Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5334 and GFF5335 overlap by 4 nucleotides GFF5335 and GFF5336 are separated by 38 nucleotides GFF5336 and GFF5337 are separated by 35 nucleotides GFF5337 and GFF5338 are separated by 165 nucleotides
GFF5334 - Phospholipid ABC transporter ATP-binding protein MlaF, at 215,435 to 216,262
GFF5334
GFF5335 - Phospholipid ABC transporter permease protein MlaE, at 216,259 to 217,041
GFF5335
GFF5336 - Phospholipid ABC transporter substrate-binding protein MlaD, at 217,080 to 217,571
GFF5336
GFF5337 - Outer-membrane-phospholipid-binding lipoprotein MlaA, at 217,607 to 218,314
GFF5337
GFF5338 - Phospholipid ABC transporter shuttle protein MlaC, at 218,480 to 219,136
GFF5338
Position (kb) 217
218 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 216.323 kb on - strand at 216.418 kb on + strand, within GFF5335 at 216.418 kb on + strand, within GFF5335 at 216.418 kb on + strand, within GFF5335 at 216.418 kb on + strand, within GFF5335 at 216.418 kb on + strand, within GFF5335 at 216.419 kb on - strand, within GFF5335 at 216.419 kb on - strand, within GFF5335 at 216.419 kb on - strand, within GFF5335 at 216.419 kb on - strand, within GFF5335 at 216.428 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.484 kb on + strand, within GFF5335 at 216.484 kb on + strand, within GFF5335 at 216.484 kb on + strand, within GFF5335 at 216.484 kb on + strand, within GFF5335 at 216.484 kb on + strand, within GFF5335 at 216.485 kb on - strand, within GFF5335 at 216.485 kb on - strand, within GFF5335 at 216.485 kb on - strand, within GFF5335 at 216.485 kb on - strand, within GFF5335 at 216.499 kb on + strand, within GFF5335 at 216.500 kb on - strand, within GFF5335 at 216.598 kb on - strand, within GFF5335 at 216.770 kb on - strand, within GFF5335 at 216.770 kb on - strand, within GFF5335 at 216.770 kb on - strand, within GFF5335 at 216.770 kb on - strand, within GFF5335 at 216.922 kb on + strand, within GFF5335 at 216.922 kb on + strand, within GFF5335 at 216.922 kb on + strand, within GFF5335 at 216.922 kb on + strand, within GFF5335 at 216.922 kb on + strand, within GFF5335 at 216.923 kb on - strand, within GFF5335 at 216.923 kb on - strand, within GFF5335 at 216.923 kb on - strand, within GFF5335 at 216.923 kb on - strand, within GFF5335 at 217.035 kb on + strand at 217.036 kb on - strand at 217.036 kb on - strand at 217.036 kb on - strand at 217.039 kb on + strand at 217.039 kb on + strand at 217.039 kb on + strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.065 kb on + strand at 217.197 kb on + strand, within GFF5336 at 217.197 kb on + strand, within GFF5336 at 217.197 kb on + strand, within GFF5336 at 217.198 kb on - strand, within GFF5336 at 217.198 kb on - strand, within GFF5336 at 217.198 kb on - strand, within GFF5336 at 217.198 kb on - strand, within GFF5336 at 217.347 kb on + strand, within GFF5336 at 217.348 kb on - strand, within GFF5336 at 217.348 kb on - strand, within GFF5336 at 217.407 kb on + strand, within GFF5336 at 217.407 kb on + strand, within GFF5336 at 217.407 kb on + strand, within