Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5375 and GFF5376 are separated by 31 nucleotides GFF5376 and GFF5377 are separated by 71 nucleotides GFF5377 and GFF5378 are separated by 1 nucleotides
GFF5375 - Acyl-CoA dehydrogenase, at 1,505 to 3,145
GFF5375
GFF5376 - hypothetical protein, at 3,177 to 4,010
GFF5376
GFF5377 - Transcriptional regulator, AcrR family, at 4,082 to 4,717
GFF5377
GFF5378 - hypothetical protein, at 4,719 to 4,928
GFF5378
Position (kb) 3
4
5 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 2.178 kb on + strand, within GFF5375 at 2.178 kb on + strand, within GFF5375 at 2.178 kb on + strand, within GFF5375 at 2.178 kb on + strand, within GFF5375 at 2.178 kb on + strand, within GFF5375 at 2.179 kb on - strand, within GFF5375 at 2.179 kb on - strand, within GFF5375 at 2.694 kb on + strand, within GFF5375 at 2.694 kb on + strand, within GFF5375 at 2.694 kb on + strand, within GFF5375 at 2.695 kb on - strand, within GFF5375 at 2.695 kb on - strand, within GFF5375 at 2.695 kb on - strand, within GFF5375 at 2.695 kb on - strand, within GFF5375 at 2.695 kb on - strand, within GFF5375 at 2.784 kb on + strand, within GFF5375 at 2.784 kb on + strand, within GFF5375 at 2.784 kb on + strand, within GFF5375 at 2.784 kb on + strand, within GFF5375 at 2.784 kb on + strand, within GFF5375 at 2.784 kb on + strand, within GFF5375 at 2.785 kb on - strand, within GFF5375 at 2.785 kb on - strand, within GFF5375 at 2.785 kb on - strand, within GFF5375 at 2.785 kb on - strand, within GFF5375 at 2.785 kb on - strand, within GFF5375 at 2.785 kb on - strand, within GFF5375 at 2.785 kb on - strand, within GFF5375 at 2.785 kb on - strand, within GFF5375 at 2.785 kb on - strand, within GFF5375 at 2.785 kb on - strand, within GFF5375 at 2.785 kb on - strand, within GFF5375 at 2.785 kb on - strand, within GFF5375 at 2.800 kb on - strand, within GFF5375 at 2.800 kb on - strand, within GFF5375 at 2.997 kb on + strand at 2.997 kb on + strand at 2.998 kb on - strand at 3.084 kb on + strand at 3.084 kb on + strand at 3.084 kb on + strand at 3.085 kb on - strand at 3.085 kb on - strand at 3.085 kb on - strand at 3.085 kb on - strand at 3.085 kb on - strand at 3.085 kb on - strand at 3.085 kb on - strand at 3.085 kb on - strand at 3.085 kb on - strand at 3.085 kb on - strand at 3.093 kb on + strand at 3.093 kb on + strand at 3.093 kb on + strand at 3.093 kb on + strand at 3.093 kb on + strand at 3.093 kb on + strand at 3.093 kb on + strand at 3.093 kb on + strand at 3.093 kb on + strand at 3.093 kb on + strand at 3.094 kb on - strand at 3.094 kb on - strand at 