Strain Fitness in Variovorax sp. SCN45 around GFF5674

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5673 and GFF5674 are separated by 79 nucleotidesGFF5674 and GFF5675 overlap by 1 nucleotidesGFF5675 and GFF5676 overlap by 4 nucleotides GFF5673 - Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-), at 47,179 to 48,495 GFF5673 GFF5674 - Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion, at 48,575 to 49,372 GFF5674 GFF5675 - Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-), at 49,372 to 49,779 GFF5675 GFF5676 - Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-), at 49,776 to 50,384 GFF5676 Position (kb) 48 49 50Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 47.627 kb on + strand, within GFF5673at 47.627 kb on + strand, within GFF5673at 47.627 kb on + strand, within GFF5673at 47.824 kb on + strand, within GFF5673at 48.065 kb on + strand, within GFF5673at 48.065 kb on + strand, within GFF5673at 48.065 kb on + strand, within GFF5673at 48.065 kb on + strand, within GFF5673at 48.065 kb on + strand, within GFF5673at 48.066 kb on - strand, within GFF5673at 48.066 kb on - strand, within GFF5673at 48.066 kb on - strand, within GFF5673at 48.066 kb on - strand, within GFF5673at 48.066 kb on - strand, within GFF5673at 48.066 kb on - strand, within GFF5673at 48.257 kb on + strand, within GFF5673at 48.257 kb on + strand, within GFF5673at 48.257 kb on + strand, within GFF5673at 48.258 kb on - strand, within GFF5673at 48.258 kb on - strand, within GFF5673at 48.425 kb on + strandat 48.425 kb on + strandat 48.681 kb on + strand, within GFF5674at 48.681 kb on + strand, within GFF5674at 48.681 kb on + strand, within GFF5674at 48.681 kb on + strand, within GFF5674at 48.682 kb on - strand, within GFF5674at 48.682 kb on - strand, within GFF5674at 48.682 kb on - strand, within GFF5674at 48.696 kb on + strand, within GFF5674at 48.697 kb on - strand, within GFF5674at 48.697 kb on - strand, within GFF5674at 48.810 kb on + strand, within GFF5674at 48.810 kb on + strand, within GFF5674at 48.810 kb on + strand, within GFF5674at 48.810 kb on + strand, within GFF5674at 48.810 kb on + strand, within GFF5674at 48.810 kb on + strand, within GFF5674at 48.811 kb on - strand, within GFF5674at 48.811 kb on - strand, within GFF5674at 48.811 kb on - strand, within GFF5674at 48.811 kb on - strand, within GFF5674at 48.811 kb on - strand, within GFF5674at 49.430 kb on + strand, within GFF5675at 49.430 kb on + strand, within GFF5675at 49.430 kb on + strand, within GFF5675at 49.430 kb on + strand, within GFF5675at 49.430 kb on + strand, within GFF5675at 49.430 kb on + strand, within GFF5675at 49.430 kb on + strand, within GFF5675at 49.430 kb on + strand, within GFF5675at 49.430 kb on + strand, within GFF5675at 49.430 kb on + strand, within GFF5675at 49.431 kb on - strand, within GFF5675at 49.431 kb on - strand, within GFF5675at 49.431 kb on - strand, within GFF5675at 49.431 kb on - strand, within GFF5675at 49.431 kb on - strand, within GFF5675at 49.431 kb on - strand, within GFF5675at 49.431 