0.59 +0.1 21,918 - GFF5844 0.59 -1.2 21,918 - GFF5844 0.59 +0.5 21,918 - GFF5844 0.59 -1.4 21,918 - GFF5844 0.59 +0.8 21,918 - GFF5844 0.59 +1.0 21,918 - GFF5844 0.59 -1.0 21,918 - GFF5844 0.59 +0.0 21,918 - GFF5844 0.59 +1.4 21,918 - GFF5844 0.59 -0.5 21,918 - GFF5844 0.59 +1.4 21,918 - GFF5844 0.59 +0.4 21,918 - GFF5844 0.59 -1.0 21,918 - GFF5844 0.59 +0.1 21,918 - GFF5844 0.59 -3.8 21,918 - GFF5844 0.59 -1.2 21,918 - GFF5844 0.59 +6.4 21,918 - GFF5844 0.59 -0.6 21,918 - GFF5844 0.59 +0.0 21,918 - GFF5844 0.59 +1.3 21,918 - GFF5844 0.59 -0.3 21,966 - GFF5844 0.63 -0.7 22,037 + GFF5844 0.69 -3.8 22,038 - GFF5844 0.69 +0.9 22,038 - GFF5844 0.69 +1.1 22,038 - GFF5844 0.69 -1.3 22,145 + GFF5844 0.78 -0.4 22,146 - GFF5844 0.78 +0.5 22,146 - GFF5844 0.78 +0.1 22,146 - GFF5844 0.78 -1.7
Or see this region's nucleotide sequence