Strain Fitness in Variovorax sp. SCN45 around GFF5666

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5664 and GFF5665 are separated by 25 nucleotidesGFF5665 and GFF5666 overlap by 4 nucleotidesGFF5666 and GFF5667 are separated by 34 nucleotides GFF5664 - hypothetical protein, at 40,632 to 42,236 GFF5664 GFF5665 - no description, at 42,262 to 42,585 GFF5665 GFF5666 - Prevent host death protein, Phd antitoxin, at 42,582 to 42,854 GFF5666 GFF5667 - Transcriptional regulator, LysR family, at 42,889 to 43,779 GFF5667 Position (kb) 42 43Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 41.626 kb on - strand, within GFF5664at 41.626 kb on - strand, within GFF5664at 41.626 kb on - strand, within GFF5664at 41.662 kb on - strand, within GFF5664at 41.662 kb on - strand, within GFF5664at 41.662 kb on - strand, within GFF5664at 41.721 kb on + strand, within GFF5664at 41.721 kb on + strand, within GFF5664at 41.721 kb on + strand, within GFF5664at 41.721 kb on + strand, within GFF5664at 41.721 kb on + strand, within GFF5664at 41.721 kb on + strand, within GFF5664at 41.721 kb on + strand, within GFF5664at 41.721 kb on + strand, within GFF5664at 41.721 kb on + strand, within GFF5664at 41.722 kb on - strand, within GFF5664at 41.722 kb on - strand, within GFF5664at 41.722 kb on - strand, within GFF5664at 41.722 kb on - strand, within GFF5664at 41.722 kb on - strand, within GFF5664at 41.722 kb on - strand, within GFF5664at 41.768 kb on + strand, within GFF5664at 41.768 kb on + strand, within GFF5664at 41.865 kb on + strand, within GFF5664at 41.865 kb on + strand, within GFF5664at 41.865 kb on + strand, within GFF5664at 41.865 kb on + strand, within GFF5664at 41.865 kb on + strand, within GFF5664at 41.865 kb on + strand, within GFF5664at 41.865 kb on + strand, within GFF5664at 41.865 kb on + strand, within GFF5664at 41.865 kb on + strand, within GFF5664at 41.865 kb on + strand, within GFF5664at 41.865 kb on + strand, within GFF5664at 41.865 kb on + strand, within GFF5664at 41.866 kb on - strand, within GFF5664at 41.866 kb on - strand, within GFF5664at 41.866 kb on - strand, within GFF5664at 41.866 kb on - strand, within GFF5664at 41.866 kb on - strand, within GFF5664at 41.866 kb on - strand, within GFF5664at 41.866 kb on - strand, within GFF5664at 41.866 kb on - strand, within GFF5664at 41.866 kb on - strand, within GFF5664at 42.335 kb on + strand, within GFF5665at 42.335 kb on + strand, within GFF5665at 42.335 kb on + strand, within GFF5665at 42.335 kb on + strand, within GFF5665at 42.335 kb on + strand, within GFF5665at 42.335 kb on + strand, within GFF5665at 42.336 kb on - strand, within GFF5665at 42.336 kb on - strand, within GFF5665at 42.336 kb on - strand, within GFF5665at 42.336 kb on - strand, within GFF5665at 42.336 kb on - strand, within GFF5665at 42.336 kb on - strand, within GFF5665at 42.336 kb on - strand, within GFF5665at 42.336 kb on - strand, within GFF5665at 