Strain Fitness in Variovorax sp. SCN45 around GFF5395

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5393 and GFF5394 are separated by 5 nucleotidesGFF5394 and GFF5395 are separated by 32 nucleotidesGFF5395 and GFF5396 overlap by 17 nucleotidesGFF5396 and GFF5397 are separated by 16 nucleotides GFF5393 - mandelate racemase/muconate lactonizing enzyme family protein, at 18,606 to 19,715 GFF5393 GFF5394 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 19,721 to 20,548 GFF5394 GFF5395 - Glutamine ABC transporter, ATP-binding protein GlnQ, at 20,581 to 21,309 GFF5395 GFF5396 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 21,293 to 21,949 GFF5396 GFF5397 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 21,966 to 22,649 GFF5397 Position (kb) 20 21 22Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 19.776 kb on + strandat 19.776 kb on + strandat 19.776 kb on + strandat 19.776 kb on + strandat 19.776 kb on + strandat 19.776 kb on + strandat 19.776 kb on + strandat 19.776 kb on + strandat 19.776 kb on + strandat 19.776 kb on + strandat 19.777 kb on - strandat 19.777 kb on - strandat 19.777 kb on - strandat 19.777 kb on - strandat 19.777 kb on - strandat 19.777 kb on - strandat 19.777 kb on - strandat 20.169 kb on + strand, within GFF5394at 20.169 kb on + strand, within GFF5394at 20.169 kb on + strand, within GFF5394at 20.169 kb on + strand, within GFF5394at 20.380 kb on - strand, within GFF5394at 20.380 kb on - strand, within GFF5394at 20.380 kb on - strand, within GFF5394at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 21.044 kb on + strand, within GFF5395at 21.044 kb on + strand, within GFF5395at 21.044 kb on + strand, within GFF5395at 21.044 kb on + strand, within GFF5395at 21.044 kb on + strand, within GFF5395at 21.044 kb on + strand, within GFF5395at 21.044 kb on + strand, within GFF5395at 21.044 kb on + strand, within GFF5395at 21.045 kb on - strand, within GFF5395at 21.045 kb on - strand, within GFF5395at 21.045 kb on - strand, within GFF5395at 21.045 kb on - strand, within GFF5395at 21.045 kb on - strand, within GFF5395at 21.045 kb on - strand, within GFF5395at 21.045 kb on - strand, within GFF5395at 21.045 kb on - strand, within GFF5395at 21.366 kb on + strand, within GFF5396at 21.366 kb on + strand, within GFF5396at 21.366 kb on + strand, within GFF5396at 21.367 kb on - strand, within GFF5396at 21.367 kb on - strand, within GFF5396at 21.367 kb on - strand, within GFF5396at 21.390 kb on + strand, within GFF5396at 21.390 kb on + strand, within GFF5396at 21.435 kb on + strand, within GFF5396at 21.435 kb on + strand, within GFF5396at 21.435 kb on + strand, within GFF5396at 21.435 kb on + strand, within GFF5396at 21.435 kb on + strand, within GFF5396at 21.435 kb on + strand, within GFF5396at 21.435 kb on + strand, within GFF5396at 21.436 kb on - strand, within GFF5396at 