Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5333 and GFF5334 are separated by 101 nucleotides GFF5334 and GFF5335 overlap by 4 nucleotides GFF5335 and GFF5336 are separated by 38 nucleotides
GFF5333 - Glutamate synthase [NADPH] small chain (EC 1.4.1.13), at 213,855 to 215,333
GFF5333
GFF5334 - Phospholipid ABC transporter ATP-binding protein MlaF, at 215,435 to 216,262
GFF5334
GFF5335 - Phospholipid ABC transporter permease protein MlaE, at 216,259 to 217,041
GFF5335
GFF5336 - Phospholipid ABC transporter substrate-binding protein MlaD, at 217,080 to 217,571
GFF5336
Position (kb) 215
216
217 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 214.891 kb on - strand, within GFF5333 at 215.190 kb on + strand at 215.191 kb on - strand at 215.191 kb on - strand at 215.466 kb on + strand at 215.466 kb on + strand at 215.466 kb on + strand at 215.467 kb on - strand at 215.467 kb on - strand at 215.681 kb on + strand, within GFF5334 at 215.681 kb on + strand, within GFF5334 at 215.682 kb on - strand, within GFF5334 at 215.942 kb on + strand, within GFF5334 at 215.942 kb on + strand, within GFF5334 at 215.942 kb on + strand, within GFF5334 at 215.942 kb on + strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 216.323 kb on - strand at 216.418 kb on + strand, within GFF5335 at 216.418 kb on + strand, within GFF5335 at 216.418 kb on + strand, within GFF5335 at 216.418 kb on + strand, within GFF5335 at 216.418 kb on + strand, within GFF5335 at 216.419 kb on - strand, within GFF5335 at 216.419 kb on - strand, within GFF5335 at 216.419 kb on - strand, within GFF5335 at 216.419 kb on - strand, within GFF5335 at 216.428 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.481 kb on + strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.482 kb on - strand, within GFF5335 at 216.484 kb on + strand, within GFF5335 at 216.484 kb on + strand, within GFF5335 at 216.484 kb on + strand, within GFF5335 at 216.484 kb on + strand, within GFF5335 at 216.484 kb on + strand, within GFF5335 at 216.485 kb on - strand, within GFF5335 at 216.485 kb on - strand, within GFF5335 at 216.485 kb on - strand, within GFF5335 at 216.485 kb on - strand, within GFF5335 at 216.499 kb on + strand, within GFF5335 at 216.500 kb on - strand, within GFF5335 at 216.598 kb on - strand, within GFF5335 at 216.770 kb on - strand, within GFF5335 at 216.770 kb on - strand, within GFF5335 at 216.770 kb on - strand, within GFF5335 at 216.770 kb on - strand, within GFF5335 at 216.922 kb on + strand, within GFF5335 at 216.922 kb on + strand, within GFF5335 at 216.922 kb on + strand, within GFF5335 at 216.922 kb on + strand, within GFF5335 at 216.922 kb on + strand, within GFF5335 at 216.923 kb on - strand, within GFF5335 at 216.923 kb on - strand, within GFF5335 at 216.923 kb on - strand, within GFF5335 at 216.923 kb on - strand, within GFF5335 at 217.035 kb on + strand at 217.036 kb on - strand at 217.036 kb on - strand at 217.036 kb on - strand at 217.039 kb on + strand at 217.039 kb on + strand at 217.039 kb on + strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.040 kb on - strand at 217.065 kb on + strand at 217.197 kb on + strand, within GFF5336 at 217.197 kb on + strand, within GFF5336 at 217.197 kb on + strand, within GFF5336 at 217.198 kb on - strand, within GFF5336 at 217.198 kb on - strand, within GFF5336 at 217.198 kb on - strand, within GFF5336 at 217.198 kb on - strand, within GFF5336
