Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5508 and GFF5509 are separated by 107 nucleotides GFF5509 and GFF5510 are separated by 0 nucleotides GFF5510 and GFF5511 are separated by 135 nucleotides
GFF5508 - Fructose-bisphosphate aldolase class II (EC 4.1.2.13), at 139,180 to 140,244
GFF5508
GFF5509 - Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6), at 140,352 to 141,257
GFF5509
GFF5510 - protein of unknown function DUF306, Meta and HslJ, at 141,258 to 141,713
GFF5510
GFF5511 - FIG000875: Thioredoxin domain-containing protein EC-YbbN, at 141,849 to 142,769
GFF5511
Position (kb) 140
141
142 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 140.209 kb on + strand at 140.209 kb on + strand at 140.209 kb on + strand at 140.209 kb on + strand at 140.209 kb on + strand at 140.209 kb on + strand at 140.209 kb on + strand at 140.209 kb on + strand at 140.209 kb on + strand at 140.209 kb on + strand at 140.209 kb on + strand at 140.209 kb on + strand at 140.209 kb on + strand at 140.210 kb on - strand at 140.210 kb on - strand at 140.210 kb on - strand at 140.210 kb on - strand at 140.210 kb on - strand at 140.210 kb on - strand at 140.210 kb on - strand at 140.210 kb on - strand at 140.210 kb on - strand at 140.210 kb on - strand at 140.210 kb on - strand at 140.210 kb on - strand at 140.210 kb on - strand at 140.210 kb on - strand at 140.210 kb on - strand at 140.243 kb on - strand at 140.243 kb on - strand at 140.421 kb on + strand at 140.421 kb on + strand at 140.421 kb on + strand at 140.421 kb on + strand at 140.421 kb on + strand at 140.421 kb on + strand at 140.421 kb on + strand at 140.421 kb on + strand at 140.421 kb on + strand at 140.421 kb on + strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.422 kb on - strand at 140.695 kb on - strand, within GFF5509 at 140.695 kb on - strand, within GFF5509 at 140.695 kb on - strand, within GFF5509 at 140.721 kb on + strand, within GFF5509 at 140.721 kb on + strand, within GFF5509 at 140.721 kb on + strand, within GFF5509 at 140.722 kb on - strand, within GFF5509 at 140.722 kb on - strand, within GFF5509 at 140.722 kb on - strand, within GFF5509 at 140.722 kb on - strand, within GFF5509 at 140.722 kb on - strand, within GFF5509 at 140.850 kb on + strand, within GFF5509 at 140.850 kb on + strand, within GFF5509 at 140.850 kb on + strand, within GFF5509 at 140.850 kb on + strand, within GFF5509 at 140.850 kb on + strand, within GFF5509 at 140.850 kb on + strand, within GFF5509 at 140.851 kb on - strand, within GFF5509 at 140.851 kb on - strand, within GFF5509 at 140.919 kb on + strand, within GFF5509 at 140.920 kb on - strand, within GFF5509 at 140.920 kb on - strand, within GFF5509 at 140.920 kb on - strand, within GFF5509 at 140.920 kb on - strand, within GFF5509 at 140.920 kb on - strand, within GFF5509 at 141.048 kb on + strand, within GFF5509 at 141.048 kb on + strand, within GFF5509 at 141.048 kb on + strand, within GFF5509 at 141.049 kb on - strand, within GFF5509 at 141.066 kb on + strand, within GFF5509 at 141.066 kb on + strand, within GFF5509 at 141.066 kb on + strand, within GFF5509 at 141.066 kb on + strand, within GFF5509 at 141.067 kb on - strand, within GFF5509 at 141.067 kb on - strand, within GFF5509 at 141.105 kb on + strand, within GFF5509 at 141.105 kb on + strand, within GFF5509 at 141.106 kb on - strand, within GFF5509 at 141.106 kb on - strand, within GFF5509 at 141.225 kb on + strand at 141.225 kb on + strand at 141.225 kb on + strand at 141.225 kb on + strand at 141.226 kb on - strand at 141.226 kb on - strand at 141.226 