Strain Fitness in Variovorax sp. SCN45 around GFF5292

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5291 and GFF5292 are separated by 6 nucleotidesGFF5292 and GFF5293 are separated by 23 nucleotides GFF5291 - Ferrichrome-iron receptor, at 162,118 to 164,268 GFF5291 GFF5292 - no description, at 164,275 to 164,778 GFF5292 GFF5293 - N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87), at 164,802 to 166,052 GFF5293 Position (kb) 164 165Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 163.393 kb on + strand, within GFF5291at 163.393 kb on + strand, within GFF5291at 163.393 kb on + strand, within GFF5291at 163.393 kb on + strand, within GFF5291at 163.394 kb on - strand, within GFF5291at 163.394 kb on - strand, within GFF5291at 163.394 kb on - strand, within GFF5291at 163.394 kb on - strand, within GFF5291at 163.394 kb on - strand, within GFF5291at 163.450 kb on + strand, within GFF5291at 163.451 kb on - strand, within GFF5291at 163.451 kb on - strand, within GFF5291at 163.543 kb on + strand, within GFF5291at 163.543 kb on + strand, within GFF5291at 163.543 kb on + strand, within GFF5291at 163.544 kb on - strand, within GFF5291at 163.544 kb on - strand, within GFF5291at 163.544 kb on - strand, within GFF5291at 163.544 kb on - strand, within GFF5291at 163.544 kb on - strand, within GFF5291at 163.570 kb on + strand, within GFF5291at 163.570 kb on + strand, within GFF5291at 163.570 kb on + strand, within GFF5291at 163.580 kb on - strand, within GFF5291at 163.580 kb on - strand, within GFF5291at 163.580 kb on - strand, within GFF5291at 163.580 kb on - strand, within GFF5291at 163.580 kb on - strand, within GFF5291at 163.580 kb on - strand, within GFF5291at 163.591 kb on + strand, within GFF5291at 163.669 kb on + strand, within GFF5291at 163.669 kb on + strand, within GFF5291at 163.669 kb on + strand, within GFF5291at 163.726 kb on + strand, within GFF5291at 163.727 kb on - strand, within GFF5291at 163.873 kb on + strand, within GFF5291at 163.873 kb on + strand, within GFF5291at 163.873 kb on + strand, within GFF5291at 163.879 kb on + strand, within GFF5291at 163.879 kb on + strand, within GFF5291at 163.879 kb on + strand, within GFF5291at 163.879 kb on + strand, within GFF5291at 163.880 kb on - strand, within GFF5291at 163.880 kb on - strand, within GFF5291at 163.880 kb on - strand, within GFF5291at 163.979 kb on - strand, within GFF5291at 163.979 kb on - strand, within GFF5291at 164.035 kb on + strand, within GFF5291at 164.035 kb on + strand, within GFF5291at 164.035 kb on + strand, within GFF5291at 164.035 kb on + strand, within GFF5291at 164.035 kb on + strand, within GFF5291at 164.036 kb on - strand, within GFF5291at 164.036 kb on - strand, within GFF5291at 164.098 kb on + strandat 164.185 kb on + strandat 164.311 kb on + strandat 164.311 kb on + strandat 164.312 kb on - strandat 164.312 kb on - strandat 164.458 kb on + strand, within GFF5292at 164.459 kb on - strand, within GFF5292at 164.518 kb on + strand, within GFF5292at 164.518 kb on + strand, within GFF5292at 164.518 kb on + strand, within GFF5292at 164.518 kb on + strand, within GFF5292at 164.519 kb on - strand, within GFF5292at 164.519 kb on - strand, within GFF5292at 164.584 kb on + strand, within GFF5292at 164.584 kb on + strand, within GFF5292at 164.584 kb on + strand, within GFF5292at 164.972 kb on + strand, within GFF5293at 164.972 kb on + strand, within GFF5293at 165.594 kb on + strand, within GFF5293at 165.594 kb on + strand, within GFF5293at 165.594 kb on + strand, within GFF5293at 165.594 kb on + strand, within GFF5293at 165.595 kb on - strand, within GFF5293at 165.595 kb on - strand, within GFF5293

