Strain Fitness in Variovorax sp. SCN45 around GFF5272

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
139,281	+		GFF5271	0.23	+1.3
139,281	+		GFF5271	0.23	+2.1
139,282	-		GFF5271	0.23	+0.7
139,282	-		GFF5271	0.23	-1.5
139,440	+		GFF5271	0.40	-1.1
139,440	+		GFF5271	0.40	+0.5
139,440	+		GFF5271	0.40	+1.1
139,440	+		GFF5271	0.40	-1.0
139,441	-		GFF5271	0.40	+1.7
139,441	-		GFF5271	0.40	+1.2
139,573	-		GFF5271	0.55	-0.1
139,573	-		GFF5271	0.55	+0.5
139,854	+		GFF5271	0.85	-2.1
139,854	+		GFF5271	0.85	+2.2
139,855	-		GFF5271	0.85	-0.4
140,004	-				-1.8
140,024	+				-1.7
140,024	+				+0.5
140,024	+				-0.9
140,025	-				+1.4
140,032	+				+1.4
140,033	-				+0.3
140,033	-				-0.6
140,036	+				-1.2
140,036	+				-1.1
140,045	+				+0.9
140,046	-				-0.2
140,163	+				-2.8
140,163	+				+1.0
140,163	+				+0.7
140,163	+				+0.9
140,163	+				+0.5
140,163	+				-1.5
140,164	-				+0.8
140,164	-				-0.1
140,435	+		GFF5272	0.20	-2.0
140,435	+		GFF5272	0.20	-1.1
140,435	+		GFF5272	0.20	-3.9
140,436	-		GFF5272	0.20	-1.4
140,495	+		GFF5272	0.24	+0.1
140,496	-		GFF5272	0.25	-2.8
140,540	+		GFF5272	0.28	+1.8
140,541	-		GFF5272	0.28	-1.0
140,555	+		GFF5272	0.29	-1.6
140,555	+		GFF5272	0.29	+3.3
140,556	-		GFF5272	0.29	-3.0
140,556	-		GFF5272	0.29	+1.2
140,570	+		GFF5272	0.30	-1.7
140,570	+		GFF5272	0.30	-2.1
140,594	+		GFF5272	0.32	-0.7
140,702	+		GFF5272	0.40	-2.1
140,702	+		GFF5272	0.40	-2.6
140,703	-		GFF5272	0.40	-1.7
140,847	-		GFF5272	0.51	+0.8
140,849	+		GFF5272	0.51	+0.0
140,850	-		GFF5272	0.52	-2.1
140,850	-		GFF5272	0.52	-2.1
141,149	+		GFF5272	0.74	-0.5
141,149	+		GFF5272	0.74	-1.1
141,149	+		GFF5272	0.74	-0.3
141,149	+		GFF5272	0.74	-0.2
141,149	+		GFF5272	0.74	+1.2
141,149	+		GFF5272	0.74	-2.3
141,149	+		GFF5272	0.74	-4.3
141,149	+		GFF5272	0.74	-1.1
141,150	-		GFF5272	0.74	-1.7
141,150	-		GFF5272	0.74	-0.9
141,150	-		GFF5272	0.74	+0.5
141,150	-		GFF5272	0.74	-3.2
141,150	-		GFF5272	0.74	-2.5
141,215	+		GFF5272	0.79	-1.1
141,215	+		GFF5272	0.79	-2.3
141,215	+		GFF5272	0.79	-1.6
141,215	+		GFF5272	0.79	+1.2
141,216	-		GFF5272	0.79	+0.1
141,216	-		GFF5272	0.79	-0.7
141,216	-		GFF5272	0.79	-0.2
141,317	+		GFF5272	0.87	+1.1
141,317	+		GFF5272	0.87	-2.1
141,318	-		GFF5272	0.87	+0.1
141,473	+				-2.1
141,476	+				-2.0
141,476	+				-2.8
141,477	-				-1.1
141,477	-				+0.7
141,477	-				+2.1
141,482	+				+2.1
141,482	+				+0.1
141,482	+				-0.2
141,483	-				+0.9
141,483	-				+0.1
141,483	-				-0.9
141,483	-				+1.1
141,711	+		GFF5273	0.10	-0.1
141,712	-		GFF5273	0.10	-1.4
141,729	+		GFF5273	0.12	+0.1
141,729	+		GFF5273	0.12	-2.5
141,729	+		GFF5273	0.12	-2.2
141,730	-		GFF5273	0.12	-2.3
141,730	-		GFF5273	0.12	-1.7
141,730	-		GFF5273	0.12	-0.4
141,730	-		GFF5273	0.12	+1.3
141,730	-		GFF5273	0.12	-0.7
141,783	+		GFF5273	0.19	+1.1
141,783	+		GFF5273	0.19	-1.2
141,784	-		GFF5273	0.19	+1.0
142,005	+		GFF5273	0.44	-0.7
142,005	+		GFF5273	0.44	+0.7
142,006	-		GFF5273	0.45	+0.7
142,006	-		GFF5273	0.45	-1.2
142,215	+		GFF5273	0.69	-1.5
142,215	+		GFF5273	0.69	+0.0
142,350	+		GFF5273	0.85	+1.9
142,350	+		GFF5273	0.85	-1.4
142,350	+		GFF5273	0.85	-1.8
142,350	+		GFF5273	0.85	+0.7
142,350	+		GFF5273	0.85	+0.8
142,350	+		GFF5273	0.85	-2.8
142,350	+		GFF5273	0.85	-0.2
142,350	+		GFF5273	0.85	+3.4
142,350	+		GFF5273	0.85	-1.1
142,351	-		GFF5273	0.85	-1.1
142,351	-		GFF5273	0.85	+1.7
142,351	-		GFF5273	0.85	-1.3
142,351	-		GFF5273	0.85	-1.3
142,351	-		GFF5273	0.85	-0.2
142,351	-		GFF5273	0.85	+1.7
142,351	-		GFF5273	0.85	-0.2
142,351	-		GFF5273	0.85	+2.4
142,351	-		GFF5273	0.85	-1.5
142,351	-		GFF5273	0.85	+0.6