Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5668 and GFF5669 overlap by 4 nucleotides GFF5669 and GFF5670 overlap by 4 nucleotides GFF5670 and GFF5671 are separated by 10 nucleotides GFF5671 and GFF5672 are separated by 74 nucleotides
GFF5668 - Uncharacterized MFS-type transporter, at 43,891 to 45,402
GFF5668
GFF5669 - hypothetical protein, at 45,399 to 45,677
GFF5669
GFF5670 - Protein SlyX, at 45,674 to 45,865
GFF5670
GFF5671 - FIG01964566: Predicted membrane protein, hemolysin III homolog, at 45,876 to 46,562
GFF5671
GFF5672 - Dna binding response regulator PrrA (RegA), at 46,637 to 47,182
GFF5672
Position (kb)
45
46 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 44.716 kb on + strand, within GFF5668 at 44.716 kb on + strand, within GFF5668 at 44.716 kb on + strand, within GFF5668 at 44.716 kb on + strand, within GFF5668 at 44.717 kb on - strand, within GFF5668 at 44.717 kb on - strand, within GFF5668 at 44.717 kb on - strand, within GFF5668 at 44.717 kb on - strand, within GFF5668 at 44.717 kb on - strand, within GFF5668 at 45.265 kb on + strand at 45.265 kb on + strand at 45.265 kb on + strand at 45.265 kb on + strand at 45.266 kb on - strand at 45.266 kb on - strand at 45.266 kb on - strand at 45.266 kb on - strand at 45.266 kb on - strand at 45.266 kb on - strand at 45.354 kb on + strand at 45.355 kb on - strand at 45.355 kb on - strand at 45.590 kb on - strand, within GFF5669 at 45.701 kb on + strand, within GFF5670 at 45.702 kb on - strand, within GFF5670 at 45.740 kb on + strand, within GFF5670 at 45.740 kb on + strand, within GFF5670 at 45.740 kb on + strand, within GFF5670 at 45.740 kb on + strand, within GFF5670 at 45.740 kb on + strand, within GFF5670 at 45.741 kb on - strand, within GFF5670 at 45.741 kb on - strand, within GFF5670 at 45.741 kb on - strand, within GFF5670 at 45.741 kb on - strand, within GFF5670 at 45.741 kb on - strand, within GFF5670 at 45.849 kb on + strand at 45.849 kb on + strand at 45.849 kb on + strand at 45.850 kb on - strand at 45.850 kb on - strand at 45.860 kb on + strand at 45.860 kb on + strand at 45.860 kb on + strand at 45.861 kb on - strand at 45.861 kb on - strand at 45.861 kb on - strand at 45.861 kb on - strand at 45.959 kb on - strand, within GFF5671 at 45.959 kb on - strand, within GFF5671 at 45.959 kb on - strand, within GFF5671 at 45.959 kb on - strand, within GFF5671 at 45.959 kb on - strand, within GFF5671 at 45.959 kb on - strand, within GFF5671 at 45.984 kb on + strand, within GFF5671 at 45.984 kb on + strand, within GFF5671 at 45.984 kb on + strand, within GFF5671 at 45.984 kb on + strand, within GFF5671 at 45.984 kb on + strand, within GFF5671 at 45.985 kb on - strand, within GFF5671 at 45.985 kb on - strand, within GFF5671 at 45.985 kb on - strand, within GFF5671 at 45.985 kb on - strand, within GFF5671 at 46.001 kb on + strand, within GFF5671 at 46.003 kb on + strand, within GFF5671 at 46.003 kb on + strand, within GFF5671 at 46.003 kb on + strand, within GFF5671 at 46.003 kb on + strand, within GFF5671 at 46.003 kb on + strand, within GFF5671 at 46.003 kb on + strand, within GFF5671 at 46.003 kb on + strand, within