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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163,393 + GFF5291 0.59 +2.4
163,393 + GFF5291 0.59 -0.1
163,393 + GFF5291 0.59 -0.7
163,393 + GFF5291 0.59 +0.4
163,394 - GFF5291 0.59 -2.6
163,394 - GFF5291 0.59 +0.5
163,394 - GFF5291 0.59 +3.1
163,394 - GFF5291 0.59 +0.8
163,394 - GFF5291 0.59 -0.0
163,450 + GFF5291 0.62 -0.4
163,451 - GFF5291 0.62 -2.2
163,451 - GFF5291 0.62 -0.9
163,543 + GFF5291 0.66 +0.5
163,543 + GFF5291 0.66 +1.1
163,543 + GFF5291 0.66 +3.4
163,544 - GFF5291 0.66 +0.2
163,544 - GFF5291 0.66 +1.0
163,544 - GFF5291 0.66 -0.1
163,544 - GFF5291 0.66 +1.5
163,544 - GFF5291 0.66 -3.2
163,570 + GFF5291 0.68 +0.6
163,570 + GFF5291 0.68 -2.1
163,570 + GFF5291 0.68 -1.7
163,580 - GFF5291 0.68 +2.0
163,580 - GFF5291 0.68 -0.7
163,580 - GFF5291 0.68 -0.6
163,580 - GFF5291 0.68 +1.3
163,580 - GFF5291 0.68 +1.5
163,580 - GFF5291 0.68 -1.7
163,591 + GFF5291 0.68 +3.5
163,669 + GFF5291 0.72 +3.4
163,669 + GFF5291 0.72 +0.3
163,669 + GFF5291 0.72 +0.3
163,726 + GFF5291 0.75 +0.3
163,727 - GFF5291 0.75 -2.3
163,873 + GFF5291 0.82 -0.9
163,873 + GFF5291 0.82 -0.5
163,873 + GFF5291 0.82 -0.8
163,879 + GFF5291 0.82 -1.5
163,879 + GFF5291 0.82 +0.3
163,879 + GFF5291 0.82 +2.3
163,879 + GFF5291 0.82 -1.6
163,880 - GFF5291 0.82 -0.7
163,880 - GFF5291 0.82 +1.2
163,880 - GFF5291 0.82 -0.4
163,979 - GFF5291 0.87 +0.2
163,979 - GFF5291 0.87 +0.2
164,035 + GFF5291 0.89 -1.4
164,035 + GFF5291 0.89 -2.2
164,035 + GFF5291 0.89 +1.1
164,035 + GFF5291 0.89 -0.9
164,035 + GFF5291 0.89 +2.1
164,036 - GFF5291 0.89 +4.6
164,036 - GFF5291 0.89 -2.1
164,098 + -0.8
164,185 + +2.3
164,311 + -1.9
164,311 + +1.5
164,312 - -1.1
164,312 - -0.9
164,458 + GFF5292 0.36 +1.0
164,459 - GFF5292 0.37 -3.0
164,518 + GFF5292 0.48 -1.0
164,518 + GFF5292 0.48 +1.5
164,518 + GFF5292 0.48 -1.5
164,518 + GFF5292 0.48 +0.2
164,519 - GFF5292 0.48 -1.6
164,519 - GFF5292 0.48 +1.4
164,584 + GFF5292 0.61 +3.5
164,584 + GFF5292 0.61 -0.5
164,584 + GFF5292 0.61 -1.1
164,972 + GFF5293 0.14 -3.3
164,972 + GFF5293 0.14 -0.7
165,594 + GFF5293 0.63 -3.1
165,594 + GFF5293 0.63 -1.6
165,594 + GFF5293 0.63 +0.4
165,594 + GFF5293 0.63 -1.4
165,595 - GFF5293 0.63 -0.5
165,595 - GFF5293 0.63 +0.1

Or see this region's nucleotide sequence