Strain Fitness in Variovorax sp. SCN45 around GFF5626

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5624 and GFF5625 are separated by 93 nucleotidesGFF5625 and GFF5626 are separated by 3 nucleotidesGFF5626 and GFF5627 are separated by 76 nucleotides GFF5624 - Diaminopropionate ammonia-lyase (EC 4.3.1.15), at 1,823 to 3,052 GFF5624 GFF5625 - Putative transmembrane protein, at 3,146 to 3,775 GFF5625 GFF5626 - Patatin, at 3,779 to 4,990 GFF5626 GFF5627 - [4Fe-4S] cluster assembly scaffold protein Mrp (=ApbC), at 5,067 to 6,158 GFF5627 Position (kb) 3 4 5Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2.940 kb on + strandat 2.947 kb on - strandat 2.973 kb on - strandat 2.973 kb on - strandat 3.102 kb on + strandat 3.103 kb on - strandat 3.338 kb on + strand, within GFF5625at 3.338 kb on + strand, within GFF5625at 3.338 kb on + strand, within GFF5625at 3.338 kb on + strand, within GFF5625at 3.338 kb on + strand, within GFF5625at 3.338 kb on + strand, within GFF5625at 3.338 kb on + strand, within GFF5625at 3.339 kb on - strand, within GFF5625at 3.339 kb on - strand, within GFF5625at 3.339 kb on - strand, within GFF5625at 3.339 kb on - strand, within GFF5625at 3.374 kb on + strand, within GFF5625at 3.374 kb on + strand, within GFF5625at 3.374 kb on + strand, within GFF5625at 3.374 kb on + strand, within GFF5625at 3.375 kb on - strand, within GFF5625at 3.375 kb on - strand, within GFF5625at 3.375 kb on - strand, within GFF5625at 3.375 kb on - strand, within GFF5625at 3.375 kb on - strand, within GFF5625at 3.375 kb on - strand, within GFF5625at 3.375 kb on - strand, within GFF5625at 3.425 kb on + strand, within GFF5625at 3.425 kb on + strand, within GFF5625at 3.425 kb on + strand, within GFF5625at 3.425 kb on + strand, within GFF5625at 3.425 kb on + strand, within GFF5625at 3.425 kb on + strand, within GFF5625at 3.426 kb on - strand, within GFF5625at 3.426 kb on - strand, within GFF5625at 3.524 kb on + strand, within GFF5625at 3.773 kb on + strandat 3.773 kb on + strandat 3.773 kb on + strandat 3.773 kb on + strandat 3.774 kb on - strandat 3.774 kb on - strandat 3.774 kb on - strandat 3.774 kb on - strandat 3.774 kb on - strandat 3.774 kb on - strandat 3.780 kb on + strandat 3.882 kb on + strandat 3.882 kb on + strandat 3.883 kb on - strandat 3.903 kb on + strand, within GFF5626at 3.903 kb on + strand, within GFF5626at 3.903 kb on + strand, within GFF5626at 3.903 kb on + strand, within GFF5626at 3.904 kb on - strand, within GFF5626at 3.904 kb on - strand, within GFF5626at 3.904 kb on - strand, within GFF5626at 3.904 kb on - strand, within GFF5626at 3.904 kb on - strand, within GFF5626at 3.904 kb on - strand, within GFF5626at 3.961 kb on - strand, within GFF5626at 3.961 kb on - strand, within GFF5626at 4.506 kb on + strand, within GFF5626at 4.506 kb on + strand, within GFF5626at 4.506 kb on + strand, within GFF5626at 4.506 kb on + strand, within GFF5626at 4.506 kb on + strand, within GFF5626at 4.506 kb on + strand, within GFF5626at 4.507 kb on - strand, within GFF5626at 4.507 kb on - strand, within GFF5626at 4.725 kb on + strand, within GFF5626at 4.725 kb on + strand, within GFF5626at 4.725 kb on + strand, within GFF5626at 4.725 kb on + strand, within GFF5626at 4.725 kb on + strand, within GFF5626at 4.725 kb on + strand, within GFF5626at 4.725 kb on + strand, within GFF5626at 4.725 kb on + strand, within GFF5626at 4.725 kb on + strand, within GFF5626at 4.726 kb on - strand, within GFF5626at 4.726 kb on - strand, within GFF5626at 4.929 kb on + strandat 4.929 kb on + strandat 4.929 kb on + strandat 4.929 kb on + strandat 4.930 kb on - strandat 4.930 kb on - strandat 4.999 kb on + strandat 5.037 kb on + strandat 5.037 kb on + strandat 5.037 kb on + strandat 5.038 kb on - strandat 5.038 kb on - strandat 5.038 kb on - strandat 5.038 kb on - strandat 5.038 kb on - strandat 5.038 kb on - strandat 5.038 kb on - strandat 5.038 kb on - strandat 5.043 kb on - strandat 5.120 kb on + strandat 5.478 kb on + strand, within GFF5627at 5.478 kb on + strand, within GFF5627at 5.478 kb on + strand, within GFF5627at 5.478 kb on + strand, within GFF5627at 5.479 kb on - strand, within GFF5627at 5.479 kb on - strand, within GFF5627at 5.479 kb on - strand, within GFF5627at 5.479 kb on - strand, within GFF5627at 5.479 kb on - strand, within GFF5627at 5.479 kb on - strand, within GFF5627at 5.479 kb on - strand, within GFF5627at 5.479 kb on - strand, within GFF5627at 5.479 kb on - strand, within GFF5627at 5.479 kb on - strand, within GFF5627at 5.688 kb on + strand, within GFF5627at 5.688 kb on + strand, within GFF5627at 5.688 kb on + strand, within GFF5627at 5.689 kb on - strand, within GFF5627at 5.961 kb on + strand, within GFF5627at 5.961 kb on + strand, within GFF5627at 5.961 kb on + strand, within GFF5627at 5.961 kb on + strand, within GFF5627at 5.962 kb on - strand, within GFF5627