3.094 kb on - strand at 3.094 kb on - strand at 3.094 kb on - strand at 3.094 kb on - strand at 3.094 kb on - strand at 3.094 kb on - strand at 3.094 kb on - strand at 3.245 kb on - strand at 3.245 kb on - strand at 3.547 kb on + strand, within GFF5376 at 3.547 kb on + strand, within GFF5376 at 3.548 kb on - strand, within GFF5376 at 3.548 kb on - strand, within GFF5376 at 3.548 kb on - strand, within GFF5376 at 3.639 kb on + strand, within GFF5376 at 3.640 kb on - strand, within GFF5376 at 3.640 kb on - strand, within GFF5376 at 3.964 kb on + strand at 3.964 kb on + strand at 3.964 kb on + strand at 3.965 kb on - strand at 3.965 kb on - strand at 3.965 kb on - strand at 3.965 kb on - strand at 3.965 kb on - strand at 3.965 kb on - strand at 4.043 kb on - strand at 4.262 kb on + strand, within GFF5377 at 4.262 kb on + strand, within GFF5377 at 4.262 kb on + strand, within GFF5377 at 4.262 kb on + strand, within GFF5377 at 4.263 kb on - strand, within GFF5377 at 4.263 kb on - strand, within GFF5377 at 4.263 kb on - strand, within GFF5377 at 4.263 kb on - strand, within GFF5377 at 4.263 kb on - strand, within GFF5377 at 4.268 kb on + strand, within GFF5377 at 4.268 kb on + strand, within GFF5377 at 4.268 kb on + strand, within GFF5377 at 4.268 kb on + strand, within GFF5377 at 4.268 kb on + strand, within GFF5377 at 4.268 kb on + strand, within GFF5377 at 4.269 kb on - strand, within GFF5377 at 4.451 kb on + strand, within GFF5377 at 4.451 kb on + strand, within GFF5377 at 4.451 kb on + strand, within GFF5377 at 4.452 kb on - strand, within GFF5377 at 4.452 kb on - strand, within GFF5377 at 4.452 kb on - strand, within GFF5377 at 4.452 kb on - strand, within GFF5377 at 4.452 kb on - strand, within GFF5377 at 4.452 kb on - strand, within GFF5377 at 4.452 kb on - strand, within GFF5377 at 4.452 kb on - strand, within GFF5377 at 4.452 kb on - strand, within GFF5377 at 4.452 kb on - strand, within GFF5377 at 4.488 kb on - strand, within GFF5377 at 4.499 kb on + strand, within GFF5377 at 4.499 kb on + strand, within GFF5377 at 4.499 kb on + strand, within GFF5377 at 4.499 kb on + strand, within GFF5377 at 4.499 kb on + strand, within GFF5377 at 4.499 kb on + strand, within GFF5377 at 4.499 kb on + strand, within GFF5377 at 4.499 kb on + strand, within GFF5377 at 4.499 kb on + strand, within GFF5377 at 4.500 kb on - strand, within GFF5377 at 4.500 kb on - strand, within GFF5377 at 4.500 kb on - strand, within GFF5377 at 4.500 kb on - strand, within GFF5377 at 4.500 kb on - strand, within GFF5377 at 4.500 kb on - strand, within GFF5377 at 4.500 kb on - strand, within