Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5544 and GFF5545 are separated by 10 nucleotides GFF5545 and GFF5546 are separated by 45 nucleotides GFF5546 and GFF5547 overlap by 4 nucleotides
GFF5544 - FIG001614: Membrane protein, at 172,121 to 173,077
GFF5544
GFF5545 - Pyrrolidone-carboxylate peptidase (EC 3.4.19.3), at 173,088 to 173,771
GFF5545
GFF5546 - Lactam utilization protein LamB, at 173,817 to 174,584
GFF5546
GFF5547 - Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) / Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54), at 174,581 to 176,173
GFF5547
Position (kb) 173
174
175 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 172.865 kb on + strand, within GFF5544 at 172.865 kb on + strand, within GFF5544 at 172.865 kb on + strand, within GFF5544 at 172.865 kb on + strand, within GFF5544 at 172.865 kb on + strand, within GFF5544 at 172.866 kb on - strand, within GFF5544 at 172.866 kb on - strand, within GFF5544 at 172.913 kb on + strand, within GFF5544 at 172.914 kb on - strand, within GFF5544 at 173.013 kb on + strand at 173.013 kb on + strand at 173.013 kb on + strand at 173.014 kb on - strand at 173.014 kb on - strand at 173.014 kb on - strand at 173.057 kb on + strand at 173.057 kb on + strand at 173.057 kb on + strand at 173.058 kb on - strand at 173.058 kb on - strand at 173.406 kb on + strand, within GFF5545 at 173.451 kb on + strand, within GFF5545 at 173.451 kb on + strand, within GFF5545 at 173.451 kb on + strand, within GFF5545 at 173.452 kb on - strand, within GFF5545 at 173.452 kb on - strand, within GFF5545 at 173.556 kb on + strand, within GFF5545 at 173.559 kb on + strand, within GFF5545 at 173.559 kb on + strand, within GFF5545 at 173.559 kb on + strand, within GFF5545 at 173.559 kb on + strand, within GFF5545 at 173.559 kb on + strand, within GFF5545 at 173.559 kb on + strand, within GFF5545 at 173.559 kb on + strand, within GFF5545 at 173.559 kb on + strand, within GFF5545 at 173.560 kb on - strand, within GFF5545 at 173.560 kb on - strand, within GFF5545 at 173.560 kb on - strand, within GFF5545 at 173.560 kb on - strand, within GFF5545 at 173.631 kb on + strand, within GFF5545 at 173.632 kb on - strand, within GFF5545 at 173.632 kb on - strand, within GFF5545 at 173.632 kb on - strand, within GFF5545 at 173.632 kb on - strand, within GFF5545 at 173.632 kb on - strand, within GFF5545 at 174.009 kb on + strand, within GFF5546 at 174.010 kb on - strand, within GFF5546 at 174.081 kb on + strand, within GFF5546 at 174.081 kb on + strand, within GFF5546 at 174.081 kb on + strand, within GFF5546 at 174.081 kb on + strand, within GFF5546 at 174.082 kb on - strand, within GFF5546 at 174.082 kb on - strand, within GFF5546 at 174.082 kb on - strand, within GFF5546 at 174.136 kb on - strand, within GFF5546 at 174.136 kb on - strand, within GFF5546 at 174.159 kb on + strand, within GFF5546 at 174.159 kb on + strand, within GFF5546 at 174.159 kb on + strand, within GFF5546 at 174.159 kb on + strand, within GFF5546 at 174.159 kb on + strand, within GFF5546 at 174.159 kb on + strand, within GFF5546 at 174.159 kb on + strand, within GFF5546 at 174.159 kb on + strand, within GFF5546 at 174.159 kb on + strand, within GFF5546 at 174.159 kb on + strand, within GFF5546 at 174.160 kb on - strand, within GFF5546 at 174.160 kb on - strand, within GFF5546 at 174.160 kb on - strand, within GFF5546 at 174.160 kb on - strand, within GFF5546 at 174.160 kb on - strand, within GFF5546 at 