Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5302 and GFF5303 are separated by 174 nucleotides GFF5303 and GFF5304 are separated by 1 nucleotides GFF5304 and GFF5305 are separated by 21 nucleotides
GFF5302 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 177,712 to 178,752
GFF5302
GFF5303 - Tricarboxylate transport transcriptional regulator TctD, at 178,927 to 179,601
GFF5303
GFF5304 - no description, at 179,603 to 181,039
GFF5304
GFF5305 - S-adenosylmethionine synthetase (EC 2.5.1.6), at 181,061 to 182,248
GFF5305
Position (kb) 179
180
181
182 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 178.613 kb on + strand, within GFF5302 at 178.614 kb on - strand, within GFF5302 at 178.770 kb on + strand at 178.770 kb on + strand at 178.770 kb on + strand at 178.770 kb on + strand at 178.771 kb on - strand at 178.771 kb on - strand at 178.817 kb on + strand at 178.818 kb on - strand at 178.871 kb on + strand at 178.897 kb on + strand at 178.897 kb on + strand at 178.897 kb on + strand at 178.898 kb on - strand at 179.059 kb on + strand, within GFF5303 at 179.059 kb on + strand, within GFF5303 at 179.060 kb on - strand, within GFF5303 at 179.219 kb on - strand, within GFF5303 at 179.219 kb on - strand, within GFF5303 at 179.219 kb on - strand, within GFF5303 at 179.326 kb on + strand, within GFF5303 at 179.326 kb on + strand, within GFF5303 at 179.327 kb on - strand, within GFF5303 at 179.459 kb on + strand, within GFF5303 at 179.459 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.504 kb on - strand, within GFF5303 at 179.504 kb on - strand, within GFF5303 at 179.504 kb on - strand, within GFF5303 at 179.504 kb on - strand, within GFF5303 at 179.504 kb on - strand, within GFF5303 at 179.504 kb on - strand, within GFF5303 at 179.504 kb on - strand, within GFF5303 at 179.504 kb on - strand, within GFF5303 at 179.504 kb on - strand, within GFF5303 at 179.504 kb on - strand, within GFF5303 at 179.504 kb on - strand, within GFF5303 at 179.573 kb on - strand at 179.599 kb on + strand at 179.599 kb on + strand at 179.600 kb on - strand at 179.721 kb on - strand at 179.721 kb on - strand at 179.958 kb on - strand, within GFF5304 at 179.958 kb on - strand, within GFF5304 at 179.958 kb on - strand, within GFF5304 at 180.014 kb on + strand, within GFF5304 at 180.014 kb on + strand, within GFF5304 at 180.113 kb on + strand, within GFF5304 at 180.113 kb on + strand, within GFF5304 at 180.113 kb on + strand, within GFF5304 at 180.113 kb on + strand, within GFF5304 at 180.114 kb on - strand, within GFF5304 at 180.114 kb on - strand, within GFF5304 at 180.410 kb on + strand, within GFF5304 at 180.746 kb on + strand, within GFF5304 at 180.747 kb on - strand, within GFF5304 at 180.747 kb on - strand, within GFF5304 at 180.747 kb on - strand, within GFF5304 at 180.872 kb on + strand, within GFF5304 at 180.873 kb on - strand, within GFF5304
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 178,613 + GFF5302 0.87 +0.4 178,614 - GFF5302 0.87 +0.2 178,770 + -3.6 178,770 + +1.1 178,770 + -0.4 178,770 + -1.6 178,771 - +0.1 178,771 - -2.4 178,817 + -1.6 178,818 - +1.8 178,871 + -0.7 178,897 + +1.9 178,897 + +0.8 178,897 + -1.4 178,898 - -3.2 179,059 + GFF5303 0.20 -0.5 179,059 + GFF5303 0.20 -0.1 179,060 - GFF5303 0.20 +0.0 179,219 - GFF5303 0.43 -1.2 179,219 - GFF5303 0.43 -1.7 179,219 - GFF5303 0.43 -2.1 179,326 + GFF5303 0.59 -1.7 179,326 + GFF5303 0.59 +1.1 179,327 - GFF5303 0.59 +0.1 179,459 + GFF5303 0.79 -2.3 179,459 + GFF5303 0.79 +0.9 179,503 + GFF5303 0.85 +4.0 179,503 + GFF5303 0.85 -0.5 179,503 + GFF5303 0.85 +1.1 179,503 + GFF5303 0.85 +0.1 179,503 + GFF5303 0.85 -2.4 179,503 + GFF5303 0.85 -1.5 179,503 + GFF5303 0.85 -1.1 179,503 + GFF5303 0.85 +0.5 179,503 + GFF5303 0.85 -2.8 179,503 + GFF5303 0.85 +0.4 179,503 + GFF5303 0.85 -0.5 179,503 + GFF5303 0.85 -0.4 179,503 + GFF5303 0.85 +0.1 179,503 + GFF5303 0.85 -1.4 179,503 + GFF5303 0.85 -0.3 179,504 - GFF5303 0.85 -0.5 179,504 - GFF5303 0.85 -2.2 179,504 - GFF5303 0.85 -1.1 179,504 - GFF5303 0.85 -2.2 179,504 - GFF5303 0.85 -2.9 179,504 - GFF5303 0.85 +1.6 179,504 - GFF5303 0.85 +0.5 179,504 - GFF5303 0.85 -1.4 179,504 - GFF5303 0.85 -0.2 179,504 - GFF5303 0.85 +1.1 179,504 - GFF5303 0.85 +0.2 179,573 - +1.0 179,599 + -2.0 179,599 + +0.7 179,600 - +2.8 179,721 - -0.0 179,721 - +0.2 179,958 - GFF5304 0.25 -1.4 179,958 - GFF5304 0.25 +1.5 179,958 - GFF5304 0.25 -0.3 180,014 + GFF5304 0.29 +0.8 180,014 + GFF5304 0.29 +1.7 180,113 + GFF5304 0.35 +0.0 180,113 + GFF5304 0.35 -3.8 180,113 + GFF5304 0.35 -0.5 180,113 + GFF5304 0.35 +1.4 180,114 - GFF5304 0.36 +0.1 180,114 - GFF5304 0.36 +0.5 180,410 + GFF5304 0.56 -0.8 180,746 + GFF5304 0.80 +2.0 180,747 - GFF5304 0.80 +0.2 180,747 - GFF5304 0.80 -2.7 180,747 - GFF5304 0.80 +3.7 180,872 + GFF5304 0.88 -1.9 180,873 - GFF5304 0.88 -0.9
Or see this region's nucleotide sequence