kb on - strand, within GFF5675at 49.431 kb on - strand, within GFF5675at 49.538 kb on + strand, within GFF5675at 49.538 kb on + strand, within GFF5675at 49.538 kb on + strand, within GFF5675at 49.538 kb on + strand, within GFF5675at 49.538 kb on + strand, within GFF5675at 49.538 kb on + strand, within GFF5675at 49.538 kb on + strand, within GFF5675at 49.539 kb on - strand, within GFF5675at 49.539 kb on - strand, within GFF5675at 49.539 kb on - strand, within GFF5675at 49.539 kb on - strand, within GFF5675at 49.539 kb on - strand, within GFF5675at 49.539 kb on - strand, within GFF5675at 49.539 kb on - strand, within GFF5675at 49.679 kb on + strand, within GFF5675at 49.679 kb on + strand, within GFF5675at 49.679 kb on + strand, within GFF5675at 49.679 kb on + strand, within GFF5675at 49.679 kb on + strand, within GFF5675at 49.679 kb on + strand, within GFF5675at 49.680 kb on - strand, within GFF5675at 49.680 kb on - strand, within GFF5675at 49.680 kb on - strand, within GFF5675at 49.680 kb on - strand, within GFF5675at 49.680 kb on - strand, within GFF5675at 49.680 kb on - strand, within GFF5675at 49.680 kb on - strand, within GFF5675at 49.680 kb on - strand, within GFF5675at 49.767 kb on + strandat 49.768 kb on - strandat 49.798 kb on + strandat 49.798 kb on + strandat 49.798 kb on + strandat 49.798 kb on + strandat 49.798 kb on + strandat 49.799 kb on - strandat 49.799 kb on - strandat 50.041 kb on + strand, within GFF5676at 50.041 kb on + strand, within GFF5676at 50.041 kb on + strand, within GFF5676at 50.041 kb on + strand, within GFF5676at 50.042 kb on - strand, within GFF5676at 50.042 kb on - strand, within GFF5676at 50.146 kb on + strand, within GFF5676at 50.146 kb on + strand, within GFF5676at 50.146 kb on + strand, within GFF5676at 50.146 kb on + strand, within GFF5676at 50.147 kb on - strand, within GFF5676at 50.147 kb on - strand, within GFF5676at 50.147 kb on - strand, within GFF5676at 50.147 kb on - strand, within GFF5676at 50.233 kb on + strand, within GFF5676at 50.233 kb on + strand, within GFF5676at 50.233 kb on + strand, within GFF5676at 50.234 kb on - strand, within GFF5676at 50.254 kb on + strand, within GFF5676at 50.254 kb on + strand, within GFF5676at 50.254 kb on + strand, within GFF5676at 50.254 kb on + strand, within GFF5676at 50.254 kb on + strand, within GFF5676at 50.255 kb on - strand, within GFF5676at 50.255 kb on - strand, within GFF5676at 50.255 kb on - strand, within GFF5676at 50.299 kb on + strand, within GFF5676at 50.299 kb on + strand, within GFF5676at 50.299 kb on + strand, within GFF5676at 50.300 kb on - strand, within GFF5676

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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47,627 + GFF5673 0.34 -3.4
47,627 + GFF5673 0.34 -2.7
47,627 + GFF5673 0.34 -0.4
47,824 + GFF5673 0.49 -2.4
48,065 + GFF5673 0.67 -2.0
48,065 + GFF5673 0.67 -0.7
48,065 + GFF5673 0.67 -1.8
48,065 + GFF5673 0.67 -4.5
48,065 + GFF5673 0.67 -3.2
48,066 - GFF5673 0.67 -2.1
48,066 - GFF5673 0.67 -2.8
48,066 - GFF5673 0.67 -1.3