174.325 kb on - strand, within GFF5546 at 174.325 kb on - strand, within GFF5546 at 174.325 kb on - strand, within GFF5546 at 174.843 kb on - strand, within GFF5547 at 174.926 kb on + strand, within GFF5547 at 174.926 kb on + strand, within GFF5547 at 174.927 kb on - strand, within GFF5547 at 174.927 kb on - strand, within GFF5547 at 174.927 kb on - strand, within GFF5547 at 174.927 kb on - strand, within GFF5547 at 174.965 kb on + strand, within GFF5547 at 174.965 kb on + strand, within GFF5547 at 174.966 kb on - strand, within GFF5547 at 174.966 kb on - strand, within GFF5547 at 174.966 kb on - strand, within GFF5547 at 175.070 kb on + strand, within GFF5547 at 175.071 kb on - strand, within GFF5547 at 175.439 kb on + strand, within GFF5547 at 175.440 kb on - strand, within GFF5547 at 175.440 kb on - strand, within GFF5547 at 175.440 kb on - strand, within GFF5547 at 175.582 kb on - strand, within GFF5547
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 172,865 + GFF5544 0.78 -1.3 172,865 + GFF5544 0.78 +0.5 172,865 + GFF5544 0.78 -3.4 172,865 + GFF5544 0.78 -1.7 172,865 + GFF5544 0.78 -0.3 172,866 - GFF5544 0.78 -3.0 172,866 - GFF5544 0.78 -0.5 172,913 + GFF5544 0.83 +0.2 172,914 - GFF5544 0.83 -1.0 173,013 + +0.6 173,013 + -1.5 173,013 + +0.3 173,014 - +0.0 173,014 - +1.8 173,014 - +1.7 173,057 + +2.6 173,057 + +1.3 173,057 + +1.8 173,058 - +0.4 173,058 - -3.3 173,406 + GFF5545 0.46 -0.8 173,451 + GFF5545 0.53 -1.2 173,451 + GFF5545 0.53 -0.1 173,451 + GFF5545 0.53 +1.2 173,452 - GFF5545 0.53 -1.2 173,452 - GFF5545 0.53 +0.5 173,556 + GFF5545 0.68 -4.5 173,559 + GFF5545 0.69 -1.2 173,559 + GFF5545 0.69 -0.4 173,559 + GFF5545 0.69 -2.0 173,559 + GFF5545 0.69 +0.2 173,559 + GFF5545 0.69 -1.7 173,559 + GFF5545 0.69 -1.4 173,559 + GFF5545 0.69 -2.6 173,559 + GFF5545 0.69 -1.4 173,560 - GFF5545 0.69 -0.7 173,560 - GFF5545 0.69 +0.2 173,560 - GFF5545 0.69 -1.3 173,560 - GFF5545 0.69 +1.4 173,631 + GFF5545 0.79 -2.7 173,632 - GFF5545 0.80 -1.1 173,632 - GFF5545 0.80 +0.1 173,632 - GFF5545 0.80 -0.9 173,632 - GFF5545 0.80 -1.3 173,632 - GFF5545 0.80 -0.7 174,009 + GFF5546 0.25 -3.6 174,010 - GFF5546 0.25 -1.0 174,081 + GFF5546 0.34 -2.1 174,081 + GFF5546 0.34 -0.2 174,081 + GFF5546 0.34 -3.1 174,081 + GFF5546 0.34 -0.0 174,082 - GFF5546 0.35 +3.0 174,082 - GFF5546 0.35 -0.1 174,082 - GFF5546 0.35 +1.5 174,136 - GFF5546 0.42 -0.7 174,136 - GFF5546 0.42 +0.3 174,159 + GFF5546 0.45 -0.4 174,159 + GFF5546 0.45 -1.8 174,159 + GFF5546 0.45 +2.7 174,159 + GFF5546 0.45 -1.1 174,159 + GFF5546 0.45 -0.0 174,159 + GFF5546 0.45 -0.9 174,159 + GFF5546 0.45 +3.0 174,159 + GFF5546 0.45 -0.8 174,159 + GFF5546 0.45 +1.2 174,159 + GFF5546 0.45 -0.0 174,160 - GFF5546 0.45 -0.9 174,160 - GFF5546 0.45 +0.2 174,160 - GFF5546 0.45 -2.0 174,160 - GFF5546 0.45 -0.6 174,160 - GFF5546 0.45 +0.4 174,325 - GFF5546 0.66 -0.8 174,325 - GFF5546 0.66 +0.9 174,325 - GFF5546 0.66 +0.9 174,843 - GFF5547 0.16 -0.3 174,926 + GFF5547 0.22 -2.2 174,926 + GFF5547 0.22 -3.1 174,927 - GFF5547 0.22 +0.7 174,927 - GFF5547 0.22 +0.3 174,927 - GFF5547 0.22 -1.3 174,927 - GFF5547 0.22 -1.4 174,965 + GFF5547 0.24 -0.4 174,965 + GFF5547 0.24 +0.0 174,966 - GFF5547 0.24 -4.0 174,966 - GFF5547 0.24 +1.0 174,966 - GFF5547 0.24 -2.2 175,070 + GFF5547 0.31 -0.5 175,071 - GFF5547 0.31 -0.5 175,439 + GFF5547 0.54 -0.8 175,440 - GFF5547 0.54 -1.2 175,440 - GFF5547 0.54 -1.2 175,440 - GFF5547 0.54 -3.3 175,582 - GFF5547 0.63 -1.7
Or see this region's nucleotide sequence