Strain Fitness in Variovorax sp. SCN45 around GFF5669

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5668 and GFF5669 overlap by 4 nucleotidesGFF5669 and GFF5670 overlap by 4 nucleotidesGFF5670 and GFF5671 are separated by 10 nucleotidesGFF5671 and GFF5672 are separated by 74 nucleotides GFF5668 - Uncharacterized MFS-type transporter, at 43,891 to 45,402 GFF5668 GFF5669 - hypothetical protein, at 45,399 to 45,677 GFF5669 GFF5670 - Protein SlyX, at 45,674 to 45,865 GFF5670 GFF5671 - FIG01964566: Predicted membrane protein, hemolysin III homolog, at 45,876 to 46,562 GFF5671 GFF5672 - Dna binding response regulator PrrA (RegA), at 46,637 to 47,182 GFF5672 Position (kb) 45 46Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 44.716 kb on + strand, within GFF5668at 44.716 kb on + strand, within GFF5668at 44.716 kb on + strand, within GFF5668at 44.716 kb on + strand, within GFF5668at 44.717 kb on - strand, within GFF5668at 44.717 kb on - strand, within GFF5668at 44.717 kb on - strand, within GFF5668at 44.717 kb on - strand, within GFF5668at 44.717 kb on - strand, within GFF5668at 45.265 kb on + strandat 45.265 kb on + strandat 45.265 kb on + strandat 45.265 kb on + strandat 45.266 kb on - strandat 45.266 kb on - strandat 45.266 kb on - strandat 45.266 kb on - strandat 45.266 kb on - strandat 45.266 kb on - strandat 45.354 kb on + strandat 45.355 kb on - strandat 45.355 kb on - strandat 45.590 kb on - strand, within GFF5669at 45.701 kb on + strand, within GFF5670at 45.702 kb on - strand, within GFF5670at 45.740 kb on + strand, within GFF5670at 45.740 kb on + strand, within GFF5670at 45.740 kb on + strand, within GFF5670at 45.740 kb on + strand, within GFF5670at 45.740 kb on + strand, within GFF5670at 45.741 kb on - strand, within GFF5670at 45.741 kb on - strand, within GFF5670at 45.741 kb on - strand, within GFF5670at 45.741 kb on - strand, within GFF5670at 45.741 kb on - strand, within GFF5670at 45.849 kb on + strandat 45.849 kb on + strandat 45.849 kb on + strandat 45.850 kb on - strandat 45.850 kb on - strandat 45.860 kb on + strandat 45.860 kb on + strandat 45.860 kb on + strandat 45.861 kb on - strandat 45.861 kb on - strandat 45.861 kb on - strandat 45.861 kb on - strandat 45.959 kb on - strand, within GFF5671at 45.959 kb on - strand, within GFF5671at 45.959 kb on - strand, within GFF5671at 45.959 kb on - strand, within GFF5671at 45.959 kb on - strand, within GFF5671at 45.959 kb on - strand, within GFF5671at 45.984 kb on + strand, within GFF5671at 45.984 kb on + strand, within GFF5671at 45.984 kb on + strand, within GFF5671at 45.984 kb on + strand, within GFF5671at 45.984 kb on + strand, within GFF5671at 45.985 kb on - strand, within GFF5671at 45.985 kb on - strand, within GFF5671at 45.985 kb on - strand, within GFF5671at 45.985 kb on - strand, within GFF5671at 46.001 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.057 kb on + strand, within GFF5671at 46.057 kb on + strand, within GFF5671at 46.057 kb on + strand, within GFF5671at 46.057 kb on + strand, within GFF5671at 46.058 kb on - strand, within GFF5671at 46.058 kb on - strand, within GFF5671at 46.102 kb on + strand, within GFF5671at 46.102 kb on + strand, within GFF5671at 46.102 kb on + strand, within GFF5671at 46.102 kb on + strand, within GFF5671at 46.102 kb on + strand, within GFF5671at 