Strain Fitness in Variovorax sp. SCN45 around GFF5583

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5582 and GFF5583 are separated by 63 nucleotidesGFF5583 and GFF5584 are separated by 12 nucleotides GFF5582 - BUG/TctC family periplasmic protein, at 203,203 to 204,231 GFF5582 GFF5583 - Transcriptional regulator PA0181, LysR family, at 204,295 to 205,245 GFF5583 GFF5584 - Cyclic-di-GMP-binding biofilm dispersal mediator protein, at 205,258 to 206,142 GFF5584 Position (kb) 204 205 206Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 203.633 kb on + strand, within GFF5582at 203.633 kb on + strand, within GFF5582at 203.633 kb on + strand, within GFF5582at 203.634 kb on - strand, within GFF5582at 203.634 kb on - strand, within GFF5582at 203.634 kb on - strand, within GFF5582at 203.634 kb on - strand, within GFF5582at 203.634 kb on - strand, within GFF5582at 203.634 kb on - strand, within GFF5582at 203.634 kb on - strand, within GFF5582at 203.634 kb on - strand, within GFF5582at 203.636 kb on - strand, within GFF5582at 203.750 kb on + strand, within GFF5582at 203.750 kb on + strand, within GFF5582at 203.750 kb on + strand, within GFF5582at 203.751 kb on - strand, within GFF5582at 203.751 kb on - strand, within GFF5582at 203.751 kb on - strand, within GFF5582at 203.841 kb on + strand, within GFF5582at 203.841 kb on + strand, within GFF5582at 203.841 kb on + strand, within GFF5582at 203.842 kb on - strand, within GFF5582at 203.842 kb on - strand, within GFF5582at 203.885 kb on + strand, within GFF5582at 203.885 kb on + strand, within GFF5582at 203.885 kb on + strand, within GFF5582at 203.886 kb on - strand, within GFF5582at 203.886 kb on - strand, within GFF5582at 203.936 kb on + strand, within GFF5582at 203.936 kb on + strand, within GFF5582at 203.937 kb on - strand, within GFF5582at 203.937 kb on - strand, within GFF5582at 204.243 kb on + strandat 204.243 kb on + strandat 204.243 kb on + strandat 204.243 kb on + strandat 204.244 kb on - strandat 204.244 kb on - strandat 204.244 kb on - strandat 204.398 kb on + strand, within GFF5583at 204.398 kb on + strand, within GFF5583at 204.399 kb on - strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.401 kb on + strand, within GFF5583at 204.402 kb on - strand, within GFF5583at 204.402 kb on - strand, within GFF5583at 204.402 kb on - strand, within GFF5583at 204.402 kb on - strand, within GFF5583at 204.402 kb on - strand, within GFF5583at 204.402 kb on - strand, within GFF5583at 204.402 kb on - strand, within GFF5583at 204.402 kb on - strand, within GFF5583at 204.402 kb on - strand, within GFF5583at 204.402 kb on - strand, within GFF5583at 204.402 kb on - strand, within GFF5583at 204.428 kb on + strand, within GFF5583at 204.429 kb on - strand, within GFF5583at 204.429 kb on - strand, within GFF5583at 204.429 kb on - strand, within GFF5583at 204.686 kb on - strand, within GFF5583at 204.734 kb on + strand, within GFF5583at 204.734 kb on + strand, within GFF5583at 204.734 kb on + strand, within GFF5583at 204.735 kb on - strand, within GFF5583at 204.735 kb on - strand, within GFF5583at 204.735 kb on - strand, within GFF5583at 204.735 kb on - strand, within GFF5583at 205.266 kb on - strandat 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 206.071 kb on + strandat 206.071 kb on + strandat 206.071 kb on + strandat 206.072 kb on - strandat 206.072 kb on - strandat 206.072 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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203,633 + GFF5582 0.42 +0.7