48,066 - GFF5673 0.67 -2.3
48,066 - GFF5673 0.67 +1.3
48,066 - GFF5673 0.67 -1.8
48,257 + GFF5673 0.82 -2.7
48,257 + GFF5673 0.82 -0.3
48,257 + GFF5673 0.82 -1.8
48,258 - GFF5673 0.82 +1.2
48,258 - GFF5673 0.82 -1.4
48,425 + -2.6
48,425 + +0.4
48,681 + GFF5674 0.13 -0.2
48,681 + GFF5674 0.13 -1.4
48,681 + GFF5674 0.13 -0.6
48,681 + GFF5674 0.13 +0.4
48,682 - GFF5674 0.13 -1.2
48,682 - GFF5674 0.13 +0.2
48,682 - GFF5674 0.13 -0.8
48,696 + GFF5674 0.15 +0.4
48,697 - GFF5674 0.15 -1.0
48,697 - GFF5674 0.15 -0.4
48,810 + GFF5674 0.29 -0.1
48,810 + GFF5674 0.29 +0.4
48,810 + GFF5674 0.29 -0.0
48,810 + GFF5674 0.29 -2.7
48,810 + GFF5674 0.29 +1.9
48,810 + GFF5674 0.29 +2.3
48,811 - GFF5674 0.30 -1.0
48,811 - GFF5674 0.30 +0.0
48,811 - GFF5674 0.30 +2.6
48,811 - GFF5674 0.30 -0.4
48,811 - GFF5674 0.30 +0.1
49,430 + GFF5675 0.14 -3.7
49,430 + GFF5675 0.14 +0.4
49,430 + GFF5675 0.14 +1.0
49,430 + GFF5675 0.14 +1.1
49,430 + GFF5675 0.14 -3.0
49,430 + GFF5675 0.14 -1.2
49,430 + GFF5675 0.14 +1.0
49,430 + GFF5675 0.14 +1.6
49,430 + GFF5675 0.14 +0.7
49,430 + GFF5675 0.14 -0.5
49,431 - GFF5675 0.14 -0.6
49,431 - GFF5675 0.14 +0.5
49,431 - GFF5675 0.14 -2.4
49,431 - GFF5675 0.14 -2.2
49,431 - GFF5675 0.14 +2.6
49,431 - GFF5675 0.14 +1.4
49,431 - GFF5675 0.14 +1.3
49,431 - GFF5675 0.14 +0.5
49,538 + GFF5675 0.41 -1.8
49,538 + GFF5675 0.41 -0.8
49,538 + GFF5675 0.41 -2.1
49,538 + GFF5675 0.41 -3.1
49,538 + GFF5675 0.41 -2.1
49,538 + GFF5675 0.41 -2.5
49,538 + GFF5675 0.41 -2.7
49,539 - GFF5675 0.41 -0.6
49,539 - GFF5675 0.41 -4.4
49,539 - GFF5675 0.41 -3.6
49,539 - GFF5675 0.41 +2.0
49,539 - GFF5675 0.41 -0.4
49,539 - GFF5675 0.41 -0.2
49,539 - GFF5675 0.41 -0.0
49,679 + GFF5675 0.75 -1.1
49,679 + GFF5675 0.75 +2.0
49,679 + GFF5675 0.75 -3.0
49,679 + GFF5675 0.75 -0.8
49,679 + GFF5675 0.75 -3.7
49,679 + GFF5675 0.75 -4.4
49,680 - GFF5675 0.75 +4.0
49,680 - GFF5675 0.75 -2.2
49,680 - GFF5675 0.75 -1.6
49,680 - GFF5675 0.75 -0.4
49,680 - GFF5675 0.75 -2.9
49,680 - GFF5675 0.75 +0.4
49,680 - GFF5675 0.75 -0.8
49,680 - GFF5675 0.75 -1.2
49,767 + -2.9
49,768 - -0.0
49,798 + -1.8
49,798 + -3.0
49,798 + -3.9
49,798 + -2.1
49,798 + -2.0
49,799 - -4.4
49,799 - -0.7
50,041 + GFF5676 0.44 -2.2
50,041 + GFF5676 0.44 -3.1
50,041 + GFF5676 0.44 -3.0
50,041 + GFF5676 0.44 -3.0
50,042 - GFF5676 0.44 -0.0
50,042 - GFF5676 0.44 -1.3
50,146 + GFF5676 0.61 -0.6
50,146 + GFF5676 0.61 -0.4
50,146 + GFF5676 0.61 +0.2
50,146 + GFF5676 0.61 -1.7
50,147 - GFF5676 0.61 -0.0
50,147 - GFF5676 0.61 +1.5
50,147 - GFF5676 0.61 -1.6
50,147 - GFF5676 0.61 -3.3
50,233 + GFF5676 0.75 -5.2
50,233 + GFF5676 0.75 -3.5
50,233 + GFF5676 0.75 -1.1
50,234 - GFF5676 0.75 +0.7
50,254 + GFF5676 0.78 -3.9
50,254 + GFF5676 0.78 -3.5
50,254 + GFF5676 0.78 -0.4
50,254 + GFF5676 0.78 -2.2
50,254 + GFF5676 0.78 -3.0
50,255 - GFF5676 0.79 +0.4
50,255 - GFF5676 0.79 +0.2
50,255 - GFF5676 0.79 -1.5
50,299 + GFF5676 0.86 -2.0
50,299 + GFF5676 0.86 -2.9
50,299 + GFF5676 0.86 -2.0
50,300 - GFF5676 0.86 -2.3

Or see this region's nucleotide sequence