46.102 kb on + strand, within GFF5671at 46.102 kb on + strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.261 kb on + strand, within GFF5671at 46.261 kb on + strand, within GFF5671at 46.261 kb on + strand, within GFF5671at 46.261 kb on + strand, within GFF5671at 46.261 kb on + strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.324 kb on + strand, within GFF5671at 46.324 kb on + strand, within GFF5671at 46.324 kb on + strand, within GFF5671at 46.325 kb on - strand, within GFF5671at 46.325 kb on - strand, within GFF5671at 46.325 kb on - strand, within GFF5671at 46.325 kb on - strand, within GFF5671at 46.342 kb on + strand, within GFF5671at 46.342 kb on + strand, within GFF5671at 46.342 kb on + strand, within GFF5671at 46.342 kb on + strand, within GFF5671at 46.342 kb on + strand, within GFF5671at 46.343 kb on - strand, within GFF5671at 46.343 kb on - strand, within GFF5671at 46.343 kb on - strand, within GFF5671at 46.343 kb on - strand, within GFF5671at 46.417 kb on + strand, within GFF5671at 46.417 kb on + strand, within GFF5671at 46.418 kb on - strand, within GFF5671at 46.418 kb on - strand, within GFF5671at 46.630 kb on + strandat 46.630 kb on + strandat 46.630 kb on + strandat 46.631 kb on - strandat 46.631 kb on - strandat 46.635 kb on + strandat 46.635 kb on + strandat 46.635 kb on + strandat 46.635 kb on + strandat 46.635 kb on + strandat 46.635 kb on + strandat 46.635 kb on + strandat 46.636 kb on - strandat 46.636 kb on - strandat 46.636 kb on - strandat 46.636 kb on - strandat 46.636 kb on - strandat 46.636 kb on - strandat 46.636 kb on - strandat 46.638 kb on + strandat 46.638 kb on + strandat 46.638 kb on + strandat 46.638 kb on + strandat 46.638 kb on + strandat 46.638 kb on + strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.639 kb on - strandat 46.675 kb on + strandat 46.675 kb on + strandat 46.676 kb on - strandat 46.676 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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44,716 + GFF5668 0.55 -0.0
44,716 + GFF5668 0.55 -0.4
44,716 + GFF5668 0.55 -2.5
44,716 + GFF5668 0.55 -0.8
44,717 - GFF5668 0.55 +0.1
44,717 - GFF5668 0.55 -2.4
44,717 - GFF5668 0.55 +1.8
44,717 - GFF5668 0.55 -1.1
44,717 - GFF5668 0.55 -0.8
45,265 + +1.0
45,265 + -0.4
45,265 + +0.9
45,265 + -1.8
45,266 - -1.2
45,266 - -0.4
45,266 - -2.4
45,266 - +0.5
45,266 - -0.0
45,266 - +2.3
45,354 + +2.0
45,355 - +0.4
45,355 - -1.8
45,590 - GFF5669 0.68 -4.3
45,701 + GFF5670 0.14 -1.0
45,702 - GFF5670 0.15 +0.4
45,740 + GFF5670 0.34 -2.6
45,740 + GFF5670 0.34 -1.2
45,740 + GFF5670 0.34 -0.0
45,740 + GFF5670 0.34 +0.4
45,740 + GFF5670 0.34 +1.4
45,741 - GFF5670 0.35 -2.1
45,741 - GFF5670 0.35 -0.0
45,741 - GFF5670 0.35 -2.8
45,741 - GFF5670 0.35 -2.5
45,741 - GFF5670 0.35 -1.2
45,849 + -1.2
45,849 + +0.0
45,849 + +2.5
45,850 - -2.1
45,850 - +0.4
45,860 + +2.8
45,860 + -0.0
45,860 + -0.8
45,861 - +0.3
45,861 - +2.5
45,861 - -0.5
45,861 - -2.1
45,959 - GFF5671 0.12 +0.5
45,959 - GFF5671 0.12 -0.4
45,959 - GFF5671 0.12 -1.8
45,959 - GFF5671 0.12 -1.8
45,959 - GFF5671 0.12 -2.0
45,959 - GFF5671 0.12 +0.8
45,984 + GFF5671 0.16 -0.4
45,984 + GFF5671 0.16 -1.0
45,984 + GFF5671 0.16 +2.5
45,984 + GFF5671 0.16 -1.9
45,984 + GFF5671 0.16 -1.0
45,985 - GFF5671 0.16 -0.5
45,985 - GFF5671 0.16 -1.6
45,985 - GFF5671 0.16 -1.7