42.336 kb on - strand, within GFF5665at 42.336 kb on - strand, within GFF5665at 42.336 kb on - strand, within GFF5665at 42.352 kb on + strand, within GFF5665at 42.352 kb on + strand, within GFF5665at 42.353 kb on - strand, within GFF5665at 42.353 kb on - strand, within GFF5665at 42.353 kb on - strand, within GFF5665at 42.353 kb on - strand, within GFF5665at 42.359 kb on + strand, within GFF5665at 42.359 kb on + strand, within GFF5665at 42.359 kb on + strand, within GFF5665at 42.359 kb on + strand, within GFF5665at 42.359 kb on + strand, within GFF5665at 42.359 kb on + strand, within GFF5665at 42.359 kb on + strand, within GFF5665at 42.359 kb on + strand, within GFF5665at 42.359 kb on + strand, within GFF5665at 42.359 kb on + strand, within GFF5665at 42.359 kb on + strand, within GFF5665at 42.359 kb on + strand, within GFF5665at 42.359 kb on + strand, within GFF5665at 42.359 kb on + strand, within GFF5665at 42.359 kb on + strand, within GFF5665at 42.359 kb on + strand, within GFF5665at 42.359 kb on + strand, within GFF5665at 42.360 kb on - strand, within GFF5665at 42.360 kb on - strand, within GFF5665at 42.360 kb on - strand, within GFF5665at 42.360 kb on - strand, within GFF5665at 42.360 kb on - strand, within GFF5665at 42.360 kb on - strand, within GFF5665at 42.360 kb on - strand, within GFF5665at 42.360 kb on - strand, within GFF5665at 42.360 kb on - strand, within GFF5665at 42.360 kb on - strand, within GFF5665at 42.360 kb on - strand, within GFF5665at 42.360 kb on - strand, within GFF5665at 42.360 kb on - strand, within GFF5665at 42.360 kb on - strand, within GFF5665at 42.395 kb on + strand, within GFF5665at 42.395 kb on + strand, within GFF5665at 42.488 kb on + strand, within GFF5665at 42.489 kb on - strand, within GFF5665at 42.530 kb on + strand, within GFF5665at 42.530 kb on + strand, within GFF5665at 42.530 kb on + strand, within GFF5665at 42.530 kb on + strand, within GFF5665at 42.531 kb on - strand, within GFF5665at 42.531 kb on - strand, within GFF5665at 42.531 kb on - strand, within GFF5665at 42.582 kb on - strandat 42.709 kb on + strand, within GFF5666at 42.709 kb on + strand, within GFF5666at 42.820 kb on + strand, within GFF5666at 42.820 kb on + strand, within GFF5666at 42.820 kb on + strand, within GFF5666at 42.821 kb on - strand, within GFF5666at 42.821 kb on - strand, within GFF5666at 42.821 kb on - strand, within GFF5666at 42.821 kb on - strand, within GFF5666at 42.821 kb on - strand, within GFF5666at 42.821 kb on - strand, within GFF5666at 42.821 kb on - strand, within GFF5666at 42.821 kb on - strand, within GFF5666at 42.875 kb on - strandat 42.890 kb on + strandat 42.891 kb on - strandat 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.208 kb on + strand, within GFF5667at 43.208 kb on + strand, within GFF5667at 43.208 kb on + strand, within GFF5667at 43.208 kb on + strand, within GFF5667at 43.209 kb on - strand, within GFF5667at 43.271 kb