GFF5336 at 217.407 kb on + strand, within GFF5336 at 217.407 kb on + strand, within GFF5336 at 217.407 kb on + strand, within GFF5336 at 217.407 kb on + strand, within GFF5336 at 217.407 kb on + strand, within GFF5336 at 217.407 kb on + strand, within GFF5336 at 217.408 kb on - strand, within GFF5336 at 217.408 kb on - strand, within GFF5336 at 217.408 kb on - strand, within GFF5336 at 217.408 kb on - strand, within GFF5336 at 217.408 kb on - strand, within GFF5336 at 217.408 kb on - strand, within GFF5336 at 217.408 kb on - strand, within GFF5336 at 217.408 kb on - strand, within GFF5336 at 217.408 kb on - strand, within GFF5336 at 217.408 kb on - strand, within GFF5336 at 217.408 kb on - strand, within GFF5336 at 217.515 kb on + strand, within GFF5336 at 217.515 kb on + strand, within GFF5336 at 217.515 kb on + strand, within GFF5336 at 217.516 kb on - strand, within GFF5336 at 217.516 kb on - strand, within GFF5336 at 217.516 kb on - strand, within GFF5336 at 217.516 kb on - strand, within GFF5336 at 217.516 kb on - strand, within GFF5336 at 217.516 kb on - strand, within GFF5336 at 217.535 kb on + strand at 217.535 kb on + strand at 217.535 kb on + strand at 217.535 kb on + strand at 217.535 kb on + strand at 217.535 kb on + strand at 217.536 kb on - strand at 217.536 kb on - strand at 217.536 kb on - strand at 217.536 kb on - strand at 217.536 kb on - strand at 217.536 kb on - strand at 217.536 kb on - strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.538 kb on + strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.539 kb on - strand at 217.585 kb on + strand at 217.586 kb on - strand at 217.620 kb on + strand at 217.620 kb on + strand at 217.620 kb on + strand at 217.620 kb on + strand at 217.620 kb on + strand at 217.621 kb on - strand at 217.621 kb on - strand at 217.621 kb on - strand at 217.621 kb on - strand at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.788 kb on + strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.789 kb on - strand, within GFF5337 at 217.807 kb on + strand, within GFF5337 at 218.034 kb on - strand, within GFF5337 at 218.099 kb on + strand, within GFF5337 at 218.100 kb on - strand, within GFF5337 at 218.100 kb on - strand, within GFF5337 at 218.100 kb on - strand, within GFF5337 at 218.183 kb on + strand, within GFF5337 at 218.183 kb on + strand, within GFF5337 at 218.184 kb on - strand, within GFF5337 at 218.184 kb on - strand, within GFF5337 at 218.184 kb on - strand, within GFF5337 at 218.228 kb on + strand, within GFF5337 at 218.228 kb on + strand, within GFF5337 at 218.228 kb on + strand, within GFF5337 at 218.228 kb on + strand, within GFF5337 at 218.228 kb on + strand, within GFF5337 at 218.228 kb on + strand, within GFF5337 at 218.229 kb on - strand, within GFF5337 at 218.229 kb on - strand, within GFF5337 at 218.229 kb on - strand, within GFF5337 at 218.229 kb on - strand, within GFF5337 at 218.229 kb on - strand, within GFF5337 at 218.229 kb on - strand, within GFF5337 at 218.276 kb on + strand at 218.276 kb on + strand at 218.276 kb on + strand at 218.276 kb on + strand at 218.276 