Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5323 and GFF5324 are separated by 86 nucleotides GFF5324 and GFF5325 are separated by 34 nucleotides
GFF5323 - Type IV pilus biogenesis protein PilQ, at 199,660 to 201,840
GFF5323
GFF5324 - Shikimate kinase I (EC 2.7.1.71), at 201,927 to 202,412
GFF5324
GFF5325 - 3-dehydroquinate synthase (EC 4.2.3.4), at 202,447 to 203,556
GFF5325
Position (kb) 201
202
203 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 200.945 kb on + strand, within GFF5323 at 200.946 kb on - strand, within GFF5323 at 201.117 kb on + strand, within GFF5323 at 201.118 kb on - strand, within GFF5323 at 201.132 kb on + strand, within GFF5323 at 201.132 kb on + strand, within GFF5323 at 201.279 kb on + strand, within GFF5323 at 201.316 kb on + strand, within GFF5323 at 201.384 kb on - strand, within GFF5323 at 201.546 kb on + strand, within GFF5323 at 201.546 kb on + strand, within GFF5323 at 201.546 kb on + strand, within GFF5323 at 201.546 kb on + strand, within GFF5323 at 201.546 kb on + strand, within GFF5323 at 201.546 kb on + strand, within GFF5323 at 201.546 kb on + strand, within GFF5323 at 201.546 kb on + strand, within GFF5323 at 201.546 kb on + strand, within GFF5323 at 201.547 kb on - strand, within GFF5323 at 201.547 kb on - strand, within GFF5323 at 201.547 kb on - strand, within GFF5323 at 201.547 kb on - strand, within GFF5323 at 201.547 kb on - strand, within GFF5323 at 201.547 kb on - strand, within GFF5323 at 201.547 kb on - strand, within GFF5323 at 201.547 kb on - strand, within GFF5323 at 201.547 kb on - strand, within GFF5323 at 201.675 kb on + strand at 201.675 kb on + strand at 201.675 kb on + strand at 201.675 kb on + strand at 201.676 kb on - strand at 201.676 kb on - strand at 201.676 kb on - strand at 201.737 kb on - strand at 201.737 kb on - strand at 201.784 kb on + strand at 201.798 kb on + strand at 201.798 kb on + strand at 201.799 kb on - strand at 201.817 kb on - strand at 201.852 kb on - strand at 201.999 kb on + strand, within GFF5324 at 201.999 kb on + strand, within GFF5324 at 202.155 kb on + strand, within GFF5324 at 202.155 kb on + strand, within GFF5324 at 202.278 kb on + strand, within GFF5324 at 202.460 kb on + strand at 202.460 kb on + strand at 202.461 kb on - strand at 202.461 kb on - strand at 202.461 kb on - strand at 202.618 kb on + strand, within GFF5325 at 202.826 kb on - strand, within GFF5325 at 202.826 kb on - strand, within GFF5325 at 202.946 kb on - strand, within GFF5325 at 203.047 kb on + strand, within GFF5325 at 203.047 kb on + strand, within GFF5325 at 203.047 kb on + strand, within GFF5325 at 203.248 kb on + strand, within GFF5325
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 200,945 + GFF5323 0.59 -1.8 200,946 - GFF5323 0.59 -0.6 201,117 + GFF5323 0.67 -2.7 201,118 - GFF5323 0.67 -3.0 201,132 + GFF5323 0.67 -2.9 201,132 + GFF5323 0.67 +0.3 201,279 + GFF5323 0.74 -0.7 201,316 + GFF5323 0.76 -3.2 201,384 - GFF5323 0.79 -2.7 201,546 + GFF5323 0.86 -0.2 201,546 + GFF5323 0.86 -0.8 201,546 + GFF5323 0.86 -0.2 201,546 + GFF5323 0.86 -1.7 201,546 + GFF5323 0.86 -0.6 201,546 + GFF5323 0.86 +0.9 201,546 + GFF5323 0.86 -0.9 201,546 + GFF5323 0.86 -0.9 201,546 + GFF5323 0.86 -1.2 201,547 - GFF5323 0.87 -1.7 201,547 - GFF5323 0.87 -1.4 201,547 - GFF5323 0.87 -0.2 201,547 - GFF5323 0.87 -1.2 201,547 - GFF5323 0.87 -1.1 201,547 - GFF5323 0.87 +1.7 201,547 - GFF5323 0.87 -2.4 201,547 - GFF5323 0.87 -0.7 201,547 - GFF5323 0.87 -0.8 201,675 + -2.8 201,675 + -2.3 201,675 + -0.7 201,675 + -2.4 201,676 - -1.0 201,676 - -0.5 201,676 - -1.5 201,737 - -2.9 201,737 - -3.2 201,784 + -0.2 201,798 + -3.3 201,798 + -2.1 201,799 - -2.9 201,817 - +0.9 201,852 - +0.1 201,999 + GFF5324 0.15 -1.5 201,999 + GFF5324 0.15 +2.1 202,155 + GFF5324 0.47 -2.0 202,155 + GFF5324 0.47 -0.7 202,278 + GFF5324 0.72 +2.1 202,460 + +0.2 202,460 + -0.7 202,461 - +2.7 202,461 - -3.9 202,461 - +1.3 202,618 + GFF5325 0.15 +2.1 202,826 - GFF5325 0.34 +2.1 202,826 - GFF5325 0.34 +2.1 202,946 - GFF5325 0.45 +0.5 203,047 + GFF5325 0.54 -0.2 203,047 + GFF5325 0.54 +0.5 203,047 + GFF5325 0.54 -0.7 203,248 + GFF5325 0.72 +1.1
Or see this region's nucleotide sequence