Strain Fitness in Variovorax sp. SCN45 around GFF5838

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
15,630	+		GFF5838	0.28	-0.3
15,630	+		GFF5838	0.28	+5.4
15,630	+		GFF5838	0.28	+1.3
15,630	+		GFF5838	0.28	-0.9
15,630	+		GFF5838	0.28	-2.3
15,631	-		GFF5838	0.28	-2.5
15,822	+		GFF5838	0.49	-0.2
15,822	+		GFF5838	0.49	-1.6
15,822	+		GFF5838	0.49	-0.7
15,822	+		GFF5838	0.49	+0.1
15,822	+		GFF5838	0.49	+2.3
15,823	-		GFF5838	0.49	-0.5
15,823	-		GFF5838	0.49	-1.3
15,900	+		GFF5838	0.58	+2.2
15,900	+		GFF5838	0.58	-0.5
15,900	+		GFF5838	0.58	+1.5
15,900	+		GFF5838	0.58	-1.5
15,900	+		GFF5838	0.58	-0.7
15,960	+		GFF5838	0.64	-0.6
15,960	+		GFF5838	0.64	-0.5
15,960	+		GFF5838	0.64	+0.1
15,960	+		GFF5838	0.64	-1.3
15,960	+		GFF5838	0.64	+1.9
15,960	+		GFF5838	0.64	-1.5
15,960	+		GFF5838	0.64	+0.3
15,960	+		GFF5838	0.64	-0.6
15,960	+		GFF5838	0.64	+2.0
15,960	+		GFF5838	0.64	+1.1
15,960	+		GFF5838	0.64	+0.6
15,960	+		GFF5838	0.64	-0.7
15,960	+		GFF5838	0.64	-0.9
15,960	+		GFF5838	0.64	-2.2
15,960	+		GFF5838	0.64	-2.7
15,961	-		GFF5838	0.64	+0.7
15,961	-		GFF5838	0.64	-1.7
15,961	-		GFF5838	0.64	-0.5
15,961	-		GFF5838	0.64	-0.5
15,961	-		GFF5838	0.64	-0.6
15,961	-		GFF5838	0.64	-0.4
15,961	-		GFF5838	0.64	+0.7
15,961	-		GFF5838	0.64	+1.5
15,961	-		GFF5838	0.64	+1.1
15,961	-		GFF5838	0.64	-1.1
15,961	-		GFF5838	0.64	+3.3
15,961	-		GFF5838	0.64	+0.4
15,961	-		GFF5838	0.64	-0.2
15,961	-		GFF5838	0.64	+0.5
15,961	-		GFF5838	0.64	+0.7
15,961	-		GFF5838	0.64	-1.6
15,961	-		GFF5838	0.64	-2.9
15,961	-		GFF5838	0.64	-1.4
15,961	-		GFF5838	0.64	-0.9
15,961	-		GFF5838	0.64	-4.0
15,961	-		GFF5838	0.64	+0.1
15,961	-		GFF5838	0.64	-1.1
15,961	-		GFF5838	0.64	-2.6
15,961	-		GFF5838	0.64	+2.1
15,961	-		GFF5838	0.64	+0.4
15,966	+		GFF5838	0.65	-3.0
15,966	+		GFF5838	0.65	+1.1
15,966	+		GFF5838	0.65	+1.3
15,966	+		GFF5838	0.65	-3.9
15,967	-		GFF5838	0.65	+0.9
15,967	-		GFF5838	0.65	+2.2
15,967	-		GFF5838	0.65	-1.9
15,967	-		GFF5838	0.65	-0.4
15,967	-		GFF5838	0.65	+0.6
15,967	-		GFF5838	0.65	+0.3
15,972	+		GFF5838	0.65	-1.8
16,005	+		GFF5838	0.69	-2.5
16,005	+		GFF5838	0.69	+6.1
16,005	+		GFF5838	0.69	-0.9
16,005	+		GFF5838	0.69	+1.6
16,005	-		GFF5838	0.69	-1.4