kb on + strand at 218.276 kb on + strand at 218.276 kb on + strand at 218.276 kb on + strand at 218.276 kb on + strand at 218.277 kb on - strand at 218.277 kb on - strand at 218.277 kb on - strand at 218.277 kb on - strand at 218.277 kb on - strand at 218.277 kb on - strand at 218.277 kb on - strand at 218.312 kb on + strand at 218.313 kb on - strand at 218.318 kb on + strand at 218.318 kb on + strand at 218.318 kb on + strand at 218.318 kb on + strand at 218.318 kb on + strand at 218.318 kb on + strand at 218.319 kb on - strand at 218.319 kb on - strand at 218.319 kb on - strand at 218.319 kb on - strand at 218.319 kb on - strand at 218.319 kb on - strand at 218.319 kb on - strand at 218.319 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 216,323 - -3.1 216,418 + GFF5335 0.20 -1.2 216,418 + GFF5335 0.20 +0.1 216,418 + GFF5335 0.20 +0.7 216,418 + GFF5335 0.20 -3.0 216,418 + GFF5335 0.20 -0.7 216,419 - GFF5335 0.20 +1.9 216,419 - GFF5335 0.20 -2.1 216,419 - GFF5335 0.20 +0.5 216,419 - GFF5335 0.20 -2.5 216,428 + GFF5335 0.22 -2.8 216,481 + GFF5335 0.28 +2.1 216,481 + GFF5335 0.28 -3.9 216,481 + GFF5335 0.28 -2.8 216,481 + GFF5335 0.28 -2.6 216,481 + GFF5335 0.28 -0.6 216,481 + GFF5335 0.28 +1.1 216,481 + GFF5335 0.28 -1.3 216,481 + GFF5335 0.28 -2.4 216,481 + GFF5335 0.28 +1.1 216,481 + GFF5335 0.28 +0.4 216,481 + GFF5335 0.28 -0.3 216,481 + GFF5335 0.28 +0.1 216,481 + GFF5335 0.28 +0.4 216,481 + GFF5335 0.28 +0.3 216,482 - GFF5335 0.28 +0.1 216,482 - GFF5335 0.28 -1.8 216,482 - GFF5335 0.28 +2.4 216,482 - GFF5335 0.28 -3.0 216,482 - GFF5335 0.28 -1.1 216,482 - GFF5335 0.28 -0.2 216,482 - GFF5335 0.28 +0.1 216,482 - GFF5335 0.28 -2.4 216,482 - GFF5335 0.28 +2.4 216,482 - GFF5335 0.28 +1.1 216,484 + GFF5335 0.29 -2.9 216,484 + GFF5335 0.29 -0.3 216,484 + GFF5335 0.29 -0.9 216,484 + GFF5335 0.29 +1.0 216,484 + GFF5335 0.29 +1.2 216,485 - GFF5335 0.29 -1.1 216,485 - GFF5335 0.29 -3.2 216,485 - GFF5335 0.29 -1.8 216,485 - GFF5335 0.29 -2.6 216,499 + GFF5335 0.31 -1.5 216,500 - GFF5335 0.31 -0.0 216,598 - GFF5335 0.43 +1.7 216,770 - GFF5335 0.65 +0.2 216,770 - GFF5335 0.65 +0.2 216,770 - GFF5335 0.65 -0.8 216,770 - GFF5335 0.65 -2.1 216,922 + GFF5335 0.85 -4.1 216,922 + GFF5335 0.85 -3.0 216,922 + GFF5335 0.85 -1.1 216,922 + GFF5335 0.85 -2.1 216,922 + GFF5335 0.85 -0.2 216,923 - GFF5335 0.85 -0.5 216,923 - GFF5335 0.85 -0.7 216,923 - GFF5335 0.85 -4.5 216,923 - GFF5335 0.85 -2.5 217,035 + +2.5 217,036 - -0.2 217,036 - +0.5 217,036 - -0.9 217,039 + +0.8 217,039 + -1.2 217,039 + -1.4 217,040 - -1.4 217,040 - +1.5 217,040 - -0.6 217,040 - +0.1 217,040 - +0.1 217,040 - -1.9 217,040 - +0.2 217,040 - -0.0 217,040 - -1.2 217,040 - -0.0 217,040 - -2.6 217,065 + +1.0 217,197 + GFF5336 0.24 +0.9 217,197 + GFF5336 0.24 -2.3 217,197 + GFF5336 0.24 +1.3 217,198 - GFF5336 0.24 -0.5 217,198 - GFF5336 0.24 -0.5 217,198 - GFF5336 0.24 +0.2 217,198 - GFF5336 0.24 +1.3 217,347 + GFF5336 0.54 +0.4 217,348 - GFF5336 0.54 -0.9 217,348 - GFF5336 0.54 -0.1 217,407 + GFF5336 0.66 -3.5 217,407 + GFF5336 0.66 -0.2 217,407 + GFF5336 0.66 +1.2 217,407 + GFF5336 0.66 -0.7 