21.436 kb on - strand, within GFF5396at 21.436 kb on - strand, within GFF5396at 21.663 kb on + strand, within GFF5396at 21.663 kb on + strand, within GFF5396at 21.663 kb on + strand, within GFF5396at 21.663 kb on + strand, within GFF5396at 21.663 kb on + strand, within GFF5396at 21.663 kb on + strand, within GFF5396at 21.663 kb on + strand, within GFF5396at 21.663 kb on + strand, within GFF5396at 21.664 kb on - strand, within GFF5396at 21.664 kb on - strand, within GFF5396at 21.664 kb on - strand, within GFF5396at 21.752 kb on + strand, within GFF5396at 21.752 kb on + strand, within GFF5396at 21.752 kb on + strand, within GFF5396at 21.753 kb on - strand, within GFF5396at 21.753 kb on - strand, within GFF5396at 21.786 kb on + strand, within GFF5396at 21.786 kb on + strand, within GFF5396at 21.787 kb on - strand, within GFF5396at 21.787 kb on - strand, within GFF5396at 22.042 kb on + strand, within GFF5397at 22.042 kb on + strand, within GFF5397at 22.042 kb on + strand, within GFF5397at 22.043 kb on - strand, within GFF5397at 22.043 kb on - strand, within GFF5397at 22.053 kb on + strand, within GFF5397at 22.053 kb on + strand, within GFF5397at 22.053 kb on + strand, within GFF5397at 22.053 kb on + strand, within GFF5397at 22.054 kb on - strand, within GFF5397at 22.054 kb on - strand, within GFF5397at 22.054 kb on - strand, within GFF5397at 22.054 kb on - strand, within GFF5397at 22.054 kb on - strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.209 kb on + strand, within GFF5397at 22.209 kb on + strand, within GFF5397at 22.209 kb on + strand, within GFF5397at 22.209 kb on + strand, within GFF5397at 22.209 kb on + strand, within GFF5397at 22.209 kb on + strand, within GFF5397at 22.209 kb on + strand, within GFF5397at 22.210 kb on - strand, within GFF5397

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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19,776 + -1.2
19,776 + -2.1
19,776 + +2.3
19,776 + +0.2
19,776 + -0.7
19,776 + -0.0
19,776 + +0.5
19,776 + +1.6
19,776 + +1.8
19,776 + +0.4
19,777 - +2.2
19,777 - +0.8
19,777 - -1.4
19,777 - -0.3
19,777 - -0.3
19,777 - -1.7
19,777 - +0.1
20,169 + GFF5394 0.54 +0.8
20,169 + GFF5394 0.54 +1.1
20,169 + GFF5394 0.54 +1.2
20,169 + GFF5394 0.54 -2.8
20,380 - GFF5394 0.80 -3.3
20,380 - GFF5394 0.80 +1.6
20,380 - GFF5394 0.80 +0.6
20,678 + GFF5395 0.13 +0.7
20,678 + GFF5395 0.13 +2.1
20,678 + GFF5395 0.13 -1.5
20,678 + GFF5395 0.13 -2.1
20,678 + GFF5395 0.13 +2.8
20,678 + GFF5395 0.13 +2.5
20,678 + GFF5395 0.13 -0.2
20,678 + GFF5395 0.13 -0.3
20,678 + GFF5395 0.13 +4.1
20,678 + GFF5395 0.13 -1.1
20,678 + GFF5395 0.13 -0.9
20,678 + GFF5395 0.13 -3.1
20,678 + GFF5395 0.13 -0.2
20,678 + GFF5395 0.13 +0.9
20,678 + GFF5395 0.13 -2.0
20,679 - GFF5395 0.13 +0.7
20,679 - GFF5395 0.13 +0.3
20,679 - GFF5395 0.13 -0.7
20,679 - GFF5395 0.13 +0.1
20,679 - GFF5395 0.13 +0.6
