Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5617 and GFF5618 are separated by 118 nucleotides GFF5618 and GFF5619 are separated by 93 nucleotides
GFF5617 - Coenzyme A ligase, at 239,878 to 241,128
GFF5617
GFF5618 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 241,247 to 242,059
GFF5618
GFF5619 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 242,153 to 243,484
GFF5619
Position (kb) 241
242
243 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 240.404 kb on + strand, within GFF5617 at 240.404 kb on + strand, within GFF5617 at 240.434 kb on + strand, within GFF5617 at 240.435 kb on - strand, within GFF5617 at 240.435 kb on - strand, within GFF5617 at 240.565 kb on + strand, within GFF5617 at 240.565 kb on + strand, within GFF5617 at 240.565 kb on + strand, within GFF5617 at 240.565 kb on + strand, within GFF5617 at 240.566 kb on - strand, within GFF5617 at 240.723 kb on - strand, within GFF5617 at 240.821 kb on + strand, within GFF5617 at 240.822 kb on - strand, within GFF5617 at 241.276 kb on - strand at 241.276 kb on - strand at 241.276 kb on - strand at 241.276 kb on - strand at 241.405 kb on - strand, within GFF5618 at 241.405 kb on - strand, within GFF5618 at 241.410 kb on + strand, within GFF5618 at 241.410 kb on + strand, within GFF5618 at 241.411 kb on - strand, within GFF5618 at 241.620 kb on + strand, within GFF5618 at 241.621 kb on - strand, within GFF5618 at 241.668 kb on + strand, within GFF5618 at 241.668 kb on + strand, within GFF5618 at 241.668 kb on + strand, within GFF5618 at 241.668 kb on + strand, within GFF5618 at 241.668 kb on + strand, within GFF5618 at 241.669 kb on - strand, within GFF5618 at 241.669 kb on - strand, within GFF5618 at 241.669 kb on - strand, within GFF5618 at 241.669 kb on - strand, within GFF5618 at 241.669 kb on - strand, within GFF5618 at 242.010 kb on + strand at 242.010 kb on + strand at 242.010 kb on + strand at 242.010 kb on + strand at 242.010 kb on + strand at 242.011 kb on - strand at 242.011 kb on - strand at 242.011 kb on - strand at 242.011 kb on - strand at 242.011 kb on - strand at 242.205 kb on + strand at 242.205 kb on + strand at 242.206 kb on - strand at 242.206 kb on - strand at 242.523 kb on + strand, within GFF5619 at 242.644 kb on - strand, within GFF5619 at 242.644 kb on - strand, within GFF5619 at 242.706 kb on + strand, within GFF5619 at 242.706 kb on + strand, within GFF5619 at 242.706 kb on + strand, within GFF5619 at 242.707 kb on - strand, within GFF5619 at 242.707 kb on - strand, within GFF5619 at 242.940 kb on + strand, within GFF5619 at 242.941 kb on - strand, within GFF5619 at 243.031 kb on - strand, within GFF5619
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 240,404 + GFF5617 0.42 +2.3 240,404 + GFF5617 0.42 +2.3 240,434 + GFF5617 0.44 -2.0 240,435 - GFF5617 0.45 -1.0 240,435 - GFF5617 0.45 -2.2 240,565 + GFF5617 0.55 -4.1 240,565 + GFF5617 0.55 -0.4 240,565 + GFF5617 0.55 -0.9 240,565 + GFF5617 0.55 -1.5 240,566 - GFF5617 0.55 +1.1 240,723 - GFF5617 0.68 -3.6 240,821 + GFF5617 0.75 +0.3 240,822 - GFF5617 0.75 -0.9 241,276 - -2.3 241,276 - -3.2 241,276 - +0.4 241,276 - +0.7 241,405 - GFF5618 0.19 -1.3 241,405 - GFF5618 0.19 +0.8 241,410 + GFF5618 0.20 -0.0 241,410 + GFF5618 0.20 -1.8 241,411 - GFF5618 0.20 -1.8 241,620 + GFF5618 0.46 -0.1 241,621 - GFF5618 0.46 +0.3 241,668 + GFF5618 0.52 -2.0 241,668 + GFF5618 0.52 -1.1 241,668 + GFF5618 0.52 -1.5 241,668 + GFF5618 0.52 +0.9 241,668 + GFF5618 0.52 +0.3 241,669 - GFF5618 0.52 +0.7 241,669 - GFF5618 0.52 +0.3 241,669 - GFF5618 0.52 -1.2 241,669 - GFF5618 0.52 -0.3 241,669 - GFF5618 0.52 -1.1 242,010 + +0.7 242,010 + -2.1 242,010 + -2.3 242,010 + -1.9 242,010 + -1.9 242,011 - +0.7 242,011 - -0.1 242,011 - -1.2 242,011 - -1.7 242,011 - -0.2 242,205 + +1.1 242,205 + +0.1 242,206 - -1.9 242,206 - -2.7 242,523 + GFF5619 0.28 -2.0 242,644 - GFF5619 0.37 -0.6 242,644 - GFF5619 0.37 -0.3 242,706 + GFF5619 0.42 +0.4 242,706 + GFF5619 0.42 -1.2 242,706 + GFF5619 0.42 -2.1 242,707 - GFF5619 0.42 -0.7 242,707 - GFF5619 0.42 -0.5 242,940 + GFF5619 0.59 +0.8 242,941 - GFF5619 0.59 -0.0 243,031 - GFF5619 0.66 +0.3
Or see this region's nucleotide sequence