217,407 + GFF5336 0.66 -3.1 217,407 + GFF5336 0.66 +3.3 217,407 + GFF5336 0.66 -3.1 217,407 + GFF5336 0.66 -1.6 217,407 + GFF5336 0.66 -1.1 217,408 - GFF5336 0.67 +0.5 217,408 - GFF5336 0.67 -3.2 217,408 - GFF5336 0.67 -2.2 217,408 - GFF5336 0.67 -1.1 217,408 - GFF5336 0.67 -0.4 217,408 - GFF5336 0.67 -1.9 217,408 - GFF5336 0.67 -0.7 217,408 - GFF5336 0.67 -1.9 217,408 - GFF5336 0.67 +0.5 217,408 - GFF5336 0.67 -1.5 217,408 - GFF5336 0.67 -0.1 217,515 + GFF5336 0.88 -1.1 217,515 + GFF5336 0.88 +1.8 217,515 + GFF5336 0.88 +0.9 217,516 - GFF5336 0.89 -0.0 217,516 - GFF5336 0.89 -0.5 217,516 - GFF5336 0.89 -0.8 217,516 - GFF5336 0.89 -0.9 217,516 - GFF5336 0.89 -4.2 217,516 - GFF5336 0.89 +0.7 217,535 + -0.7 217,535 + -1.5 217,535 + -3.4 217,535 + -3.2 217,535 + +0.7 217,535 + -3.9 217,536 - +1.7 217,536 - -0.2 217,536 - +0.2 217,536 - +4.2 217,536 - -0.2 217,536 - +0.5 217,536 - -3.2 217,538 + +0.4 217,538 + -1.0 217,538 + +0.1 217,538 + +2.0 217,538 + -1.1 217,538 + -0.2 217,538 + -0.3 217,538 + +0.4 217,538 + +1.2 217,538 + -0.2 217,538 + -2.6 217,539 - -0.6 217,539 - -1.9 217,539 - +0.6 217,539 - -1.4 217,539 - -3.5 217,539 - -4.4 217,539 - +2.2 217,539 - +0.8 217,539 - -2.4 217,539 - -2.2 217,539 - +0.8 217,539 - -1.1 217,539 - +1.4 217,539 - +0.1 217,539 - +1.5 217,539 - -0.2 217,585 + +1.1 217,586 - +1.5 217,620 + +1.5 217,620 + -2.4 217,620 + +3.1 217,620 + -0.7 217,620 + -0.2 217,621 - -1.7 217,621 - -0.3 217,621 - -0.2 217,621 - +1.5 217,788 + GFF5337 0.26 +0.6 217,788 + GFF5337 0.26 -2.0 217,788 + GFF5337 0.26 -0.5 217,788 + GFF5337 0.26 -0.0 217,788 + GFF5337 0.26 -1.6 217,788 + GFF5337 0.26 +1.9 217,788 + GFF5337 0.26 -1.2 217,788 + GFF5337 0.26 -0.8 217,788 + GFF5337 0.26 -1.1 217,789 - GFF5337 0.26 +0.5 217,789 - GFF5337 0.26 -2.4 217,789 - GFF5337 0.26 +0.5 217,789 - GFF5337 0.26 -2.0 217,789 - GFF5337 0.26 +1.0 217,789 - GFF5337 0.26 +0.5 217,789 - GFF5337 0.26 -0.2 217,789 - GFF5337 0.26 -1.1 217,807 + GFF5337 0.28 +0.1 218,034 - GFF5337 0.60 +0.1 218,099 + GFF5337 0.69 -1.1 218,100 - GFF5337 0.70 +1.0 218,100 - GFF5337 0.70 +0.8 218,100 - GFF5337 0.70 +0.1 218,183 + GFF5337 0.81 -1.1 218,183 + GFF5337 0.81 -1.2 218,184 - GFF5337 0.81 +1.1 218,184 - GFF5337 0.81 +0.9 218,184 - GFF5337 0.81 +0.8 218,228 + GFF5337 0.88 -1.5 218,228 + GFF5337 0.88 -1.5 218,228 + GFF5337 0.88 -1.1 218,228 + GFF5337 0.88 -0.2 218,228 + GFF5337 0.88 -2.3 218,228 + GFF5337 0.88 -0.7 218,229 - GFF5337 0.88 -0.1 218,229 - GFF5337 0.88 -1.2 218,229 - GFF5337 0.88 -3.0 218,229 - GFF5337 0.88 +0.8 218,229 - GFF5337 0.88 -3.9 218,229 - GFF5337 0.88 -1.6 218,276 + +2.7 218,276 + -3.3 218,276 + +0.9 218,276 + +0.9 218,276 + -0.6 218,276 + +0.1 218,276 + +1.1 218,276 + -3.3 218,276 + -0.5 218,277 - +1.2 218,277 - -3.4 218,277 - +0.4 218,277 - -1.2 218,277 - +0.1 218,277 - +1.2 218,277 - +2.4 218,312 + +0.2 218,313 - +0.5 218,318 + -1.5 218,318 + +0.6 218,318 + -0.6 218,318 + +1.3 218,318 + -2.7 218,318 + +0.4 218,319 - +0.1 218,319 - +0.2 218,319 - +1.6 218,319 - -1.3 218,319 - +2.0 218,319 - -1.8 218,319 - -2.9 218,319 - +0.3
Or see this region's nucleotide sequence