20,679 - GFF5395 0.13 -2.8
20,679 - GFF5395 0.13 -2.7
20,679 - GFF5395 0.13 +1.0
20,679 - GFF5395 0.13 +0.7
20,679 - GFF5395 0.13 -4.1
20,679 - GFF5395 0.13 +2.2
20,679 - GFF5395 0.13 +0.7
20,679 - GFF5395 0.13 +0.3
20,679 - GFF5395 0.13 +2.2
21,044 + GFF5395 0.64 -0.4
21,044 + GFF5395 0.64 -1.2
21,044 + GFF5395 0.64 +1.4
21,044 + GFF5395 0.64 -2.0
21,044 + GFF5395 0.64 +1.4
21,044 + GFF5395 0.64 +0.1
21,044 + GFF5395 0.64 +1.1
21,044 + GFF5395 0.64 -1.2
21,045 - GFF5395 0.64 -0.7
21,045 - GFF5395 0.64 -3.7
21,045 - GFF5395 0.64 -0.0
21,045 - GFF5395 0.64 +0.6
21,045 - GFF5395 0.64 -0.5
21,045 - GFF5395 0.64 +1.3
21,045 - GFF5395 0.64 +0.8
21,045 - GFF5395 0.64 -0.3
21,366 + GFF5396 0.11 -0.3
21,366 + GFF5396 0.11 -2.0
21,366 + GFF5396 0.11 -1.0
21,367 - GFF5396 0.11 -0.6
21,367 - GFF5396 0.11 +0.5
21,367 - GFF5396 0.11 -2.0
21,390 + GFF5396 0.15 -0.5
21,390 + GFF5396 0.15 -0.7
21,435 + GFF5396 0.22 +0.3
21,435 + GFF5396 0.22 -1.6
21,435 + GFF5396 0.22 +0.3
21,435 + GFF5396 0.22 -1.7
21,435 + GFF5396 0.22 +0.2
21,435 + GFF5396 0.22 -2.9
21,435 + GFF5396 0.22 -1.6
21,436 - GFF5396 0.22 +0.4
21,436 - GFF5396 0.22 +1.3
21,436 - GFF5396 0.22 -0.0
21,663 + GFF5396 0.56 +0.9
21,663 + GFF5396 0.56 -2.6
21,663 + GFF5396 0.56 -0.6
21,663 + GFF5396 0.56 +1.9
21,663 + GFF5396 0.56 -0.7
21,663 + GFF5396 0.56 -1.7
21,663 + GFF5396 0.56 -2.3
21,663 + GFF5396 0.56 -1.3
21,664 - GFF5396 0.56 +1.1
21,664 - GFF5396 0.56 -0.0
21,664 - GFF5396 0.56 -0.7
21,752 + GFF5396 0.70 -0.0
21,752 + GFF5396 0.70 -1.9
21,752 + GFF5396 0.70 +1.1
21,753 - GFF5396 0.70 -2.7
21,753 - GFF5396 0.70 -1.4
21,786 + GFF5396 0.75 -1.6
21,786 + GFF5396 0.75 -1.6
21,787 - GFF5396 0.75 +0.6
21,787 - GFF5396 0.75 -2.9
22,042 + GFF5397 0.11 -0.7
22,042 + GFF5397 0.11 -1.0
22,042 + GFF5397 0.11 -0.1
22,043 - GFF5397 0.11 -0.5
22,043 - GFF5397 0.11 -0.2
22,053 + GFF5397 0.13 -1.4
22,053 + GFF5397 0.13 -2.6
22,053 + GFF5397 0.13 +1.4
22,053 + GFF5397 0.13 -1.2
22,054 - GFF5397 0.13 +3.4
22,054 - GFF5397 0.13 -3.0
22,054 - GFF5397 0.13 -1.8
22,054 - GFF5397 0.13 -1.5
22,054 - GFF5397 0.13 -2.7
22,057 + GFF5397 0.13 -1.3
22,057 + GFF5397 0.13 +2.7
22,057 + GFF5397 0.13 -1.7
22,057 + GFF5397 0.13 +0.1
22,057 + GFF5397 0.13 +0.7
22,057 + GFF5397 0.13 -3.0
22,057 + GFF5397 0.13 +2.2
22,057 + GFF5397 0.13 +0.9
22,058 - GFF5397 0.13 +1.3
22,058 - GFF5397 0.13 +0.5
22,058 - GFF5397 0.13 -3.1
22,058 - GFF5397 0.13 -2.1
22,058 - GFF5397 0.13 +0.1
22,058 - GFF5397 0.13 -0.3
22,058 - GFF5397 0.13 +0.7
22,058 - GFF5397 0.13 +1.0
22,058 - GFF5397 0.13 -0.6
22,058 - GFF5397 0.13 -3.2
22,058 - GFF5397 0.13 -2.3
22,209 + GFF5397 0.36 +1.3
22,209 + GFF5397 0.36 -1.2
22,209 + GFF5397 0.36 -0.3
22,209 + GFF5397 0.36 +0.8
22,209 + GFF5397 0.36 -1.8
22,209 + GFF5397 0.36 +2.3
22,209 + GFF5397 0.36 -1.2
22,210 - GFF5397 0.36 -1.1

Or see this region's nucleotide sequence