GFF5377 at 4.500 kb on - strand, within GFF5377 at 4.500 kb on - strand, within GFF5377 at 4.500 kb on - strand, within GFF5377 at 4.500 kb on - strand, within GFF5377 at 4.500 kb on - strand, within GFF5377 at 4.500 kb on - strand, within GFF5377 at 4.500 kb on - strand, within GFF5377 at 4.500 kb on - strand, within GFF5377 at 4.500 kb on - strand, within GFF5377 at 4.500 kb on - strand, within GFF5377 at 4.500 kb on - strand, within GFF5377 at 4.500 kb on - strand, within GFF5377 at 4.500 kb on - strand, within GFF5377 at 4.604 kb on + strand, within GFF5377 at 4.605 kb on - strand, within GFF5377 at 4.605 kb on - strand, within GFF5377 at 4.694 kb on + strand at 4.695 kb on - strand at 4.941 kb on + strand at 4.941 kb on + strand at 4.941 kb on + strand at 4.941 kb on + strand at 4.942 kb on - strand at 4.942 kb on - strand at 4.942 kb on - strand at 4.942 kb on - strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.943 kb on + strand at 4.944 kb on - strand at 4.944 kb on - strand at 4.944 kb on - strand at 4.944 kb on - strand at 4.944 kb on - strand at 4.944 kb on - strand at 4.944 kb on - strand at 4.944 kb on - strand at 4.968 kb on + strand at 4.968 kb on + strand at 4.968 kb on + strand at 4.969 kb on - strand at 4.969 kb on - strand at 4.969 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 2,178 + GFF5375 0.41 +1.8 2,178 + GFF5375 0.41 +2.1 2,178 + GFF5375 0.41 +0.8 2,178 + GFF5375 0.41 -2.5 2,178 + GFF5375 0.41 -0.7 2,179 - GFF5375 0.41 +0.8 2,179 - GFF5375 0.41 -2.6 2,694 + GFF5375 0.72 -3.5 2,694 + GFF5375 0.72 +1.5 2,694 + GFF5375 0.72 -0.2 2,695 - GFF5375 0.73 -1.3 2,695 - GFF5375 0.73 -1.4 2,695 - GFF5375 0.73 -0.1 2,695 - GFF5375 0.73 -0.3 2,695 - GFF5375 0.73 +0.2 2,784 + GFF5375 0.78 -1.3 2,784 + GFF5375 0.78 -1.3 2,784 + GFF5375 0.78 +0.5 2,784 + GFF5375 0.78 -3.3 2,784 + GFF5375 0.78 -1.4 2,784 + GFF5375 0.78 +1.3 2,785 - GFF5375 0.78 -0.7 2,785 - GFF5375 0.78 -0.0 2,785 - GFF5375 0.78 +0.7 2,785 - GFF5375 0.78 -2.0 2,785 - GFF5375 0.78 +0.3 2,785 - GFF5375 0.78 -3.1 2,785 - GFF5375 0.78 +1.0 2,785 - GFF5375 0.78 -1.2 2,785 - GFF5375 0.78 -1.0 2,785 - GFF5375 0.78 +1.3 2,785 - GFF5375 0.78 +0.0 2,785 - GFF5375 0.78 -1.3 2,800 - GFF5375 0.79 -1.0 2,800 - GFF5375 0.79 -1.6 2,997 + +0.5 2,997 + +1.3 2,998 - +0.0 3,084 + -2.9 3,084 + -0.0 3,084 + -0.7 3,085 - +1.8 3,085 - +0.3 3,085 - -0.9 3,085 - -2.4 3,085 - +0.9 3,085 - +1.9 3,085 - -3.1 3,085 - -0.6 3,085 - -2.0 3,085 - +0.1 3,093 + -0.5 3,093 + +1.3 3,093 + -3.6 3,093 + -0.9 3,093 + -0.7 3,093 + -2.0 3,093 + -2.7 3,093 + -3.1 3,093 + +0.1 3,093 + +2.5 3,094 - -0.7 3,094 - -3.1 