GFF5671 at 46.003 kb on + strand, within GFF5671 at 46.003 kb on + strand, within GFF5671 at 46.003 kb on + strand, within GFF5671 at 46.003 kb on + strand, within GFF5671 at 46.003 kb on + strand, within GFF5671 at 46.004 kb on - strand, within GFF5671 at 46.004 kb on - strand, within GFF5671 at 46.004 kb on - strand, within GFF5671 at 46.004 kb on - strand, within GFF5671 at 46.004 kb on - strand, within GFF5671 at 46.004 kb on - strand, within GFF5671 at 46.004 kb on - strand, within GFF5671 at 46.004 kb on - strand, within GFF5671 at 46.004 kb on - strand, within GFF5671 at 46.057 kb on + strand, within GFF5671 at 46.057 kb on + strand, within GFF5671 at 46.057 kb on + strand, within GFF5671 at 46.057 kb on + strand, within GFF5671 at 46.058 kb on - strand, within GFF5671 at 46.058 kb on - strand, within GFF5671 at 46.102 kb on + strand, within GFF5671 at 46.102 kb on + strand, within GFF5671 at 46.102 kb on + strand, within GFF5671 at 46.102 kb on + strand, within GFF5671 at 46.102 kb on + strand, within GFF5671 at 46.102 kb on + strand, within GFF5671 at 46.102 kb on + strand, within GFF5671 at 46.103 kb on - strand, within GFF5671 at 46.103 kb on - strand, within GFF5671 at 46.103 kb on - strand, within GFF5671 at 46.103 kb on - strand, within GFF5671 at 46.103 kb on - strand, within GFF5671 at 46.103 kb on - strand, within GFF5671 at 46.103 kb on - strand, within GFF5671 at 46.103 kb on - strand, within GFF5671 at 46.103 kb on - strand, within GFF5671 at 46.240 kb on + strand, within GFF5671 at 46.240 kb on + strand, within GFF5671 at 46.240 kb on + strand, within GFF5671 at 46.240 kb on + strand, within GFF5671 at 46.240 kb on + strand, within GFF5671 at 46.240 kb on + strand, within GFF5671 at 46.240 kb on + strand, within GFF5671 at 46.240 kb on + strand, within GFF5671 at 46.240 kb on + strand, within GFF5671 at 46.240 kb on + strand, within GFF5671 at 46.240 kb on + strand, within GFF5671 at 46.241 kb on - strand, within GFF5671 at 46.241 kb on - strand, within GFF5671 at 46.241 kb on - strand, within GFF5671 at 46.241 kb on - strand, within GFF5671 at 46.241 kb on - strand, within GFF5671 at 46.241 kb on - strand, within GFF5671 at 46.241 kb on - strand, within GFF5671 at 46.241 kb on - strand, within GFF5671 at 46.241 kb on - strand, within GFF5671 at 46.241 kb on - strand, within GFF5671 at 46.261 kb on + strand, within GFF5671 at 46.261 kb on + strand, within GFF5671 at 46.261 kb on + strand, within GFF5671 at 46.261 kb on + strand, within GFF5671 at 46.261 kb on + strand, within GFF5671 at 46.262 kb on - strand, within GFF5671 at 46.262 kb on - strand, within GFF5671 at 46.262 kb on - strand, within GFF5671 at 46.262 kb on - strand, within GFF5671 at 46.262 kb on - strand, within GFF5671 at 46.262 kb on - strand, within GFF5671 at 46.262 kb on - strand, within GFF5671 at 46.262 kb on - strand, within GFF5671 at 46.262 kb on - strand, within GFF5671 at 46.324 kb on + strand, within GFF5671 at 46.324 kb on + strand, within GFF5671 at 46.324 kb on + strand, within GFF5671 at 46.325 kb on - strand, within GFF5671 at 46.325 kb on - strand, within GFF5671 at 46.325 kb on - strand, within GFF5671 at 46.325 kb on - strand, within GFF5671 at 46.342 kb on + strand, within GFF5671 at 46.342 kb on + strand, within GFF5671 at 46.342 kb on + strand, within GFF5671 at 46.342 kb on + strand, within GFF5671 at 46.342 kb on + strand, within GFF5671 at 46.343 kb on - strand, within GFF5671 at 46.343 kb on - strand, within GFF5671 at 46.343 kb on - strand, within GFF5671 at 46.343 kb on - strand, within GFF5671 at 46.417 kb on + strand, within GFF5671 at 46.417 kb on + strand, within GFF5671 at 46.418 kb on - strand, within GFF5671 at 46.418 kb on - strand, within GFF5671 at 46.630 kb on + strand at 46.630 kb on + strand at 46.630 kb on + strand at 46.631 kb on - strand at 46.631 kb on - strand at 46.635 kb on + strand at 46.635 kb on + strand at 46.635 kb on + strand at 46.635 kb on + strand at 46.635 kb on + strand at 46.635 kb on + strand at 46.635 kb on + strand at 46.636 kb on - strand at 46.636 kb on - strand at 46.636 kb on - strand at 46.636 kb on - strand at 46.636 kb on - strand at 46.636 kb on - strand at 46.636 kb on - strand at 46.638 kb on + strand at 46.638 kb on + strand at 46.638 kb on + strand at 46.638 kb on + strand at 46.638 kb on + strand at 46.638 kb on + strand at 46.639 kb on - strand at 46.639 kb on - strand at 46.639 kb on - strand at 46.639 kb on - strand at 46.639 kb on - strand at 46.639 kb on - strand at 46.639 kb on - strand at 46.639 kb on - strand at 46.639 kb on - strand at 46.639 kb on - strand at 46.639 kb on - strand at 46.639 kb on - strand at 46.675 kb on + strand at 46.675 kb on + strand at 46.676 kb on - strand at 46.676 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 44,716 + GFF5668 0.55 -0.0 44,716 + GFF5668 0.55 -0.4 44,716 + GFF5668 0.55 -2.5 44,716 + GFF5668 0.55 -0.8 44,717 - GFF5668 0.55 +0.1 44,717 - GFF5668 0.55 -2.4 44,717 - GFF5668 0.55 +1.8 44,717 - GFF5668 0.55 -1.1 44,717 - GFF5668 0.55 -0.8 45,265 + +1.0 45,265 + -0.4 45,265 + +0.9 45,265 + -1.8 45,266 - -1.2 45,266 - -0.4 45,266 - -2.4 45,266 - +0.5 45,266 - -0.0 45,266 - +2.3 45,354 + +2.0 45,355 - +0.4 45,355 - -1.8 45,590 - GFF5669 0.68 -4.3 45,701 + GFF5670 0.14 -1.0 45,702 - GFF5670 0.15 +0.4 45,740 + GFF5670 0.34 -2.6 45,740 + GFF5670 0.34 -1.2 45,740 + GFF5670 0.34 -0.0 45,740 + GFF5670 0.34 +0.4 45,740 + GFF5670 0.34 +1.4 45,741 - GFF5670 0.35 -2.1 45,741 - GFF5670 0.35 -0.0 45,741 - GFF5670 0.35 -2.8 45,741 - GFF5670 0.35 -2.5 45,741 - GFF5670 0.35 -1.2 45,849 + -1.2 45,849 + +0.0 45,849 + +2.5 45,850 - -2.1 45,850 - +0.4 45,860 + +2.8 45,860 + -0.0 45,860 + -0.8 45,861 - +0.3 45,861 - +2.5 45,861 - -0.5 45,861 - -2.1 45,959 - GFF5671 0.12 +0.5 45,959 - GFF5671 0.12 -0.4 45,959 - GFF5671 0.12 -1.8 45,959 - GFF5671 0.12 -1.8 45,959 - GFF5671 0.12 -2.0 45,959 - GFF5671 0.12 +0.8 45,984 + GFF5671 0.16 -0.4 45,984 + GFF5671 0.16 -1.0 45,984 + GFF5671 0.16 +2.5 45,984 + GFF5671 0.16 -1.9 45,984 + GFF5671 0.16 -1.0 45,985 - GFF5671 0.16 -0.5 45,985 - GFF5671 0.16 -1.6 45,985 - GFF5671 0.16 -1.7 45,985 - GFF5671 0.16 -1.9 46,001 + GFF5671 0.18 +0.0 46,003 + GFF5671 0.18 -0.1 46,003 + GFF5671 0.18 -2.9 46,003 + GFF5671 0.18 -2.9 46,003 + GFF5671 0.18 -2.1 46,003 + GFF5671 0.18 +2.0 46,003 + GFF5671 0.18 +1.2 46,003 + GFF5671 0.18 -3.0 46,003 + GFF5671 0.18 -2.6 46,003 + GFF5671 0.18 -1.0 46,003 + GFF5671 0.18 -0.0 46,003 + GFF5671 0.18 -1.9 46,003 + GFF5671 0.18 +0.0 46,004 - GFF5671 0.19 -0.4 46,004 - GFF5671 0.19 +2.1 46,004 - GFF5671 0.19 -1.0 46,004 - GFF5671 0.19 -1.0 46,004 - GFF5671 0.19 -1.6 46,004 - GFF5671 0.19 +2.0 46,004 - GFF5671 0.19 -2.3 46,004 - GFF5671 0.19 -2.0 46,004 - GFF5671 0.19 -1.1 46,057 + GFF5671 0.26 +0.3 46,057 + GFF5671 0.26 -0.4 46,057 + GFF5671 0.26 -0.8 46,057 + GFF5671 0.26 -0.4 46,058 - GFF5671 0.26 -2.3 46,058 - GFF5671 0.26 +3.0 46,102 + GFF5671 0.33 -0.9 46,102 + GFF5671 0.33 -1.9 46,102 + GFF5671 0.33 -1.6 46,102 + GFF5671 0.33 +1.5 46,102 + GFF5671 0.33 -2.0 46,102 + GFF5671 0.33 -2.1 46,102 + GFF5671 0.33 -1.0 46,103 - GFF5671 0.33 -1.5 46,103 - GFF5671 0.33 -0.7 46,103 - GFF5671 0.33 +2.2 46,103 - GFF5671 0.33 -1.2 46,103 - GFF5671 0.33 -0.6 46,103 - GFF5671 0.33 +0.6 46,103 - GFF5671 0.33 -3.1 46,103 - GFF5671 0.33 +0.1 46,103 - GFF5671 0.33 +1.0 46,240 + GFF5671 0.53 +0.5 46,240 + GFF5671 0.53 +0.5 46,240 + GFF5671 0.53 -0.1 46,240 + GFF5671 0.53 -1.5 46,240 + GFF5671 0.53 +0.7 46,240 + GFF5671 0.53 -2.7 46,240 + GFF5671 0.53 -3.7 46,240 + GFF5671 0.53 -3.4 46,240 + GFF5671 0.53 +0.4 46,240 + GFF5671 0.53 -1.0 46,240 + GFF5671 0.53 +0.2 46,241 - GFF5671 0.53 +0.4 46,241 - GFF5671 0.53 -0.7 46,241 - GFF5671 0.53 -0.7 46,241 - GFF5671 0.53 -2.1 46,241 - GFF5671 0.53 -3.1 46,241 - GFF5671 0.53 -0.9 46,241 - GFF5671 0.53 -3.6 46,241 - GFF5671 0.53 +2.7 46,241 - GFF5671 0.53 -1.0 46,241 - GFF5671 0.53 -2.7 46,261 + GFF5671 0.56 +0.3 46,261 + GFF5671 0.56 -3.0 46,261 + GFF5671 0.56 -0.5 46,261 + GFF5671 0.56 -3.4 46,261 + GFF5671 0.56 -1.3 46,262 - GFF5671 0.56 +4.5 46,262 - GFF5671 0.56 +2.5 46,262 - GFF5671 0.56 -0.0 46,262 - GFF5671 0.56 +0.4 46,262 - GFF5671 0.56 -3.9 46,262 - GFF5671 0.56 -3.0 46,262 - GFF5671 0.56 -3.3 46,262 - GFF5671 0.56 -3.5 46,262 - GFF5671 0.56 -0.1 46,324 + GFF5671 0.65 -2.5 46,324 + GFF5671 0.65 -2.1 46,324 + GFF5671 0.65 -1.5 46,325 - GFF5671 0.65 +1.2 46,325 - GFF5671 0.65 +1.0 46,325 - GFF5671 0.65 -0.0 46,325 - GFF5671 0.65 +2.5 46,342 + GFF5671 0.68 +0.8 46,342 + GFF5671 0.68 +0.2 46,342 + GFF5671 0.68 -2.7 46,342 + GFF5671 0.68 -0.1 46,342 + GFF5671 0.68 +0.3 46,343 - GFF5671 0.68 -1.8 46,343 - GFF5671 0.68 -0.9 46,343 - GFF5671 0.68 +1.9 46,343 - GFF5671 0.68 -0.6 46,417 + GFF5671 0.79 +2.8 46,417 + GFF5671 0.79 -2.0 46,418 - GFF5671 0.79 +0.0 46,418 - GFF5671 0.79 +2.0 46,630 + -1.2 46,630 + +0.7 46,630 + -0.7 46,631 - +0.7 46,631 - +0.7 46,635 + +2.0 46,635 + -0.2 46,635 + -1.4 46,635 + +0.8 46,635 + -0.9 46,635 + +0.4 46,635 + -2.5 46,636 - -0.5 46,636 - -0.6 46,636 - +1.3 46,636 - +0.7 46,636 - +0.8 46,636 - -2.0 46,636 - -0.6 46,638 + +0.8 46,638 + +2.2 46,638 + -1.2 46,638 + -1.7 46,638 + +0.9 46,638 + -3.9 46,639 - -0.9 46,639 - -1.6 46,639 - +0.7 46,639 - -2.7 46,639 - -0.6 46,639 - +0.8 46,639 - +1.2 46,639 - +1.2 46,639 - +2.4 46,639 - -1.8 46,639 - -0.6 46,639 - +0.4 46,675 + -4.1 46,675 + -1.5 46,676 - -0.8 46,676 - -0.5
Or see this region's nucleotide sequence