203,633 + GFF5582 0.42 +0.3
203,633 + GFF5582 0.42 +0.8
203,634 - GFF5582 0.42 +1.1
203,634 - GFF5582 0.42 +1.3
203,634 - GFF5582 0.42 -1.3
203,634 - GFF5582 0.42 -0.3
203,634 - GFF5582 0.42 -0.0
203,634 - GFF5582 0.42 +0.1
203,634 - GFF5582 0.42 -0.1
203,634 - GFF5582 0.42 +0.2
203,636 - GFF5582 0.42 +1.0
203,750 + GFF5582 0.53 -1.0
203,750 + GFF5582 0.53 -0.5
203,750 + GFF5582 0.53 +1.7
203,751 - GFF5582 0.53 +0.7
203,751 - GFF5582 0.53 -2.3
203,751 - GFF5582 0.53 +2.2
203,841 + GFF5582 0.62 +0.3
203,841 + GFF5582 0.62 -1.0
203,841 + GFF5582 0.62 -1.7
203,842 - GFF5582 0.62 -2.0
203,842 - GFF5582 0.62 +0.1
203,885 + GFF5582 0.66 +0.5
203,885 + GFF5582 0.66 +0.8
203,885 + GFF5582 0.66 -0.3
203,886 - GFF5582 0.66 -2.1
203,886 - GFF5582 0.66 +2.0
203,936 + GFF5582 0.71 +0.7
203,936 + GFF5582 0.71 -0.6
203,937 - GFF5582 0.71 +0.9
203,937 - GFF5582 0.71 +4.0
204,243 + +0.2
204,243 + +0.1
204,243 + +1.3
204,243 + -0.0
204,244 - +0.5
204,244 - -0.1
204,244 - +0.2
204,398 + GFF5583 0.11 +1.3
204,398 + GFF5583 0.11 -1.6
204,399 - GFF5583 0.11 -0.0
204,401 + GFF5583 0.11 +0.9
204,401 + GFF5583 0.11 -1.0
204,401 + GFF5583 0.11 +0.4
204,401 + GFF5583 0.11 -2.1
204,401 + GFF5583 0.11 -0.5
204,401 + GFF5583 0.11 -0.1
204,401 + GFF5583 0.11 +0.3
204,401 + GFF5583 0.11 +1.8
204,401 + GFF5583 0.11 +1.2
204,401 + GFF5583 0.11 -3.1
204,401 + GFF5583 0.11 -0.7
204,401 + GFF5583 0.11 +1.4
204,401 + GFF5583 0.11 -0.7
204,402 - GFF5583 0.11 +0.2
204,402 - GFF5583 0.11 -0.0
204,402 - GFF5583 0.11 -2.7
204,402 - GFF5583 0.11 +1.5
204,402 - GFF5583 0.11 -1.9
204,402 - GFF5583 0.11 +3.4
204,402 - GFF5583 0.11 +1.3
204,402 - GFF5583 0.11 -0.1
204,402 - GFF5583 0.11 -1.4
204,402 - GFF5583 0.11 -0.5
204,402 - GFF5583 0.11 +0.5
204,428 + GFF5583 0.14 +0.4
204,429 - GFF5583 0.14 +1.6
204,429 - GFF5583 0.14 -1.4
204,429 - GFF5583 0.14 +0.8
204,686 - GFF5583 0.41 +0.0
204,734 + GFF5583 0.46 +1.3
204,734 + GFF5583 0.46 +0.1
204,734 + GFF5583 0.46 -0.7
204,735 - GFF5583 0.46 -1.6
204,735 - GFF5583 0.46 -0.2
204,735 - GFF5583 0.46 +1.7
204,735 - GFF5583 0.46 -1.1
205,266 - -1.7
205,507 + GFF5584 0.28 +2.5
205,507 + GFF5584 0.28 +0.3
205,507 + GFF5584 0.28 -1.6
205,507 + GFF5584 0.28 +2.5
205,507 + GFF5584 0.28 -0.2
205,507 + GFF5584 0.28 +1.3
205,507 + GFF5584 0.28 -2.3
205,507 + GFF5584 0.28 -2.2
205,507 + GFF5584 0.28 -0.7
205,508 - GFF5584 0.28 +2.0
205,508 - GFF5584 0.28 -0.5
205,508 - GFF5584 0.28 -0.5
205,508 - GFF5584 0.28 +0.9
205,508 - GFF5584 0.28 -4.0
205,508 - GFF5584 0.28 -0.5
205,508 - GFF5584 0.28 -0.9
205,508 - GFF5584 0.28 +1.2
205,508 - GFF5584 0.28 -2.5
205,508 - GFF5584 0.28 +1.6
205,508 - GFF5584 0.28 -1.3
205,508 - GFF5584 0.28 -2.1
205,508 - GFF5584 0.28 +0.7
205,864 + GFF5584 0.68 -1.7
205,864 + GFF5584 0.68 -1.2
205,864 + GFF5584 0.68 -0.0
205,864 + GFF5584 0.68 +0.7
205,864 + GFF5584 0.68 -2.2
205,864 + GFF5584 0.68 +1.4
205,864 + GFF5584 0.68 +2.6
205,864 + GFF5584 0.68 +0.7
205,864 + GFF5584 0.68 -1.6
205,864 + GFF5584 0.68 +0.5
205,864 + GFF5584 0.68 -1.4
205,865 - GFF5584 0.69 +1.2
205,865 - GFF5584 0.69 -1.1
205,865 - GFF5584 0.69 +0.6
205,865 - GFF5584 0.69 +0.8
205,865 - GFF5584 0.69 +1.0
205,865 - GFF5584 0.69 -0.7
205,865 - GFF5584 0.69 -1.5
205,865 - GFF5584 0.69 +1.1
205,865 - GFF5584 0.69 -1.6
205,865 - GFF5584 0.69 -3.2
205,865 - GFF5584 0.69 -2.7
205,865 - GFF5584 0.69 -1.2
206,071 + -1.8
206,071 + -0.4
206,071 + +0.3
206,072 - -2.3
206,072 - -2.6
206,072 - -2.0

Or see this region's nucleotide sequence