45,985 - GFF5671 0.16 -1.9
46,001 + GFF5671 0.18 +0.0
46,003 + GFF5671 0.18 -0.1
46,003 + GFF5671 0.18 -2.9
46,003 + GFF5671 0.18 -2.9
46,003 + GFF5671 0.18 -2.1
46,003 + GFF5671 0.18 +2.0
46,003 + GFF5671 0.18 +1.2
46,003 + GFF5671 0.18 -3.0
46,003 + GFF5671 0.18 -2.6
46,003 + GFF5671 0.18 -1.0
46,003 + GFF5671 0.18 -0.0
46,003 + GFF5671 0.18 -1.9
46,003 + GFF5671 0.18 +0.0
46,004 - GFF5671 0.19 -0.4
46,004 - GFF5671 0.19 +2.1
46,004 - GFF5671 0.19 -1.0
46,004 - GFF5671 0.19 -1.0
46,004 - GFF5671 0.19 -1.6
46,004 - GFF5671 0.19 +2.0
46,004 - GFF5671 0.19 -2.3
46,004 - GFF5671 0.19 -2.0
46,004 - GFF5671 0.19 -1.1
46,057 + GFF5671 0.26 +0.3
46,057 + GFF5671 0.26 -0.4
46,057 + GFF5671 0.26 -0.8
46,057 + GFF5671 0.26 -0.4
46,058 - GFF5671 0.26 -2.3
46,058 - GFF5671 0.26 +3.0
46,102 + GFF5671 0.33 -0.9
46,102 + GFF5671 0.33 -1.9
46,102 + GFF5671 0.33 -1.6
46,102 + GFF5671 0.33 +1.5
46,102 + GFF5671 0.33 -2.0
46,102 + GFF5671 0.33 -2.1
46,102 + GFF5671 0.33 -1.0
46,103 - GFF5671 0.33 -1.5
46,103 - GFF5671 0.33 -0.7
46,103 - GFF5671 0.33 +2.2
46,103 - GFF5671 0.33 -1.2
46,103 - GFF5671 0.33 -0.6
46,103 - GFF5671 0.33 +0.6
46,103 - GFF5671 0.33 -3.1
46,103 - GFF5671 0.33 +0.1
46,103 - GFF5671 0.33 +1.0
46,240 + GFF5671 0.53 +0.5
46,240 + GFF5671 0.53 +0.5
46,240 + GFF5671 0.53 -0.1
46,240 + GFF5671 0.53 -1.5
46,240 + GFF5671 0.53 +0.7
46,240 + GFF5671 0.53 -2.7
46,240 + GFF5671 0.53 -3.7
46,240 + GFF5671 0.53 -3.4
46,240 + GFF5671 0.53 +0.4
46,240 + GFF5671 0.53 -1.0
46,240 + GFF5671 0.53 +0.2
46,241 - GFF5671 0.53 +0.4
46,241 - GFF5671 0.53 -0.7
46,241 - GFF5671 0.53 -0.7
46,241 - GFF5671 0.53 -2.1
46,241 - GFF5671 0.53 -3.1
46,241 - GFF5671 0.53 -0.9
46,241 - GFF5671 0.53 -3.6
46,241 - GFF5671 0.53 +2.7
46,241 - GFF5671 0.53 -1.0
46,241 - GFF5671 0.53 -2.7
46,261 + GFF5671 0.56 +0.3
46,261 + GFF5671 0.56 -3.0
46,261 + GFF5671 0.56 -0.5
46,261 + GFF5671 0.56 -3.4
46,261 + GFF5671 0.56 -1.3
46,262 - GFF5671 0.56 +4.5
46,262 - GFF5671 0.56 +2.5
46,262 - GFF5671 0.56 -0.0
46,262 - GFF5671 0.56 +0.4
46,262 - GFF5671 0.56 -3.9
46,262 - GFF5671 0.56 -3.0
46,262 - GFF5671 0.56 -3.3
46,262 - GFF5671 0.56 -3.5
46,262 - GFF5671 0.56 -0.1
46,324 + GFF5671 0.65 -2.5
46,324 + GFF5671 0.65 -2.1
46,324 + GFF5671 0.65 -1.5
46,325 - GFF5671 0.65 +1.2
46,325 - GFF5671 0.65 +1.0
46,325 - GFF5671 0.65 -0.0
46,325 - GFF5671 0.65 +2.5
46,342 + GFF5671 0.68 +0.8
46,342 + GFF5671 0.68 +0.2
46,342 + GFF5671 0.68 -2.7
46,342 + GFF5671 0.68 -0.1
46,342 + GFF5671 0.68 +0.3
46,343 - GFF5671 0.68 -1.8
46,343 - GFF5671 0.68 -0.9
46,343 - GFF5671 0.68 +1.9
46,343 - GFF5671 0.68 -0.6
46,417 + GFF5671 0.79 +2.8
46,417 + GFF5671 0.79 -2.0
46,418 - GFF5671 0.79 +0.0
46,418 - GFF5671 0.79 +2.0
46,630 + -1.2
46,630 + +0.7
46,630 + -0.7
46,631 - +0.7
46,631 - +0.7
46,635 + +2.0
46,635 + -0.2
46,635 + -1.4
46,635 + +0.8
46,635 + -0.9
46,635 + +0.4
46,635 + -2.5
46,636 - -0.5
46,636 - -0.6
46,636 - +1.3
46,636 - +0.7
46,636 - +0.8
46,636 - -2.0
46,636 - -0.6
46,638 + +0.8
46,638 + +2.2
46,638 + -1.2
46,638 + -1.7
46,638 + +0.9
46,638 + -3.9
46,639 - -0.9
46,639 - -1.6
46,639 - +0.7
46,639 - -2.7
46,639 - -0.6
46,639 - +0.8
46,639 - +1.2
46,639 - +1.2
46,639 - +2.4
46,639 - -1.8
46,639 - -0.6
46,639 - +0.4
46,675 + -4.1
46,675 + -1.5
46,676 - -0.8
46,676 - -0.5

Or see this region's nucleotide sequence