Strain Fitness in Variovorax sp. SCN45 around GFF5330

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5328 and GFF5329 overlap by 4 nucleotidesGFF5329 and GFF5330 are separated by 16 nucleotidesGFF5330 and GFF5331 are separated by 68 nucleotidesGFF5331 and GFF5332 are separated by 185 nucleotides GFF5328 - FIG00537720: hypothetical protein, at 205,933 to 206,508 GFF5328 GFF5329 - SAM-dependent methyltransferase, at 206,505 to 207,389 GFF5329 GFF5330 - no description, at 207,406 to 208,113 GFF5330 GFF5331 - Transposase and inactivated derivatives, at 208,182 to 208,877 GFF5331 GFF5332 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 209,063 to 213,820 GFF5332 Position (kb) 207 208 209Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.772 kb on + strand, within GFF5329at 206.772 kb on + strand, within GFF5329at 206.772 kb on + strand, within GFF5329at 206.773 kb on - strand, within GFF5329at 206.773 kb on - strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.829 kb on + strand, within GFF5329at 206.829 kb on + strand, within GFF5329at 206.829 kb on + strand, within GFF5329at 206.829 kb on + strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 207.201 kb on + strand, within GFF5329at 207.201 kb on + strand, within GFF5329at 207.201 kb on + strand, within GFF5329at 207.202 kb on - strand, within GFF5329at 207.202 kb on - strand, within GFF5329at 207.202 kb on - strand, within GFF5329at 207.202 kb on - strand, within GFF5329at 207.219 kb on + strand, within GFF5329at 207.219 kb on + strand, within GFF5329at 207.220 kb on - strand, within GFF5329at 207.220 kb on - strand, within GFF5329at 207.288 kb on + strand, within GFF5329at 207.288 kb on + strand, within GFF5329at 207.288 kb on + strand, within GFF5329at 207.289 kb on - strand, within GFF5329at 207.289 kb on - strand, within GFF5329at 207.582 kb on - strand, within GFF5330at 207.582 kb on - strand, within GFF5330at 207.629 kb on - strand, within GFF5330at 207.929 kb on + strand, within GFF5330at 208.138 kb on - strandat 208.138 kb on - strandat 208.150 kb on + strandat 208.150 kb on + strandat 208.150 kb on + strandat 208.150 kb on + strandat 208.151 kb on - strandat 208.151 kb on - strandat 208.151 kb on - strandat 208.151 kb on - strandat 208.155 kb on + strandat 208.155 kb on + strandat 208.155 kb on + strandat 208.155 kb on + strandat 208.156 kb on - strandat 208.156 kb on - strandat 208.156 kb on - strandat 208.156 kb on - strandat 208.156 kb on - strandat 208.156 kb on - strandat 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.431 kb on + strand, within GFF5331at 208.431 kb on + strand, within GFF5331at 208.431 kb on + strand, within GFF5331at 208.431 kb on + strand, within GFF5331at 208.432 kb on - strand, within GFF5331at 208.432 kb on - strand, within GFF5331at 208.432 kb on - strand, within GFF5331at 208.432 kb on - strand, within GFF5331at 208.432 kb on - strand, within GFF5331at 208.432 kb on - strand, within GFF5331at 208.432 kb on - strand, within GFF5331at 208.432 kb on - strand, within GFF5331at 208.432 kb on - strand, within GFF5331at 208.440 kb on + strand, within GFF5331at 208.440 kb on + strand, within GFF5331at 208.440 kb on + strand, within GFF5331at 208.441 kb on - strand, within GFF5331at 208.441 kb on - strand, within GFF5331at 208.441 kb on - strand, within GFF5331at 208.488 kb on + strand, within GFF5331at 208.488 kb on + strand, within GFF5331at 208.489 kb on - strand, within GFF5331at 208.489 kb on - strand, within GFF5331at 208.518 kb on + strand, within GFF5331at 208.519 kb on - strand, within GFF5331at 208.519 kb on - strand, within GFF5331at 208.539 kb on + strand, within GFF5331at 208.539 kb on + strand, within GFF5331at 208.539 kb on + strand, within GFF5331at 208.539 kb on + strand, within GFF5331at 208.539 kb on + strand, within GFF5331at 208.539 kb on + strand, within GFF5331at 208.539 kb on + strand, within GFF5331at 208.539 kb on + strand, within GFF5331at 208.539 kb on + strand, within GFF5331at 208.539 kb on + strand, within GFF5331at 208.540 kb on - strand, within GFF5331at 208.540 kb on - strand, within GFF5331at 208.614 kb on + strand, within GFF5331at 208.614 kb on + strand, within GFF5331at 208.615 kb on - strand, within GFF5331at 208.615 kb on - strand, within GFF5331at 208.659 kb on + strand, within GFF5331at 208.659 kb on + strand, within GFF5331at 208.659 kb on + strand, within GFF5331at 208.660 kb on - strand, within GFF5331at 208.660 kb on - strand, within GFF5331at 208.660 kb on - strand, within GFF5331at 208.702 kb on - strand, within GFF5331at 208.702 kb on - strand, within GFF5331at 208.972 kb on + strandat 208.973 kb on - strandat 208.993 kb on + strandat 208.993 kb on + strandat 208.993 kb on + strandat 209.024 kb on + strandat 209.024 kb on + strandat 209.024 kb on + strandat 209.024 kb on + strandat 209.025 kb on - strandat 209.025 kb on - strandat 209.025 kb on - strandat 209.108 kb on + strandat 209.108 kb on + strandat 209.109 kb on - strandat 209.109 kb on - strandat 209.109 kb on - strandat 209.109 kb on - strandat 209.109 kb on - strandat 209.109 kb on - strandat 209.109 kb on - strandat 209.109 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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206,679 + GFF5329 0.20 -1.1
206,679 + GFF5329 0.20 -0.1
206,679 + GFF5329 0.20 +3.1
206,679 + GFF5329 0.20 -3.1
206,679 + GFF5329 0.20 +0.2
206,679 + GFF5329 0.20 +0.5
206,679 + GFF5329 0.20 -0.2
206,679 + GFF5329 0.20 +2.0
206,679 + GFF5329 0.20 -1.5
206,679 + GFF5329 0.20 -0.7
206,679 + GFF5329 0.20 +0.0
206,679 + GFF5329 0.20 -0.0
206,679 + GFF5329 0.20 +0.5
206,679 + GFF5329 0.20 -0.0
206,680 - GFF5329 0.20 -1.6
206,680 - GFF5329 0.20 -2.5
206,680 - GFF5329 0.20 +1.5
206,680 - GFF5329 0.20 +1.3
206,680 - GFF5329 0.20 -1.2
206,680 - GFF5329 0.20 +0.6
206,680 - GFF5329 0.20 -2.1
206,680 - GFF5329 0.20 -2.4
206,680 - GFF5329 0.20 -3.7
206,680 - GFF5329 0.20 +0.6
206,680 - GFF5329 0.20 +0.8