on + strand, within GFF5667at 43.272 kb on - strand, within GFF5667at 43.272 kb on - strand, within GFF5667at 43.272 kb on - strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.430 kb on + strand, within GFF5667at 43.828 kb on + strandat 43.847 kb on + strandat 43.847 kb on + strandat 43.847 kb on + strandat 43.848 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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41,626 - GFF5664 0.62 -1.0
41,626 - GFF5664 0.62 -0.4
41,626 - GFF5664 0.62 -1.7
41,662 - GFF5664 0.64 -2.8
41,662 - GFF5664 0.64 +0.3
41,662 - GFF5664 0.64 -1.2
41,721 + GFF5664 0.68 +0.5
41,721 + GFF5664 0.68 -1.3
41,721 + GFF5664 0.68 -0.6
41,721 + GFF5664 0.68 +0.8
41,721 + GFF5664 0.68 -0.0
41,721 + GFF5664 0.68 +2.9
41,721 + GFF5664 0.68 -0.3
41,721 + GFF5664 0.68 -0.5
41,721 + GFF5664 0.68 -1.0
41,722 - GFF5664 0.68 +0.1
41,722 - GFF5664 0.68 +1.4
41,722 - GFF5664 0.68 +1.0
41,722 - GFF5664 0.68 +0.4
41,722 - GFF5664 0.68 +0.2
41,722 - GFF5664 0.68 -1.5
41,768 + GFF5664 0.71 -0.8
41,768 + GFF5664 0.71 +3.7
41,865 + GFF5664 0.77 -2.4
41,865 + GFF5664 0.77 -1.9
41,865 + GFF5664 0.77 +0.1
41,865 + GFF5664 0.77 +0.6
41,865 + GFF5664 0.77 +0.4
41,865 + GFF5664 0.77 -0.8
41,865 + GFF5664 0.77 +1.0
41,865 + GFF5664 0.77 +0.1
41,865 + GFF5664 0.77 +0.3
41,865 + GFF5664 0.77 -0.6
41,865 + GFF5664 0.77 +1.0
41,865 + GFF5664 0.77 -2.2
41,866 - GFF5664 0.77 -2.2
41,866 - GFF5664 0.77 -0.2
41,866 - GFF5664 0.77 -0.3
41,866 - GFF5664 0.77 +0.3
41,866 - GFF5664 0.77 +1.7
41,866 - GFF5664 0.77 -1.6
41,866 - GFF5664 0.77 +0.9
41,866 - GFF5664 0.77 -1.2
41,866 - GFF5664 0.77 -0.3
42,335 + GFF5665 0.23 -2.8
42,335 + GFF5665 0.23 +0.8
42,335 + GFF5665 0.23 -1.4
42,335 + GFF5665 0.23 +1.2
42,335 + GFF5665 0.23 -1.3
42,335 + GFF5665 0.23 -2.6
42,336 - GFF5665 0.23 +0.6
42,336 - GFF5665 0.23 +0.3
42,336 - GFF5665 0.23 +0.1
42,336 - GFF5665 0.23 -1.7
42,336 - GFF5665 0.23 -2.0
42,336 - GFF5665 0.23 -1.1
42,336 - GFF5665 0.23 +2.0
42,336 - GFF5665 0.23 -1.9
42,336 - GFF5665 0.23 +1.0
42,336 - GFF5665 0.23 -2.5
42,336 - GFF5665 0.23 -0.6
42,352 + GFF5665 0.28 +0.5
42,352 + GFF5665 0.28 -3.9
42,353 - GFF5665 0.28 +0.4
42,353 - GFF5665 0.28 -0.8
42,353 - GFF5665 0.28 -2.9
42,353 - GFF5665 0.28 +1.0
42,359 + GFF5665 0.30 -0.7
42,359 + GFF5665 0.30 +0.4
42,359 + GFF5665 0.30 +1.0
42,359 + GFF5665 0.30 -1.3
42,359 + GFF5665 0.30 +1.1
42,359 + GFF5665 0.30 +1.2
42,359 + GFF5665 0.30 -2.8
42,359 + GFF5665 0.30 -1.2
42,359 + GFF5665 0.30 +0.7
42,359 + GFF5665 0.30 +0.3
42,359 + GFF5665 0.30 -1.8
42,359 + GFF5665 0.30 +1.8
42,359 + GFF5665 0.30 -2.6
42,359 + GFF5665 0.30 +0.6
42,359 + GFF5665 0.30 -3.1
42,359 + GFF5665 0.30 -0.6
42,359 + GFF5665 0.30 -1.6
42,360 - GFF5665 0.30 +1.0
42,360 - GFF5665 0.30 -0.0
42,360 - GFF5665 0.30 -0.1
42,360 - GFF5665 0.30 +0.4
42,360 - GFF5665 0.30 -0.5
42,360 - GFF5665 0.30 -0.1
42,360 - GFF5665 0.30 +0.4
42,360 - GFF5665 0.30 +0.5