16,006	-		GFF5838	0.69	+0.1
16,006	-		GFF5838	0.69	+1.3
16,006	-		GFF5838	0.69	+0.4
16,006	-		GFF5838	0.69	+0.9
16,006	-		GFF5838	0.69	-0.5
16,006	-		GFF5838	0.69	+2.1
16,006	-		GFF5838	0.69	-0.7
16,006	-		GFF5838	0.69	+2.9
16,006	-		GFF5838	0.69	+0.4
16,006	-		GFF5838	0.69	-1.3
16,065	+		GFF5838	0.76	+2.1
16,065	+		GFF5838	0.76	-1.7
16,065	+		GFF5838	0.76	-2.0
16,065	+		GFF5838	0.76	-2.2
16,066	-		GFF5838	0.76	-2.3
16,066	-		GFF5838	0.76	-0.2
16,066	-		GFF5838	0.76	-1.0
16,110	+		GFF5838	0.81	-0.9
16,110	+		GFF5838	0.81	-0.5
16,111	-		GFF5838	0.81	-2.6
16,113	+		GFF5838	0.81	-0.5
16,113	+		GFF5838	0.81	-1.1
16,113	+		GFF5838	0.81	-1.9
16,114	-		GFF5838	0.81	+0.5
16,114	-		GFF5838	0.81	-4.0
16,114	-		GFF5838	0.81	-1.2
16,114	-		GFF5838	0.81	-0.1
16,131	+		GFF5838	0.83	-0.2
16,131	+		GFF5838	0.83	-1.1
16,131	+		GFF5838	0.83	-0.3
16,131	+		GFF5838	0.83	+1.6
16,132	-		GFF5838	0.83	-0.9
16,132	-		GFF5838	0.83	-0.9
16,132	-		GFF5838	0.83	+0.1
16,132	-		GFF5838	0.83	+0.5
16,132	-		GFF5838	0.83	-1.1
16,132	-		GFF5838	0.83	-1.6
16,132	-		GFF5838	0.83	+0.1
16,200	+				-0.7
16,201	-				+0.3
16,201	-				+0.3
16,201	-				-0.5
16,201	-				-2.5
16,201	-				+1.1
16,236	+				+1.1
16,236	+				-1.5
16,236	+				+0.6
16,237	-				-0.1
16,237	-				+1.6
16,237	-				+2.1
16,311	+				+1.4
16,312	-				-0.9
16,312	-				-2.1
16,341	+		GFF5839	0.17	+0.5
16,342	-		GFF5839	0.17	+0.0
16,342	-		GFF5839	0.17	-0.5
16,342	-		GFF5839	0.17	-0.5
16,342	-		GFF5839	0.17	+2.3
16,505	+				+0.9
16,505	+				-2.1
16,505	+				+1.6
16,505	+				-1.5
16,506	-				-0.1
16,506	-				-0.9
16,506	-				-0.5
16,506	-				-0.3
16,506	-				-0.6
16,506	-				-0.2
16,506	-				+0.5
16,551	+				-2.3
16,551	+				+0.5
16,551	+				-0.2
16,551	+				-0.5
16,551	+				+0.5
16,552	-				+0.1
16,552	-				-1.7
16,552	-				-1.5
16,552	-				-0.9
16,552	-				-1.0
16,552	-				-2.1
16,552	-				+0.3
16,552	-				-1.2
16,552	-				+0.6
16,552	-				+1.0
16,602	-				-1.3
16,602	-				+0.1
16,626	-				+3.0
16,682	+				-3.6
16,682	+				-4.0
16,682	+				+0.4
16,683	-				+2.1
16,689	+				-0.7
16,690	-				+0.5
16,727	+				-0.2
16,727	+				-1.7
16,793	+				+0.8
16,793	+				-2.5
16,794	-				-3.4
16,794	-				-0.9
17,056	+		GFF5840	0.39	-1.6