Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5332 and GFF5333 are separated by 34 nucleotides GFF5333 and GFF5334 are separated by 101 nucleotides GFF5334 and GFF5335 overlap by 4 nucleotides
GFF5332 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 209,063 to 213,820
GFF5332
GFF5333 - Glutamate synthase [NADPH] small chain (EC 1.4.1.13), at 213,855 to 215,333
GFF5333
GFF5334 - Phospholipid ABC transporter ATP-binding protein MlaF, at 215,435 to 216,262
GFF5334
GFF5335 - Phospholipid ABC transporter permease protein MlaE, at 216,259 to 217,041
GFF5335
Position (kb) 213
214
215
216 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 213.116 kb on + strand, within GFF5332 at 213.116 kb on + strand, within GFF5332 at 213.117 kb on - strand, within GFF5332 at 213.140 kb on + strand, within GFF5332 at 213.141 kb on - strand, within GFF5332 at 213.141 kb on - strand, within GFF5332 at 213.242 kb on + strand, within GFF5332 at 213.242 kb on + strand, within GFF5332 at 213.243 kb on - strand, within GFF5332 at 213.243 kb on - strand, within GFF5332 at 213.266 kb on + strand, within GFF5332 at 213.266 kb on + strand, within GFF5332 at 213.266 kb on + strand, within GFF5332 at 213.266 kb on + strand, within GFF5332 at 213.266 kb on + strand, within GFF5332 at 213.266 kb on + strand, within GFF5332 at 213.266 kb on + strand, within GFF5332 at 213.267 kb on - strand, within GFF5332 at 213.267 kb on - strand, within GFF5332 at 213.267 kb on - strand, within GFF5332 at 213.267 kb on - strand, within GFF5332 at 213.267 kb on - strand, within GFF5332 at 213.267 kb on - strand, within GFF5332 at 213.356 kb on + strand at 213.356 kb on + strand at 213.356 kb on + strand at 213.356 kb on + strand at 213.356 kb on + strand at 213.357 kb on - strand at 213.357 kb on - strand at 213.357 kb on - strand at 213.357 kb on - strand at 213.357 kb on - strand at 213.357 kb on - strand at 213.441 kb on - strand at 213.441 kb on - strand at 213.689 kb on + strand at 213.689 kb on + strand at 213.689 kb on + strand at 213.689 kb on + strand at 213.690 kb on - strand at 213.690 kb on - strand at 213.690 kb on - strand at 213.832 kb on + strand at 213.832 kb on + strand at 213.832 kb on + strand at 213.903 kb on + strand at 213.903 kb on + strand at 213.903 kb on + strand at 213.903 kb on + strand at 213.903 kb on + strand at 213.903 kb on + strand at 213.904 kb on - strand at 213.904 kb on - strand at 213.904 kb on - strand at 213.904 kb on - strand at 213.904 kb on - strand at 213.904 kb on - strand at 213.933 kb on + strand at 213.933 kb on + strand at 213.933 kb on + strand at 213.934 kb on - strand at 213.934 kb on - strand at 213.976 kb on + strand at 213.976 kb on + strand at 213.976 kb on + strand at 213.977 kb on - strand at 213.977 kb on - strand at 213.977 kb on - strand at 213.977 kb on - strand at 213.977 kb on - strand at 213.977 kb on - strand at 214.068 kb