42,360 - GFF5665 0.30 -0.6
42,360 - GFF5665 0.30 -2.2
42,360 - GFF5665 0.30 +0.5
42,360 - GFF5665 0.30 -2.2
42,360 - GFF5665 0.30 +1.0
42,360 - GFF5665 0.30 +0.1
42,395 + GFF5665 0.41 +2.0
42,395 + GFF5665 0.41 -3.3
42,488 + GFF5665 0.70 -0.2
42,489 - GFF5665 0.70 +0.4
42,530 + GFF5665 0.83 -3.2
42,530 + GFF5665 0.83 -1.2
42,530 + GFF5665 0.83 -0.4
42,530 + GFF5665 0.83 -0.7
42,531 - GFF5665 0.83 -3.8
42,531 - GFF5665 0.83 +2.1
42,531 - GFF5665 0.83 -0.7
42,582 - +1.0
42,709 + GFF5666 0.47 -1.5
42,709 + GFF5666 0.47 -1.6
42,820 + GFF5666 0.87 +0.4
42,820 + GFF5666 0.87 -2.6
42,820 + GFF5666 0.87 -1.7
42,821 - GFF5666 0.88 -3.6
42,821 - GFF5666 0.88 -1.4
42,821 - GFF5666 0.88 +2.0
42,821 - GFF5666 0.88 -3.1
42,821 - GFF5666 0.88 -0.0
42,821 - GFF5666 0.88 +1.0
42,821 - GFF5666 0.88 -1.4
42,821 - GFF5666 0.88 -1.9
42,875 - -0.1
42,890 + +0.2
42,891 - -1.0
43,076 + GFF5667 0.21 -3.4
43,076 + GFF5667 0.21 -1.4
43,076 + GFF5667 0.21 +2.1
43,076 + GFF5667 0.21 +0.1
43,076 + GFF5667 0.21 -1.9
43,076 + GFF5667 0.21 -0.8
43,076 + GFF5667 0.21 -1.8
43,076 + GFF5667 0.21 -2.9
43,076 + GFF5667 0.21 -1.2
43,076 + GFF5667 0.21 -0.4
43,076 + GFF5667 0.21 -1.5
43,076 + GFF5667 0.21 +0.4
43,076 + GFF5667 0.21 -1.5
43,076 + GFF5667 0.21 -0.6
43,076 + GFF5667 0.21 -2.2
43,076 + GFF5667 0.21 -0.7
43,077 - GFF5667 0.21 +0.8
43,077 - GFF5667 0.21 -0.1
43,077 - GFF5667 0.21 -0.4
43,077 - GFF5667 0.21 +1.7
43,077 - GFF5667 0.21 +1.3
43,077 - GFF5667 0.21 +1.3
43,077 - GFF5667 0.21 -0.9
43,077 - GFF5667 0.21 +0.4
43,077 - GFF5667 0.21 -0.8
43,077 - GFF5667 0.21 -0.8
43,077 - GFF5667 0.21 +1.4
43,077 - GFF5667 0.21 -0.6
43,208 + GFF5667 0.36 -1.0
43,208 + GFF5667 0.36 -1.6
43,208 + GFF5667 0.36 +2.0
43,208 + GFF5667 0.36 -0.6
43,209 - GFF5667 0.36 -2.2
43,271 + GFF5667 0.43 +0.6
43,272 - GFF5667 0.43 +0.2
43,272 - GFF5667 0.43 -3.3
43,272 - GFF5667 0.43 +2.1
43,366 + GFF5667 0.54 +2.0
43,366 + GFF5667 0.54 -0.8
43,366 + GFF5667 0.54 -0.5
43,366 + GFF5667 0.54 -1.6
43,366 + GFF5667 0.54 -0.1
43,366 + GFF5667 0.54 -0.7
43,366 + GFF5667 0.54 -2.0
43,366 + GFF5667 0.54 +0.7
43,366 + GFF5667 0.54 -1.8
43,366 + GFF5667 0.54 -2.7
43,366 + GFF5667 0.54 -1.8
43,366 + GFF5667 0.54 -0.3
43,366 + GFF5667 0.54 +0.1
43,366 + GFF5667 0.54 -2.2
43,366 + GFF5667 0.54 -0.0
43,366 + GFF5667 0.54 +0.8
43,366 + GFF5667 0.54 +0.6
43,366 + GFF5667 0.54 -2.1
43,366 + GFF5667 0.54 -2.1
43,367 - GFF5667 0.54 -2.1
43,367 - GFF5667 0.54 -0.1
43,367 - GFF5667 0.54 +0.6
43,367 - GFF5667 0.54 -1.4
43,367 - GFF5667 0.54 -1.4
43,367 - GFF5667 0.54 +0.2
43,367 - GFF5667 0.54 +0.6
43,367 - GFF5667 0.54 -3.1
43,367 - GFF5667 0.54 +0.8
43,367 - GFF5667 0.54 +1.6
43,367 - GFF5667 0.54 +0.0
43,367 - GFF5667 0.54 -0.8
43,367 - GFF5667 0.54 +0.8
43,367 - GFF5667 0.54 -1.0
43,367 - GFF5667 0.54 +0.4
43,430 + GFF5667 0.61 +0.6
43,828 + -0.5
43,847 + +0.1
43,847 + +0.3
43,847 + +0.1
43,848 - -0.3

Or see this region's nucleotide sequence