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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2,940 + +2.5
2,947 - -0.0
2,973 - -0.5
2,973 - +0.3
3,102 + +1.6
3,103 - +0.5
3,338 + GFF5625 0.30 -0.1
3,338 + GFF5625 0.30 -0.2
3,338 + GFF5625 0.30 +1.2
3,338 + GFF5625 0.30 +0.4
3,338 + GFF5625 0.30 -0.3
3,338 + GFF5625 0.30 -1.6
3,338 + GFF5625 0.30 -0.4
3,339 - GFF5625 0.31 +0.7
3,339 - GFF5625 0.31 -1.9
3,339 - GFF5625 0.31 -2.4
3,339 - GFF5625 0.31 +0.3
3,374 + GFF5625 0.36 -0.2
3,374 + GFF5625 0.36 -1.4
3,374 + GFF5625 0.36 -1.6
3,374 + GFF5625 0.36 -0.5
3,375 - GFF5625 0.36 +1.3
3,375 - GFF5625 0.36 -0.8
3,375 - GFF5625 0.36 -1.2
3,375 - GFF5625 0.36 -2.6
3,375 - GFF5625 0.36 -0.3
3,375 - GFF5625 0.36 +0.4
3,375 - GFF5625 0.36 -1.9
3,425 + GFF5625 0.44 -3.9
3,425 + GFF5625 0.44 -1.4
3,425 + GFF5625 0.44 -1.5
3,425 + GFF5625 0.44 -0.4
3,425 + GFF5625 0.44 +0.6
3,425 + GFF5625 0.44 -0.8
3,426 - GFF5625 0.44 -1.2
3,426 - GFF5625 0.44 -0.2
3,524 + GFF5625 0.60 -1.1
3,773 + +2.2
3,773 + +1.0
3,773 + +0.2
3,773 + +0.4
3,774 - -0.5
3,774 - -0.6
3,774 - -1.8
3,774 - -2.5
3,774 - +0.3
3,774 - +0.8
3,780 + +0.4
3,882 + -1.7
3,882 + -4.1
3,883 - +1.9
3,903 + GFF5626 0.10 -0.2
3,903 + GFF5626 0.10 +0.5
3,903 + GFF5626 0.10 -1.2
3,903 + GFF5626 0.10 +0.8
3,904 - GFF5626 0.10 -2.1
3,904 - GFF5626 0.10 -3.1
3,904 - GFF5626 0.10 -0.6
3,904 - GFF5626 0.10 -1.5
3,904 - GFF5626 0.10 -1.5
3,904 - GFF5626 0.10 -1.9
3,961 - GFF5626 0.15 -1.4
3,961 - GFF5626 0.15 +1.1
4,506 + GFF5626 0.60 -1.9
4,506 + GFF5626 0.60 -0.0
4,506 + GFF5626 0.60 -0.4
4,506 + GFF5626 0.60 -2.8
4,506 + GFF5626 0.60 +1.1
4,506 + GFF5626 0.60 -0.4
4,507 - GFF5626 0.60 -0.5
4,507 - GFF5626 0.60 -1.4
4,725 + GFF5626 0.78 -0.6
4,725 + GFF5626 0.78 -2.4
4,725 + GFF5626 0.78 -1.8
4,725 + GFF5626 0.78 -2.2
4,725 + GFF5626 0.78 -1.6
4,725 + GFF5626 0.78 +0.5
4,725 + GFF5626 0.78 -0.6
4,725 + GFF5626 0.78 -1.2
4,725 + GFF5626 0.78 -0.0
4,726 - GFF5626 0.78 +1.5
4,726 - GFF5626 0.78 -1.7
4,929 + -2.7
4,929 + -2.2
4,929 + +1.5
4,929 + -2.2
4,930 - -2.5
4,930 - -0.4
4,999 + +2.2
5,037 + -0.6
5,037 + -1.2
5,037 + -0.7
5,038 - -1.6
5,038 - +1.0
5,038 - -0.0
5,038 - -0.6
5,038 - -1.2
5,038 - -2.1
5,038 - -2.3
5,038 - +1.1
5,043 - -0.0
5,120 + -1.5
5,478 + GFF5627 0.38 -0.4
5,478 + GFF5627 0.38 -4.2
5,478 + GFF5627 0.38 -2.9
5,478 + GFF5627 0.38 -2.6
5,479 - GFF5627 0.38 -2.4
5,479 - GFF5627 0.38 +0.4
5,479 - GFF5627 0.38 -1.2
5,479 - GFF5627 0.38 -0.8
5,479 - GFF5627 0.38 -1.2
5,479 - GFF5627 0.38 -0.0
5,479 - GFF5627 0.38 -3.3
5,479 - GFF5627 0.38 -0.6
5,479 - GFF5627 0.38 -1.2
5,479 - GFF5627 0.38 -3.6
5,688 + GFF5627 0.57 -3.3
5,688 + GFF5627 0.57 -2.6
5,688 + GFF5627 0.57 -2.1
5,689 - GFF5627 0.57 -1.0
5,961 + GFF5627 0.82 -1.0
5,961 + GFF5627 0.82 -2.0
5,961 + GFF5627 0.82 -3.5
5,961 + GFF5627 0.82 -2.9
5,962 - GFF5627 0.82 -4.2

Or see this region's nucleotide sequence