kb on - strand at 141.343 kb on + strand, within GFF5510 at 141.343 kb on + strand, within GFF5510 at 141.343 kb on + strand, within GFF5510 at 141.343 kb on + strand, within GFF5510 at 141.343 kb on + strand, within GFF5510 at 141.343 kb on + strand, within GFF5510 at 141.343 kb on + strand, within GFF5510 at 141.343 kb on + strand, within GFF5510 at 141.343 kb on + strand, within GFF5510 at 141.343 kb on + strand, within GFF5510 at 141.343 kb on + strand, within GFF5510 at 141.343 kb on + strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.344 kb on - strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.466 kb on + strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.467 kb on - strand, within GFF5510 at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on + strand at 141.765 kb on - strand at 141.766 kb on - strand at 141.766 kb on - strand at 141.766 kb on - strand at 141.766 kb on - strand at 141.766 kb on - strand at 141.766 kb on - strand at 141.766 kb on - strand at 141.766 kb on - strand at 141.766 kb on - strand at 141.766 kb on - strand at 141.766 kb on - strand at 141.766 kb on - strand at 141.883 kb on + strand at 141.883 kb on + strand at 141.883 kb on + strand at 141.883 kb on + strand at 141.883 kb on + strand at 141.883 kb on + strand at 141.884 kb on - strand at 141.884 kb on - strand at 141.884 kb on - strand at 141.970 kb on + strand, within GFF5511 at 141.970 kb on + strand, within GFF5511 at 141.970 kb on + strand, within GFF5511 at 141.970 kb on + strand, within GFF5511 at 141.970 kb on + strand, within GFF5511 at 141.970 kb on + strand, within GFF5511 at 141.970 kb on + strand, within GFF5511 at 141.970 kb on + strand, within GFF5511 at 141.970 kb on + strand, within GFF5511 at 141.970 kb on + strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511 at 141.971 kb on - strand, within GFF5511
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 140,209 + +0.0 140,209 + -0.9 140,209 + -1.8 140,209 + -3.9 140,209 + +0.7 140,209 + +0.8 140,209 + +0.9 140,209 + -0.0 140,209 + +0.3 140,209 + -1.7 140,209 + +1.3 140,209 + -0.5 140,209 + -1.5 140,210 - -1.5 140,210 - +1.9 140,210 - -0.0 140,210 - -0.3 140,210 - -2.5 140,210 - -2.3 140,210 - -1.0 140,210 - +0.3 140,210 - +1.1 140,210 - -2.1 140,210 - -1.3 140,210 - -1.1 140,210 - +1.3 140,210 - +1.3 140,210 - -0.5 140,243 - -1.2 140,243 - -0.4 140,421 + -3.3 140,421 + -2.5 140,421 + -3.6 140,421 + -3.1 140,421 + -2.1 140,421 + -4.2 140,421 + -3.8 140,421 + -3.5 140,421 + -1.9 140,421 + -3.4 140,422 - -1.3 140,422 - -1.7 140,422 - -1.6 140,422 - -2.7 140,422 - -2.7 140,422 - -2.6 140,422 - -4.0 140,422 - -4.1 140,422 - -2.6 140,422 - -4.5 140,422 - -1.5 140,422 - -1.6 140,422 - -3.0 140,422 - -1.7 140,695 - GFF5509 0.38 -1.5 140,695 - GFF5509 0.38 -1.8 140,695 - GFF5509 0.38 -2.2 140,721 + GFF5509 0.41 -3.5 140,721 + GFF5509 0.41 -2.2 140,721 + GFF5509 0.41 -3.6 140,722 - GFF5509 0.41 -3.9 140,722 - GFF5509 0.41 -2.1 140,722 - GFF5509 0.41 -3.0 140,722 - GFF5509 0.41 -1.5 140,722 - GFF5509 0.41 -1.2 140,850 + GFF5509 0.55 -2.6 140,850 + GFF5509 0.55 -2.9 140,850 + GFF5509 0.55 -2.9 140,850 + GFF5509 0.55 -1.3 140,850 + GFF5509 0.55 -3.1 140,850 + GFF5509 0.55 -2.8 140,851 - GFF5509 0.55 -4.0 140,851 - GFF5509 0.55 -0.3 140,919 + GFF5509 0.63 -2.2 140,920 - GFF5509 0.63 -1.5 140,920 - GFF5509 0.63 -4.6 140,920 - GFF5509 0.63 -1.9 140,920 - GFF5509 0.63 -3.4 140,920 - GFF5509 0.63 -1.3 141,048 + GFF5509 0.77 -3.0 141,048 + GFF5509 0.77 -3.6 141,048 + GFF5509 0.77 -1.5 141,049 - GFF5509 0.77 -1.3 141,066 + GFF5509 0.79 -1.8 141,066 + GFF5509 0.79 -3.2 141,066 + GFF5509 0.79 -2.0 141,066 + GFF5509 0.79 -2.2 141,067 - GFF5509 0.79 -3.0 141,067 - GFF5509 0.79 -2.0 141,105 + GFF5509 0.83 -2.0 141,105 + GFF5509 0.83 -5.2 141,106 - GFF5509 0.83 -3.9 141,106 - GFF5509 0.83 -3.5 141,225 + -2.0 141,225 + -0.9 141,225 + -1.6 141,225 + -1.8 141,226 - -1.7 141,226 - -1.0 141,226 - -2.7 141,343 + GFF5510 0.19 -2.4 141,343 + GFF5510 0.19 -0.7 141,343 + GFF5510 0.19 +0.3 141,343 + GFF5510 0.19 -2.3 141,343 + GFF5510 0.19 -1.8 141,343 + GFF5510 0.19 -2.5 141,343 + GFF5510 0.19 -0.2 141,343 + GFF5510 0.19 +1.0 141,343 + GFF5510 0.19 -0.5 141,343 + GFF5510 0.19 -3.7 141,343 + GFF5510 0.19 +1.5 141,343 + GFF5510 0.19 +1.6 141,344 - GFF5510 0.19 -1.2 141,344 - GFF5510 0.19 -0.5 141,344 - GFF5510 0.19 -0.7 141,344 - GFF5510 0.19 -3.0 141,344 - GFF5510 0.19 +0.5 141,344 - GFF5510 0.19 +1.0 141,344 - GFF5510 0.19 +0.5 141,344 - GFF5510 0.19 -3.2 141,344 - GFF5510 0.19 -0.7 141,344 - GFF5510 0.19 +2.3 141,344 - GFF5510 0.19 +0.6 141,344 - GFF5510 0.19 +3.0 141,344 - GFF5510 0.19 -3.2 141,466 + GFF5510 0.46 -1.3 141,466 + GFF5510 0.46 -2.6 141,466 + GFF5510 0.46 +0.1 141,466 + GFF5510 0.46 +0.4 141,466 + GFF5510 0.46 -1.0 141,466 + GFF5510 0.46 -0.8 141,466 + GFF5510 0.46 -2.8 141,466 + GFF5510 0.46 +0.3 141,466 + GFF5510 0.46 -1.6 141,466 + GFF5510 0.46 +5.3 141,466 + GFF5510 0.46 -2.3 141,466 + GFF5510 0.46 -0.4 141,466 + GFF5510 0.46 -1.5 141,467 - GFF5510 0.46 -3.3 141,467 - GFF5510 0.46 +0.3 141,467 - GFF5510 0.46 +0.5 141,467 - GFF5510 0.46 +2.5 141,467 - GFF5510 0.46 +0.5 141,467 - GFF5510 0.46 -0.7 141,467 - GFF5510 0.46 +1.5 141,467 - GFF5510 0.46 -0.5 141,467 - GFF5510 0.46 +1.8 141,467 - GFF5510 0.46 +0.8 141,467 - GFF5510 0.46 -0.0 141,467 - GFF5510 0.46 -1.1 141,467 - GFF5510 0.46 -2.0 141,467 - GFF5510 0.46 -4.9 141,467 - GFF5510 0.46 +1.5 141,467 - GFF5510 0.46 +2.9 141,467 - GFF5510 0.46 +1.9 141,467 - GFF5510 0.46 +1.0 141,467 - GFF5510 0.46 -0.1 141,467 - GFF5510 0.46 +0.0 141,467 - GFF5510 0.46 -0.5 141,467 - GFF5510 0.46 +0.8 141,467 - GFF5510 0.46 +2.0 141,467 - GFF5510 0.46 +1.0 141,467 - GFF5510 0.46 -3.1 141,467 - GFF5510 0.46 +1.4 141,765 + -3.0 141,765 + +0.6 141,765 + -1.7 141,765 + +0.2 141,765 + +4.1 141,765 + +0.3 141,765 + +0.5 141,765 + +0.1 141,765 + -1.3 141,765 + -0.3 141,765 + -0.0 141,765 + +1.1 141,765 + -0.8 141,765 + -0.9 141,765 + +1.5 141,765 - -1.5 141,766 - +0.8 141,766 - +0.8 141,766 - -1.2 141,766 - -3.5 141,766 - +2.5 141,766 - +0.3 141,766 - +0.0 141,766 - -1.7 141,766 - -0.9 141,766 - -0.9 141,766 - -0.2 141,766 - -0.4 141,883 + +0.4 141,883 + -3.3 141,883 + -1.2 141,883 + -0.9 141,883 + +0.2 141,883 + +0.3 141,884 - +1.5 141,884 - +0.5 141,884 - -0.4 141,970 + GFF5511 0.13 +0.2 141,970 + GFF5511 0.13 -1.1 141,970 + GFF5511 0.13 +0.7 141,970 + GFF5511 0.13 -0.7 141,970 + GFF5511 0.13 -0.5 141,970 + GFF5511 0.13 -0.7 141,970 + GFF5511 0.13 +0.6 141,970 + GFF5511 0.13 -0.4 141,970 + GFF5511 0.13 +0.7 141,970 + GFF5511 0.13 -0.6 141,971 - GFF5511 0.13 +0.5 141,971 - GFF5511 0.13 +1.6 141,971 - GFF5511 0.13 -0.0 141,971 - GFF5511 0.13 -1.2 141,971 - GFF5511 0.13 -3.9 141,971 - GFF5511 0.13 -1.7 141,971 - GFF5511 0.13 -0.4 141,971 - GFF5511 0.13 -0.8 141,971 - GFF5511 0.13 -0.9 141,971 - GFF5511 0.13 +3.6 141,971 - GFF5511 0.13 -0.1 141,971 - GFF5511 0.13 -0.9 141,971 - GFF5511 0.13 +1.0 141,971 - GFF5511 0.13 -0.3 141,971 - GFF5511 0.13 +2.5 141,971 - GFF5511 0.13 -0.6 141,971 - GFF5511 0.13 -1.4 141,971 - GFF5511 0.13 -1.8 141,971 - GFF5511 0.13 -1.2 141,971 - GFF5511 0.13 +0.3
Or see this region's nucleotide sequence