on + strand, within GFF5333 at 214.069 kb on - strand, within GFF5333 at 214.405 kb on - strand, within GFF5333 at 214.891 kb on - strand, within GFF5333 at 215.190 kb on + strand at 215.191 kb on - strand at 215.191 kb on - strand at 215.466 kb on + strand at 215.466 kb on + strand at 215.466 kb on + strand at 215.467 kb on - strand at 215.467 kb on - strand at 215.681 kb on + strand, within GFF5334 at 215.681 kb on + strand, within GFF5334 at 215.682 kb on - strand, within GFF5334 at 215.942 kb on + strand, within GFF5334 at 215.942 kb on + strand, within GFF5334 at 215.942 kb on + strand, within GFF5334 at 215.942 kb on + strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 215.943 kb on - strand, within GFF5334 at 216.323 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 213,116 + GFF5332 0.85 -0.0 213,116 + GFF5332 0.85 +0.1 213,117 - GFF5332 0.85 -1.9 213,140 + GFF5332 0.86 -0.8 213,141 - GFF5332 0.86 -0.5 213,141 - GFF5332 0.86 +3.3 213,242 + GFF5332 0.88 -0.2 213,242 + GFF5332 0.88 -0.7 213,243 - GFF5332 0.88 +2.1 213,243 - GFF5332 0.88 -3.0 213,266 + GFF5332 0.88 -3.4 213,266 + GFF5332 0.88 +0.1 213,266 + GFF5332 0.88 -0.9 213,266 + GFF5332 0.88 -1.2 213,266 + GFF5332 0.88 -2.2 213,266 + GFF5332 0.88 -1.6 213,266 + GFF5332 0.88 -2.8 213,267 - GFF5332 0.88 +1.6 213,267 - GFF5332 0.88 -1.2 213,267 - GFF5332 0.88 -0.5 213,267 - GFF5332 0.88 -2.6 213,267 - GFF5332 0.88 -0.2 213,267 - GFF5332 0.88 +0.3 213,356 + -1.8 213,356 + +0.5 213,356 + -1.1 213,356 + +0.1 213,356 + -0.2 213,357 - +1.1 213,357 - +0.1 213,357 - +4.1 213,357 - -2.4 213,357 - -0.7 213,357 - -0.5 213,441 - -1.7 213,441 - -0.5 213,689 + -1.8 213,689 + -3.4 213,689 + -3.2 213,689 + -0.1 213,690 - -2.1 213,690 - -2.1 213,690 - -3.1 213,832 + +1.6 213,832 + +1.1 213,832 + -0.3 213,903 + -2.1 213,903 + -2.3 213,903 + -2.6 213,903 + -0.2 213,903 + -1.6 213,903 + -3.9 213,904 - +0.1 213,904 - -2.5 213,904 - -2.9 213,904 - -1.9 213,904 - -4.2 213,904 - -1.4 213,933 + -1.6 213,933 + -1.1 213,933 + -0.6 213,934 - -2.9 213,934 - -1.6 213,976 + +0.5 213,976 + -4.1 213,976 + -1.8 213,977 - -1.2 213,977 - +0.1 213,977 - +0.5 213,977 - -1.8 213,977 - -2.5 213,977 - -3.0 214,068 + GFF5333 0.14 -3.1 214,069 - GFF5333 0.14 +0.1 214,405 - GFF5333 0.37 +0.5 214,891 - GFF5333 0.70 -1.8 215,190 + -1.1 215,191 - -3.4 215,191 - -1.4 215,466 + +0.4 215,466 + -0.8 215,466 + +1.3 215,467 - +2.3 215,467 - +1.3 215,681 + GFF5334 0.30 -0.5 215,681 + GFF5334 0.30 -2.6 215,682 - GFF5334 0.30 +2.1 215,942 + GFF5334 0.61 -4.3 215,942 + GFF5334 0.61 -1.1 215,942 + GFF5334 0.61 -4.1 215,942 + GFF5334 0.61 -1.1 215,943 - GFF5334 0.61 -2.6 215,943 - GFF5334 0.61 -0.6 215,943 - GFF5334 0.61 -1.4 215,943 - GFF5334 0.61 -1.5 215,943 - GFF5334 0.61 -2.8 215,943 - GFF5334 0.61 -0.8 215,943 - GFF5334 0.61 -0.9 215,943 - GFF5334 0.61 -1.1 215,943 - GFF5334 0.61 -1.9 216,323 - -3.1
Or see this region's nucleotide sequence