206,680 - GFF5329 0.20 -2.4
206,772 + GFF5329 0.30 +1.1
206,772 + GFF5329 0.30 +0.1
206,772 + GFF5329 0.30 +0.6
206,773 - GFF5329 0.30 -0.3
206,773 - GFF5329 0.30 +1.6
206,790 + GFF5329 0.32 -1.2
206,790 + GFF5329 0.32 -1.8
206,790 + GFF5329 0.32 -1.4
206,790 + GFF5329 0.32 +0.1
206,790 + GFF5329 0.32 +1.0
206,790 + GFF5329 0.32 +0.8
206,790 + GFF5329 0.32 -0.2
206,790 + GFF5329 0.32 +0.6
206,790 + GFF5329 0.32 -0.2
206,790 + GFF5329 0.32 +2.1
206,790 + GFF5329 0.32 -1.5
206,790 + GFF5329 0.32 -1.6
206,790 + GFF5329 0.32 -0.5
206,790 + GFF5329 0.32 +3.4
206,790 + GFF5329 0.32 +0.2
206,790 + GFF5329 0.32 -0.9
206,790 + GFF5329 0.32 -0.8
206,790 + GFF5329 0.32 -3.2
206,790 + GFF5329 0.32 -3.6
206,790 + GFF5329 0.32 -0.9
206,791 - GFF5329 0.32 -1.7
206,791 - GFF5329 0.32 -1.2
206,791 - GFF5329 0.32 +2.6
206,791 - GFF5329 0.32 -0.5
206,791 - GFF5329 0.32 -0.4
206,791 - GFF5329 0.32 -2.5
206,791 - GFF5329 0.32 +4.1
206,791 - GFF5329 0.32 +1.2
206,791 - GFF5329 0.32 -2.2
206,791 - GFF5329 0.32 +2.1
206,791 - GFF5329 0.32 +1.9
206,791 - GFF5329 0.32 -3.5
206,791 - GFF5329 0.32 -1.6
206,791 - GFF5329 0.32 +1.1
206,791 - GFF5329 0.32 +0.0
206,791 - GFF5329 0.32 -0.1
206,791 - GFF5329 0.32 -1.9
206,791 - GFF5329 0.32 -1.6
206,791 - GFF5329 0.32 -1.6
206,791 - GFF5329 0.32 -1.9
206,791 - GFF5329 0.32 +2.2
206,791 - GFF5329 0.32 +2.7
206,791 - GFF5329 0.32 -0.5
206,791 - GFF5329 0.32 -1.6
206,829 + GFF5329 0.37 +1.1
206,829 + GFF5329 0.37 -0.0
206,829 + GFF5329 0.37 +1.4
206,829 + GFF5329 0.37 -0.5
206,830 - GFF5329 0.37 +1.1
206,830 - GFF5329 0.37 -0.8
206,830 - GFF5329 0.37 -0.1
206,830 - GFF5329 0.37 +2.3
206,830 - GFF5329 0.37 -1.0
206,830 - GFF5329 0.37 +1.3
206,830 - GFF5329 0.37 +1.5
207,201 + GFF5329 0.79 -1.6
207,201 + GFF5329 0.79 +0.5
207,201 + GFF5329 0.79 +0.7
207,202 - GFF5329 0.79 +0.5
207,202 - GFF5329 0.79 -0.3
207,202 - GFF5329 0.79 +0.2
207,202 - GFF5329 0.79 +3.5
207,219 + GFF5329 0.81 -1.5
207,219 + GFF5329 0.81 -0.8
207,220 - GFF5329 0.81 +0.4
207,220 - GFF5329 0.81 +0.6
207,288 + GFF5329 0.88 -3.6
207,288 + GFF5329 0.88 -0.9
207,288 + GFF5329 0.88 +0.8
207,289 - GFF5329 0.89 -2.2
207,289 - GFF5329 0.89 +0.9
207,582 - GFF5330 0.25 -0.3
207,582 - GFF5330 0.25 +2.3
207,629 - GFF5330 0.31 +0.7
207,929 + GFF5330 0.74 -0.1
208,138 - +1.0
208,138 - -1.2
208,150 + -1.2
208,150 + +1.4
208,150 + +1.6
208,150 + -1.0
208,151 - +2.3
208,151 - +1.4
208,151 - -4.0
208,151 - -0.5
208,155 + -0.2
208,155 + +0.7
208,155 + +0.5
208,155 + -3.4
208,156 - +0.5
208,156 - -2.8
208,156 - -0.1
208,156 - -1.4
208,156 - +1.4
208,156 - +0.1
208,341 + GFF5331 0.23 -2.9
208,341 + GFF5331 0.23 -3.7
208,341 + GFF5331 0.23 -1.2
208,341 + GFF5331 0.23 -1.1
208,341 + GFF5331 0.23 -2.5
208,341 + GFF5331 0.23 -1.5
208,341 + GFF5331 0.23 -1.9
208,341 + GFF5331 0.23 -3.1
208,341 + GFF5331 0.23 -4.6
208,341 + GFF5331 0.23 +0.8
208,341 + GFF5331 0.23 -0.5
208,341 + GFF5331 0.23 -2.3
208,341 + GFF5331 0.23 +1.1
208,341 + GFF5331 0.23 -2.5
208,341 + GFF5331 0.23 -1.2