3,094 - -0.0 3,094 - +2.2 3,094 - +0.3 3,094 - +0.3 3,094 - -2.8 3,094 - +0.3 3,094 - +0.2 3,245 - -0.3 3,245 - -0.5 3,547 + GFF5376 0.44 -0.9 3,547 + GFF5376 0.44 +0.1 3,548 - GFF5376 0.44 +1.7 3,548 - GFF5376 0.44 +0.7 3,548 - GFF5376 0.44 +1.7 3,639 + GFF5376 0.55 -0.7 3,640 - GFF5376 0.56 -0.9 3,640 - GFF5376 0.56 -2.6 3,964 + -0.5 3,964 + +0.3 3,964 + -2.3 3,965 - -1.7 3,965 - +1.2 3,965 - -0.6 3,965 - -0.7 3,965 - +1.8 3,965 - +0.3 4,043 - +0.2 4,262 + GFF5377 0.28 +0.5 4,262 + GFF5377 0.28 -1.3 4,262 + GFF5377 0.28 -0.8 4,262 + GFF5377 0.28 +0.9 4,263 - GFF5377 0.28 +1.5 4,263 - GFF5377 0.28 +0.6 4,263 - GFF5377 0.28 -1.4 4,263 - GFF5377 0.28 -1.5 4,263 - GFF5377 0.28 +1.6 4,268 + GFF5377 0.29 +0.8 4,268 + GFF5377 0.29 -0.8 4,268 + GFF5377 0.29 +0.3 4,268 + GFF5377 0.29 +0.8 4,268 + GFF5377 0.29 -1.6 4,268 + GFF5377 0.29 +2.1 4,269 - GFF5377 0.29 +0.6 4,451 + GFF5377 0.58 -1.4 4,451 + GFF5377 0.58 +1.0 4,451 + GFF5377 0.58 +0.2 4,452 - GFF5377 0.58 -0.3 4,452 - GFF5377 0.58 -2.0 4,452 - GFF5377 0.58 +0.1 4,452 - GFF5377 0.58 -0.3 4,452 - GFF5377 0.58 -0.1 4,452 - GFF5377 0.58 -2.7 4,452 - GFF5377 0.58 -0.2 4,452 - GFF5377 0.58 +0.6 4,452 - GFF5377 0.58 -0.3 4,452 - GFF5377 0.58 -1.7 4,488 - GFF5377 0.64 -0.9 4,499 + GFF5377 0.66 -3.5 4,499 + GFF5377 0.66 -2.2 4,499 + GFF5377 0.66 +0.9 4,499 + GFF5377 0.66 +1.1 4,499 + GFF5377 0.66 +1.0 4,499 + GFF5377 0.66 -2.3 4,499 + GFF5377 0.66 +0.4 4,499 + GFF5377 0.66 +0.3 4,499 + GFF5377 0.66 -0.3 4,500 - GFF5377 0.66 -0.0 4,500 - GFF5377 0.66 +1.0 4,500 - GFF5377 0.66 -1.4 4,500 - GFF5377 0.66 +1.3 4,500 - GFF5377 0.66 +0.7 4,500 - GFF5377 0.66 -0.3 4,500 - GFF5377 0.66 -0.4 4,500 - GFF5377 0.66 +0.9 4,500 - GFF5377 0.66 +0.5 4,500 - GFF5377 0.66 -0.5 4,500 - GFF5377 0.66 -1.0 4,500 - GFF5377 0.66 -1.0 4,500 - GFF5377 0.66 -0.4 4,500 - GFF5377 0.66 +0.6 4,500 - GFF5377 0.66 -0.3 4,500 - GFF5377 0.66 -0.9 4,500 - GFF5377 0.66 -0.9 4,500 - GFF5377 0.66 -0.0 4,500 - GFF5377 0.66 +0.6 4,500 - GFF5377 0.66 -2.5 4,604 + GFF5377 0.82 -0.5 4,605 - GFF5377 0.82 -0.5 4,605 - GFF5377 0.82 -1.6 4,694 + -2.7 4,695 - -3.5 4,941 + +1.1 4,941 + -0.0 4,941 + -0.6 4,941 + -1.7 4,942 - -0.5 4,942 - -2.5 4,942 - -1.4 4,942 - +1.0 4,943 + +0.7 4,943 + -0.7 4,943 + +0.2 4,943 + +0.8 4,943 + -1.2 4,943 + -1.3 4,943 + +3.3 4,943 + +1.8 4,943 + -0.7 4,943 + -0.5 4,943 + +0.8 4,943 + -1.3 4,943 + +1.9 4,943 + +0.7 4,944 - +0.3 4,944 - -3.0 4,944 - +1.1 4,944 - -0.4 4,944 - -0.3 4,944 - -1.5 4,944 - +1.0 4,944 - -0.9 4,968 + -2.3 4,968 + -3.5 4,968 + -2.2 4,969 - +2.0 4,969 - +1.1 4,969 - +0.6
Or see this region's nucleotide sequence