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 214,891 - GFF5333 0.70 -1.8 215,190 + -1.1 215,191 - -3.4 215,191 - -1.4 215,466 + +0.4 215,466 + -0.8 215,466 + +1.3 215,467 - +2.3 215,467 - +1.3 215,681 + GFF5334 0.30 -0.5 215,681 + GFF5334 0.30 -2.6 215,682 - GFF5334 0.30 +2.1 215,942 + GFF5334 0.61 -4.3 215,942 + GFF5334 0.61 -1.1 215,942 + GFF5334 0.61 -4.1 215,942 + GFF5334 0.61 -1.1 215,943 - GFF5334 0.61 -2.6 215,943 - GFF5334 0.61 -0.6 215,943 - GFF5334 0.61 -1.4 215,943 - GFF5334 0.61 -1.5 215,943 - GFF5334 0.61 -2.8 215,943 - GFF5334 0.61 -0.8 215,943 - GFF5334 0.61 -0.9 215,943 - GFF5334 0.61 -1.1 215,943 - GFF5334 0.61 -1.9 216,323 - -3.1 216,418 + GFF5335 0.20 -1.2 216,418 + GFF5335 0.20 +0.1 216,418 + GFF5335 0.20 +0.7 216,418 + GFF5335 0.20 -3.0 216,418 + GFF5335 0.20 -0.7 216,419 - GFF5335 0.20 +1.9 216,419 - GFF5335 0.20 -2.1 216,419 - GFF5335 0.20 +0.5 216,419 - GFF5335 0.20 -2.5 216,428 + GFF5335 0.22 -2.8 216,481 + GFF5335 0.28 +2.1 216,481 + GFF5335 0.28 -3.9 216,481 + GFF5335 0.28 -2.8 216,481 + GFF5335 0.28 -2.6 216,481 + GFF5335 0.28 -0.6 216,481 + GFF5335 0.28 +1.1 216,481 + GFF5335 0.28 -1.3 216,481 + GFF5335 0.28 -2.4 216,481 + GFF5335 0.28 +1.1 216,481 + GFF5335 0.28 +0.4 216,481 + GFF5335 0.28 -0.3 216,481 + GFF5335 0.28 +0.1 216,481 + GFF5335 0.28 +0.4 216,481 + GFF5335 0.28 +0.3 216,482 - GFF5335 0.28 +0.1 216,482 - GFF5335 0.28 -1.8 216,482 - GFF5335 0.28 +2.4 216,482 - GFF5335 0.28 -3.0 216,482 - GFF5335 0.28 -1.1 216,482 - GFF5335 0.28 -0.2 216,482 - GFF5335 0.28 +0.1 216,482 - GFF5335 0.28 -2.4 216,482 - GFF5335 0.28 +2.4 216,482 - GFF5335 0.28 +1.1 216,484 + GFF5335 0.29 -2.9 216,484 + GFF5335 0.29 -0.3 216,484 + GFF5335 0.29 -0.9 216,484 + GFF5335 0.29 +1.0 216,484 + GFF5335 0.29 +1.2 216,485 - GFF5335 0.29 -1.1 216,485 - GFF5335 0.29 -3.2 216,485 - GFF5335 0.29 -1.8 216,485 - GFF5335 0.29 -2.6 216,499 + GFF5335 0.31 -1.5 216,500 - GFF5335 0.31 -0.0 216,598 - GFF5335 0.43 +1.7 216,770 - GFF5335 0.65 +0.2 216,770 - GFF5335 0.65 +0.2 216,770 - GFF5335 0.65 -0.8 216,770 - GFF5335 0.65 -2.1 216,922 + GFF5335 0.85 -4.1 216,922 + GFF5335 0.85 -3.0 216,922 + GFF5335 0.85 -1.1 216,922 + GFF5335 0.85 -2.1 216,922 + GFF5335 0.85 -0.2 216,923 - GFF5335 0.85 -0.5 216,923 - GFF5335 0.85 -0.7 216,923 - GFF5335 0.85 -4.5 216,923 - GFF5335 0.85 -2.5 217,035 + +2.5 217,036 - -0.2 217,036 - +0.5 217,036 - -0.9 217,039 + +0.8 217,039 + -1.2 217,039 + -1.4 217,040 - -1.4 217,040 - +1.5 217,040 - -0.6 217,040 - +0.1 217,040 - +0.1 217,040 - -1.9 217,040 - +0.2 217,040 - -0.0 217,040 - -1.2 217,040 - -0.0 217,040 - -2.6 217,065 + +1.0 217,197 + GFF5336 0.24 +0.9 217,197 + GFF5336 0.24 -2.3 217,197 + GFF5336 0.24 +1.3 217,198 - GFF5336 0.24 -0.5 217,198 - GFF5336 0.24 -0.5 217,198 - GFF5336 0.24 +0.2 217,198 - GFF5336 0.24 +1.3
Or see this region's nucleotide sequence