208,341 + GFF5331 0.23 -2.8
208,341 + GFF5331 0.23 -0.9
208,341 + GFF5331 0.23 -0.5
208,341 + GFF5331 0.23 -1.4
208,341 + GFF5331 0.23 -3.6
208,341 + GFF5331 0.23 -0.6
208,341 + GFF5331 0.23 -0.5
208,341 + GFF5331 0.23 -3.1
208,341 + GFF5331 0.23 +1.2
208,341 + GFF5331 0.23 -2.6
208,341 + GFF5331 0.23 -1.5
208,341 + GFF5331 0.23 +1.6
208,341 + GFF5331 0.23 -1.5
208,341 + GFF5331 0.23 -2.6
208,341 + GFF5331 0.23 +0.5
208,342 - GFF5331 0.23 -0.4
208,342 - GFF5331 0.23 -1.3
208,342 - GFF5331 0.23 -1.4
208,342 - GFF5331 0.23 -3.4
208,342 - GFF5331 0.23 -0.1
208,342 - GFF5331 0.23 -2.1
208,342 - GFF5331 0.23 -2.8
208,342 - GFF5331 0.23 +0.1
208,342 - GFF5331 0.23 -4.5
208,342 - GFF5331 0.23 -2.1
208,342 - GFF5331 0.23 +0.1
208,342 - GFF5331 0.23 -0.2
208,342 - GFF5331 0.23 -1.2
208,342 - GFF5331 0.23 +0.1
208,342 - GFF5331 0.23 -3.2
208,342 - GFF5331 0.23 -1.2
208,342 - GFF5331 0.23 +1.6
208,342 - GFF5331 0.23 -0.7
208,342 - GFF5331 0.23 +1.5
208,342 - GFF5331 0.23 +1.4
208,342 - GFF5331 0.23 +0.1
208,342 - GFF5331 0.23 -2.1
208,342 - GFF5331 0.23 -2.3
208,342 - GFF5331 0.23 -1.6
208,342 - GFF5331 0.23 -0.2
208,342 - GFF5331 0.23 -1.6
208,342 - GFF5331 0.23 -3.2
208,342 - GFF5331 0.23 -1.7
208,431 + GFF5331 0.36 +0.0
208,431 + GFF5331 0.36 +0.6
208,431 + GFF5331 0.36 -0.9
208,431 + GFF5331 0.36 -1.4
208,432 - GFF5331 0.36 -3.8
208,432 - GFF5331 0.36 +0.1
208,432 - GFF5331 0.36 -0.9
208,432 - GFF5331 0.36 -1.2
208,432 - GFF5331 0.36 -1.2
208,432 - GFF5331 0.36 -1.4
208,432 - GFF5331 0.36 -4.1
208,432 - GFF5331 0.36 -1.9
208,432 - GFF5331 0.36 -2.8
208,440 + GFF5331 0.37 -2.2
208,440 + GFF5331 0.37 -0.3
208,440 + GFF5331 0.37 -1.7
208,441 - GFF5331 0.37 -1.8
208,441 - GFF5331 0.37 -1.1
208,441 - GFF5331 0.37 -0.5
208,488 + GFF5331 0.44 -0.9
208,488 + GFF5331 0.44 -0.7
208,489 - GFF5331 0.44 +0.5
208,489 - GFF5331 0.44 -0.8
208,518 + GFF5331 0.48 -1.6
208,519 - GFF5331 0.48 -0.5
208,519 - GFF5331 0.48 +1.2
208,539 + GFF5331 0.51 +0.5
208,539 + GFF5331 0.51 -2.4
208,539 + GFF5331 0.51 -1.1
208,539 + GFF5331 0.51 -2.8
208,539 + GFF5331 0.51 -1.7
208,539 + GFF5331 0.51 -1.2
208,539 + GFF5331 0.51 +0.5
208,539 + GFF5331 0.51 -1.4
208,539 + GFF5331 0.51 -1.5
208,539 + GFF5331 0.51 -3.9
208,540 - GFF5331 0.51 -0.5
208,540 - GFF5331 0.51 -3.2
208,614 + GFF5331 0.62 -2.6
208,614 + GFF5331 0.62 -2.7
208,615 - GFF5331 0.62 -1.2
208,615 - GFF5331 0.62 -1.9
208,659 + GFF5331 0.69 +0.1
208,659 + GFF5331 0.69 -1.3
208,659 + GFF5331 0.69 +0.1
208,660 - GFF5331 0.69 -3.0
208,660 - GFF5331 0.69 -0.3
208,660 - GFF5331 0.69 -0.2
208,702 - GFF5331 0.75 -0.6
208,702 - GFF5331 0.75 -2.1
208,972 + +0.5
208,973 - +0.5
208,993 + -1.4
208,993 + -0.7
208,993 + -2.1
209,024 + -0.7
209,024 + +0.3
209,024 + +0.6
209,024 + -2.4
209,025 - +1.2
209,025 - +0.9
209,025 - +1.1
209,108 + -3.8
209,108 + -2.0
209,109 - +0.5
209,109 - -1.4
209,109 - -0.7
209,109 - -1.1
209,109 - -0.9
209,109 - -2.3
209,109 - -0.2
209,109 - -2.5

Or see this region's nucleotide sequence